GtRNAdb

tRNAscan-SE Analysis of Helicobacter acinonychis Sheeba

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGTGTTAGCTCAGTTGGGAGAGTGCAACGCTGGCAGCGTTGAG...........GtCAGGGGTTCGAACCCCCTACACTCCACCA chr.trna17-AlaGGC Sc: 79.09 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGAATTAGCTCAGTTGGGAGAGCGCCTGTTTTGCACGCAGGAG...........GtCAGCGGTTCGATTCCGCTATTCTCCACCA chr.trna8-AlaTGC Sc: 89.75

Arg tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGCTCGTAGCTCAGCTGAAtAGAGCAACAGGTTGCGGTCCTGTAG...........GtCGGGGGTTTGAATCCCTCCGAGCACACCA chr.trna33-ArgGCG Sc: 69.51 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGTTCGTAGCTCAATTGGAtAGAGCACCAGACTTCGGATCTGGGG...........GtTAGGGGTTCGACTCCCTTCGGGCGCACCA chr.trna11-ArgTCG Sc: 83.10 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTCCTTGTAGCTCAGCTGGAtAGAGCGTACGATTCCTAATCGTAAG...........GtCGTGGGTTCGAATCCCGCCAAGGACACCA chr.trna16-ArgCCT Sc: 88.43 >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<................>>>>>.......<<<<<<<<<<<<.... GCGCTTGTAGCTCAGCTGGAtAGAGCAACAGCCTTCTAAGCCGTAG...........GtCGCAGGTTCGAGTCCTGCCAAGCGCACCA chr.trna12-ArgTCT Sc: 92.26

Asn tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCAGATTAGCTCAGCGGTA.GAGTAGGCGGCTGTTAACCGCTTG...........GtCGTAGGTTCGAATCCTACATCTGGAGCCA chr.trna35-AsnGTT Sc: 79.87

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGCGGTAGTTCAGCTGGTtAGAATATCTGCCTGTCACGCAGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chr.trna4-AspGTC Sc: 91.95

Cys tRNAs

>>>>>>>..>>>..........<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGCGACATAGCCAAGTGGTA.AGGCATGGGTCTGCAAAACCTTGA...........TtCCCCAGTTCGAATCTGGGTGTCGCCTCCA chr.trna29-CysGCA Sc: 72.62

Gln tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGTGTCGCCAAGCGGTA.AGGCACCAGGTTTTGGTCCTGGCA...........TtCCGAGGTTCGAATCCTTGCACCCCAGCCA chr.trna31-GlnTTG Sc: 72.57

Glu tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCTCCTTCATCTAGTGGTt.A.GGATACCACCCTTTCACGGTGGTT...........ACAGGGGTTCAAATCCCCTAGGAGTCACCA chr.trna2-GluTTC Sc: 63.09 GACCCTTTCATCTAGTGGCcaA.GGATACCACCCTTTCACGGTGGAA...........ACGGAAGTTCAAATCTTTCAAGGGTCGCCA chr.trna5-GluTTC Sc: 52.89

Gly tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAGCTCAGT.GGT.A.GAGCACGACCTTGCCAAGGTCGGG...........GcCGCGGGTTCGATCCCCGTTTCCCGCTCCA chr.trna27-GlyGCC Sc: 85.93 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAGCTCAGTTGGCtA.GAGCATCAGCCTTCCAAGCTGAGG...........GtCGCGGGTTCGAGCCCCGTTTCCCGCTCCA chr.trna23-GlyTCC Sc: 97.38

His tRNAs

>>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGGAGTAGCTCAGTCGGTtAGAGCATCAGATTGTGGTCCTGAGG...........GtCGTGGGTTCGATTCCCATCTTCCACCCCA chr.trna10-HisGTG Sc: 77.54

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTTATAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGAGGTTCAACTCCTCCTAAGCCCACCA chr.trna7-IleGAT Sc: 90.80

Leu tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCATTGGTGGTGGAATTGGTaGACACGCCATCTTGAGGGGGTGGTGGGAGCAA...TCTCGTGCGAGTTCGAGTCTCGC.CCAGTGCACCA chr.trna19-LeuGAG Sc: 53.63 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGAAGTGGCGAAATTGGTaGACGCACTAGACTTAGGATCTAGCGCC.GCAA....GGCATGAAGGTTCGATTCCTTT.CTTCCGCACCA chr.trna34-LeuTAG Sc: 79.22 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGAAGTGGTGGAATTGGTaGACACGCTAGACTCAAAATCTGGTGGGAGCAA...TCTCGTGTCGGTTCGAGTCCGAC.CTTCGGCACCA chr.trna20-LeuCAA Sc: 72.32 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCAGGTGGTGGAATTGGTaGACACAAGGGACTTAAAATCCCTCGGTAGCAA...TACCGTGCCGGTTCAAGTCCGGC.TTTGGGCACCA chr.trna28-LeuTAA Sc: 69.17

Lys tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GATCCGTTAGCTCAGCTGGTAGAGCAATTCCCTTTTAAGGAATGG...........GtCGTTGGTTCAAATCCAACACGGATCACCA chr.trna1-LysTTT Sc: 90.56

Met tRNAs

>>>>>>>..>>>>...........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGATTCTTAGCTCAGCT.GGTc.AGAGCACTCGGCTCATAACCGATTG...........GtCGTAGGTTCAAGTCCTACAGAATCCACCA chr.trna13-MetCAT Sc: 85.74 .>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGAGTAGAGCAGTCcGGT..AGCTCGTTGGGCTCATAACCCAAAG...........GtCAGTGGTTCAAATCCATTCTCCGCAACCA chr.trna32-MetCAT Sc: 84.27 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTCAAGGTAGCTCAGCT.GGTttAGAGCGCTGGTCTCATAAGCCGGAG...........GtCGGGGGTTCAAGTCCCCCTCTTGACACCA chr.trna6-MetCAT Sc: 82.06

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCTTGATAGCTCAGTCGGTAGAGCAGAAGACTGAAAATCTTCGT...........GtCGGTGGTTCGATTCCGCCTCAAGCCACCA chr.trna36-PheGAA Sc: 84.96

Pro tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAGTATGGCGCAGCCtGATtAGCGCGCACCCTTGGGGTGGGTGAG...........GtCGTGGGTTTGAATCCCGCTACTCCGACCA chr.trna14-ProGGG Sc: 66.35 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGTCtGGTtAGCGCACTTGGTTTGGGACCAAGGG...........GtCGAAGGTTCGAATCCTTTCGCCCCGACCA chr.trna9-ProTGG Sc: 92.94

SeC tRNAs

Ser tRNAs

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>........<<<<...>>>>>.......<<<<<<<<<<<<.... GGGGAGATGTCCGAGT.GGTtgA.AGGAGCACGCCTGGAACGCGTGTAAGGT.GCAA...GCCTT.CGAGGGTTCGAATCCCTCTCTCTCCGCCA chr.trna15-SerGGA Sc: 70.08 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>..........<<<...>>>>>.......<<<<<<<<<<<<.... CGGGAGATGGCTGAGT.GGTtgA.AAGCGGCGGTCTTGAAAACCGTTGAGGG.TCAT...GCCTC.CGGGGGTTCGAATCCCTCTCTCCCGGCCA chr.trna30-SerTGA Sc: 71.62 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>.>........<.<....>>>>>.......<<<<<<<<<<<<.... GGACAGGTGGGTGAGTTGGCtgA.AACCACATCCCTGCTAAGGATGCGTAGCCGTCA..AGGTTAcCGAGGGTTCGAATCCCTCCCTGTCCGCCA chr.trna26-SerGCT Sc: 69.60

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTGTATAGCTCAGG.GGTA.GAGCACTTCCTTGGTAAGGAAGAG...........GtCGGCGGTTCAATTCCGCTTATAGGCTCCA chr.trna24-ThrGGT Sc: 83.62 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTGGCTTAGCTCAGTTGGTA.GAGCAGCTGCCTTGTAAGCAGCAG...........GtCGGGGGTTCAAGTCCCTTAGCCAGCTCCA chr.trna21-ThrTGT Sc: 96.71

Trp tRNAs

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... AGGTCAGTAGCTCCAATGGTAGAGCACCGGTCTCCAAAACCGATT...........GtTGGGGGTTCGAGTCCCTCCTGACCTGCCA chr.trna25-TrpCCA Sc: 72.12

Tyr tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>.......<<.....>>>>>.......<<<<<<<<<<<<.... GGTGAGATACTCAAGTGGCcaA.CGAGGGCAGACTGTAAATCTGCTGACTA.......TGTCTtCCGTGGTTCGAATCCACGTCTCACCACCA chr.trna22-TyrGTA Sc: 59.67

Val tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCGCGTAGCTCAGTTGGTAGAGCACTACCTTGACATGGTAGTG...........GtCGCTGGTTCAAGTCCAGTCGTGGCCACCA chr.trna18-ValGAC Sc: 86.92 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCGCTTAGCTCAGTTGGTAGAGCGCTACCCTTACAAGGTAGAT...........GtCATAAGTTCGAGTCTTATAGCGACCACCA chr.trna3-ValTAC Sc: 92.56

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.