GtRNAdb

tRNAscan-SE Analysis of Heliobacterium modesticaldum Ice1

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA108
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs109


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
5
CGC
1
TGC
2
8
GlyACC
 
GCC
7
CCC
1
TCC
1
9
ProAGG
 
GGG
3
CGG
2
TGG
1
6
ThrAGT
 
GGT
3
CGT
1
TGT
2
6
ValAAC
 
GAC
4
CAC
1
TAC
2
7

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
2
CGA
1
TGA
1
ACT
 
GCT
2
 
 
 
 
6
ArgACG
3
GCG
 
CCG
2
TCG
 
 
 
 
 
CCT
1
TCT
1
7
LeuAAG
 
GAG
2
CAG
4
TAG
1
 
 
 
 
CAA
1
TAA
1
9

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
3
 
 
 
 
4
AsnATT
 
GTT
4
 
 
 
 
4
Lys 
 
 
 
CTT
 
TTT
5
5
AspATC
 
GTC
4
 
 
 
 
4
Glu 
 
 
 
CTC
 
TTC
6
6
HisATG
 
GTG
2
 
 
 
 
2
Gln 
 
 
 
CTG
 
TTG
4
4

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
4
 
 
TAT
 
4
Met 
 
 
 
CAT
8
 
 
8
TyrATA
 
GTA
4
 
 
 
 
4
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
3
 
 
 
 
3
Trp 
 
 
 
CCA
2
 
 
2
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.