GtRNAdb

tRNAscan-SE Analysis of Helicobacter acinonychis Sheeba

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 214561 214636 Lys TTT ctttttgtga tttgagcatc0 0 90.56 59.4331.13 Both
chr 2 214649 214723 Glu TTC tgagcatcgt ctcttttaga0 0 63.09 32.9030.19 Both
chr 3 214760 214835 Val TAC tcaatatttt tatgaacttc0 0 92.56 63.6528.91 Both
chr 4 214879 214955 Asp GTC gtttggatag ccaaatgctt0 0 91.95 76.8115.14 Both
chr 5 215015 215090 Glu TTC ttataaaaat caaagatttc0 0 52.89 18.2934.60 Both
chr 6 342648 342725 Met CAT atttgcttgt tgattttgat0 0 82.06 68.1713.89 Both
chr 7 362398 362474 Ile GAT attagtttaa ttctttcaca0 0 90.80 65.8624.94 Both
chr 8 362491 362566 Ala TGC cacaatcttt tgtttttctt0 0 89.75 75.0514.70 Both
chr 9 417108 417185 Pro TGG tgaaaaatct ctttttgcat0 0 92.94 69.9423.00 Both
chr 10 417248 417324 His GTG tctttcaatg tctcataaaa0 0 77.54 61.9915.55 Both
chr 11 417389 417465 Arg TCG taaattgtaa cctaacgcca0 0 83.10 68.3514.75 Both
chr 12 417483 417559 Arg TCT ccaatatcat ttttaacatt0 0 92.26 75.6616.60 Both
chr 13 593076 593152 Met CAT tgggaatttt ctcccacact0 0 85.74 63.3122.43 Both
chr 14 964941 965018 Pro GGG tttttgattg tgacttttaa0 0 66.35 40.4425.91 Both
chr 15 1020044 1020131 Ser GGA tttaaaaaaa tttaaaaatg0 0 70.08 38.0732.01 Both
chr 16 1041456 1041532 Arg CCT tacgtaaaat cttgcactat0 0 88.43 62.7025.73 Both
chr 17 1176672 1176747 Ala GGC ctttttaagt ttattctctc0 0 79.09 55.1523.94 Both
chr 18 1332315 1332390 Val GAC tttaacaaaa ttattacatt0 0 86.92 71.3415.58 Both
chr 19 1383175 1383089 Leu GAG taaattttta ttaagttttt0 0 53.63 21.2332.40 Both
chr 20 1383035 1382949 Leu CAA tttatgatac ttaccaatga0 0 72.32 45.7226.60 Both
chr 21 1380137 1380062 Thr TGT ttaatttatt gttaaaatgt0 0 96.71 76.0620.65 Both
chr 22 1380034 1379950 Tyr GTA caaatttttt tcgtttgttt0 0 59.67 21.3338.34 Both
chr 23 1379933 1379857 Gly TCC gtttttaggt gttttagggc0 0 97.38 77.9419.44 Both
chr 24 1379826 1379752 Thr GGT tttttgagac gttttataat0 0 83.62 63.2420.38 Both
chr 25 1378182 1378107 Trp CCA aggggaggtt ttcttcatcc0 0 72.12 53.1918.93 Both
chr 26 1316399 1316308 Ser GCT ctttttacaa gcctttttgc0 0 69.60 35.6333.97 Both
chr 27 1127958 1127884 Gly GCC gaaaaagagt taacttaagc0 0 85.93 63.3722.56 Both
chr 28 1127651 1127565 Leu TAA agcctgaatt ttgtttgagc0 0 69.17 44.2824.89 Both
chr 29 1127499 1127425 Cys GCA taaagtttaa tatattaggt0 0 72.62 46.0126.61 Both
chr 30 1127393 1127306 Ser TGA gtaaatataa cttgattaaa0 0 71.62 42.9928.63 Both
chr 31 1101541 1101467 Gln TTG ttggttttat ttctttttac0 0 72.57 45.3427.23 Both
chr 32 1101438 1101362 Met CAT cgtattttat atctctttta0 0 84.27 55.9428.33 Both
chr 33 867188 867112 Arg GCG ttctttagaa tttaatgagt0 0 69.51 43.8825.63 Both
chr 34 357600 357516 Leu TAG gcgatggtgt cgactttagt0 0 79.22 51.6527.57 Both
chr 35 260784 260710 Asn GTT caagcgaaat ttctttgcta0 0 79.87 49.5530.32 Both
chr 36 3089 3014 Phe GAA gcttttgctt tttcaaaccc0 0 84.96 60.1024.86 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.