GtRNAdb

tRNAscan-SE Analysis of Helicobacter acinonychis Sheeba

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Predicted tRNA Secondary Structures


Click on "View tRNA" buttons to view 2-D tRNA structures

Cove-predicted tRNA secondary structures rendered by NAVIEW (c) 1988 Robert E. Bruccoleri


chr.trna17 (1176672-1176747)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (1176705-1176707)	Score: 79.09
Seq: GGGGTGTTAGCTCAGTTGGGAGAGTGCAACGCTGGCAGCGTTGAGGtCAGGGGTTCGAACCCCCTACACTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna8 (362491-362566)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (362524-362526)	Score: 89.75
Seq: GGGGAATTAGCTCAGTTGGGAGAGCGCCTGTTTTGCACGCAGGAGGtCAGCGGTTCGATTCCGCTATTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna16 (1041456-1041532)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (1041490-1041492)	Score: 88.43
Seq: GTCCTTGTAGCTCAGCTGGAtAGAGCGTACGATTCCTAATCGTAAGGtCGTGGGTTCGAATCCCGCCAAGGACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna33 (867188-867112)	Length: 77 bp
Type: Arg	Anticodon: GCG at 35-37 (867154-867152)	Score: 69.51
Seq: GTGCTCGTAGCTCAGCTGAAtAGAGCAACAGGTTGCGGTCCTGTAGGtCGGGGGTTTGAATCCCTCCGAGCACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna11 (417389-417465)	Length: 77 bp
Type: Arg	Anticodon: TCG at 35-37 (417423-417425)	Score: 83.10
Seq: GCGTTCGTAGCTCAATTGGAtAGAGCACCAGACTTCGGATCTGGGGGtTAGGGGTTCGACTCCCTTCGGGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna12 (417483-417559)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (417517-417519)	Score: 92.26
Seq: GCGCTTGTAGCTCAGCTGGAtAGAGCAACAGCCTTCTAAGCCGTAGGtCGCAGGTTCGAGTCCTGCCAAGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna35 (260784-260710)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (260752-260750)	Score: 79.87
Seq: TCCAGATTAGCTCAGCGGTAGAGTAGGCGGCTGTTAACCGCTTGGtCGTAGGTTCGAATCCTACATCTGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna4 (214879-214955)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (214913-214915)	Score: 91.95
Seq: GGAGCGGTAGTTCAGCTGGTtAGAATATCTGCCTGTCACGCAGGGGGtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna29 (1127499-1127425)	Length: 75 bp
Type: Cys	Anticodon: GCA at 33-35 (1127467-1127465)	Score: 72.62
Seq: GGCGACATAGCCAAGTGGTAAGGCATGGGTCTGCAAAACCTTGATtCCCCAGTTCGAATCTGGGTGTCGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
                    
chr.trna31 (1101541-1101467)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (1101509-1101507)	Score: 72.57
Seq: TGGGGTGTCGCCAAGCGGTAAGGCACCAGGTTTTGGTCCTGGCATtCCGAGGTTCGAATCCTTGCACCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna5 (215015-215090)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (215049-215051)	Score: 52.89
Seq: GACCCTTTCATCTAGTGGCcaAGGATACCACCCTTTCACGGTGGAAACGGAAGTTCAAATCTTTCAAGGGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna2 (214649-214723)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (214682-214684)	Score: 63.09
Seq: GGCTCCTTCATCTAGTGGTtAGGATACCACCCTTTCACGGTGGTTACAGGGGTTCAAATCCCCTAGGAGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna27 (1127958-1127884)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1127926-1127924)	Score: 85.93
Seq: GCGGGAATAGCTCAGTGGTAGAGCACGACCTTGCCAAGGTCGGGGcCGCGGGTTCGATCCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna23 (1379933-1379857)	Length: 77 bp
Type: Gly	Anticodon: TCC at 35-37 (1379899-1379897)	Score: 97.38
Seq: GCGGGAATAGCTCAGTTGGCtAGAGCATCAGCCTTCCAAGCTGAGGGtCGCGGGTTCGAGCCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna10 (417248-417324)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (417282-417284)	Score: 77.54
Seq: GTGGGAGTAGCTCAGTCGGTtAGAGCATCAGATTGTGGTCCTGAGGGtCGTGGGTTCGATTCCCATCTTCCACCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna7 (362398-362474)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (362432-362434)	Score: 90.80
Seq: GGGCTTATAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGAGGTTCAACTCCTCCTAAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna20 (1383035-1382949)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (1383001-1382999)	Score: 72.32
Seq: GCCGAAGTGGTGGAATTGGTaGACACGCTAGACTCAAAATCTGGTGGGAGCAATCTCGTGTCGGTTCGAGTCCGACCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna19 (1383175-1383089)	Length: 87 bp
Type: Leu	Anticodon: GAG at 35-37 (1383141-1383139)	Score: 53.63
Seq: GCATTGGTGGTGGAATTGGTaGACACGCCATCTTGAGGGGGTGGTGGGAGCAATCTCGTGCGAGTTCGAGTCTCGCCCAGTGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna28 (1127651-1127565)	Length: 87 bp
Type: Leu	Anticodon: TAA at 35-37 (1127617-1127615)	Score: 69.17
Seq: GCCCAGGTGGTGGAATTGGTaGACACAAGGGACTTAAAATCCCTCGGTAGCAATACCGTGCCGGTTCAAGTCCGGCTTTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna34 (357600-357516)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (357566-357564)	Score: 79.22
Seq: GCGGAAGTGGCGAAATTGGTaGACGCACTAGACTTAGGATCTAGCGCCGCAAGGCATGAAGGTTCGATTCCTTTCTTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna1 (214561-214636)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (214594-214596)	Score: 90.56
Seq: GATCCGTTAGCTCAGCTGGTAGAGCAATTCCCTTTTAAGGAATGGGtCGTTGGTTCAAATCCAACACGGATCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna6 (342648-342725)	Length: 78 bp
Type: Met	Anticodon: CAT at 36-38 (342683-342685)	Score: 82.06
Seq: GTCAAGGTAGCTCAGCTGGTttAGAGCGCTGGTCTCATAAGCCGGAGGtCGGGGGTTCAAGTCCCCCTCTTGACACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna32 (1101438-1101362)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1101404-1101402)	Score: 84.27
Seq: CGCGGAGTAGAGCAGTCcGGTAGCTCGTTGGGCTCATAACCCAAAGGtCAGTGGTTCAAATCCATTCTCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
                    
chr.trna13 (593076-593152)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (593110-593112)	Score: 85.74
Seq: GGATTCTTAGCTCAGCTGGTcAGAGCACTCGGCTCATAACCGATTGGtCGTAGGTTCAAGTCCTACAGAATCCACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
                    
chr.trna36 (3089-3014)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (3056-3054)	Score: 84.96
Seq: GGCTTGATAGCTCAGTCGGTAGAGCAGAAGACTGAAAATCTTCGTGtCGGTGGTTCGATTCCGCCTCAAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna14 (964941-965018)	Length: 78 bp
Type: Pro	Anticodon: GGG at 36-38 (964976-964978)	Score: 66.35
Seq: CGGAGTATGGCGCAGCCtGATtAGCGCGCACCCTTGGGGTGGGTGAGGtCGTGGGTTTGAATCCCGCTACTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna9 (417108-417185)	Length: 78 bp
Type: Pro	Anticodon: TGG at 36-38 (417143-417145)	Score: 92.94
Seq: CGGGGCGTAGCGCAGTCtGGTtAGCGCACTTGGTTTGGGACCAAGGGGtCGAAGGTTCGAATCCTTTCGCCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna26 (1316399-1316308)	Length: 92 bp
Type: Ser	Anticodon: GCT at 36-38 (1316364-1316362)	Score: 69.60
Seq: GGACAGGTGGGTGAGTTGGCtgAAACCACATCCCTGCTAAGGATGCGTAGCCGTCAAGGTTAcCGAGGGTTCGAATCCCTCCCTGTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<...>.>......<.<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna15 (1020044-1020131)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (1020078-1020080)	Score: 70.08
Seq: GGGGAGATGTCCGAGTGGTtgAAGGAGCACGCCTGGAACGCGTGTAAGGTGCAAGCCTTCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna30 (1127393-1127306)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (1127359-1127357)	Score: 71.62
Seq: CGGGAGATGGCTGAGTGGTtgAAAGCGGCGGTCTTGAAAACCGTTGAGGGTCATGCCTCCGGGGGTTCGAATCCCTCTCTCCCGGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna24 (1379826-1379752)	Length: 75 bp
Type: Thr	Anticodon: GGT at 33-35 (1379794-1379792)	Score: 83.62
Seq: GCCTGTATAGCTCAGGGGTAGAGCACTTCCTTGGTAAGGAAGAGGtCGGCGGTTCAATTCCGCTTATAGGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna21 (1380137-1380062)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (1380104-1380102)	Score: 96.71
Seq: GCTGGCTTAGCTCAGTTGGTAGAGCAGCTGCCTTGTAAGCAGCAGGtCGGGGGTTCAAGTCCCTTAGCCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna25 (1378182-1378107)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (1378149-1378147)	Score: 72.12
Seq: AGGTCAGTAGCTCCAATGGTAGAGCACCGGTCTCCAAAACCGATTGtTGGGGGTTCGAGTCCCTCCTGACCTGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
                    
chr.trna22 (1380034-1379950)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (1380000-1379998)	Score: 59.67
Seq: GGTGAGATACTCAAGTGGCcaACGAGGGCAGACTGTAAATCTGCTGACTATGTCTtCCGTGGTTCGAATCCACGTCTCACCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>><<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna18 (1332315-1332390)	Length: 76 bp
Type: Val	Anticodon: GAC at 34-36 (1332348-1332350)	Score: 86.92
Seq: GGTCGCGTAGCTCAGTTGGTAGAGCACTACCTTGACATGGTAGTGGtCGCTGGTTCAAGTCCAGTCGTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna3 (214760-214835)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (214793-214795)	Score: 92.56
Seq: GGTCGCTTAGCTCAGTTGGTAGAGCGCTACCCTTACAAGGTAGATGtCATAAGTTCGAGTCTTATAGCGACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
         



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.