GtRNAdb

tRNAscan-SE Analysis of Heterocephalus glaber (naked mole-rat) (BGI HetGla 1.0 Jul 2011)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA360
Selenocysteine tRNAs (TCA)8
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes0
Total tRNAs369


Intron Summary

tRNAs with introns
24
Ala
CGC
1
Thr
AGT
1
Arg
TCT
4
Leu
CAA
4
His
GTG
1
Ile
TAT
3
Tyr
GTA
9
Cys
GCA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
48
GGC
6
CGC
6
TGC
5
65
GlyACC
4
GCC
10
CCC
4
TCC
4
22
ProAGG
13
GGG
 
CGG
3
TGG
5
21
ThrAGT
14
GGT
2
CGT
4
TGT
3
23
ValAAC
14
GAC
1
CAC
6
TAC
3
24

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
6
GGA
 
CGA
3
TGA
3
ACT
1
GCT
7
 
 
 
 
20
ArgACG
5
GCG
 
CCG
4
TCG
4
 
 
 
 
CCT
5
TCT
6
24
LeuAAG
5
GAG
 
CAG
5
TAG
5
 
 
 
 
CAA
5
TAA
4
24

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
6
 
 
 
 
6
AsnATT
 
GTT
9
 
 
 
 
9
Lys 
 
 
 
CTT
15
TTT
9
24
AspATC
2
GTC
8
 
 
 
 
10
Glu 
 
 
 
CTC
5
TTC
6
11
HisATG
 
GTG
5
 
 
 
 
5
Gln 
 
 
 
CTG
6
TTG
3
9

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
8
GAT
 
 
 
TAT
3
11
Met 
 
 
 
CAT
13
 
 
13
TyrATA
 
GTA
9
 
 
 
 
9
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
24
 
 
 
 
24
Trp 
 
 
 
CCA
6
 
 
6
SelCys 
 
 
 
 
 
TCA
8
8

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.