GtRNAdb

tRNAscan-SE Analysis of Lactobacillus johnsonii NCC 533

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 19503 19578 Thr AGT atctaaataa taagaacaaa0 0 82.73 59.8622.87 Both
chr 2 21315 21390 Thr AGT tgtgagaaac tttaaaagtc0 0 82.73 59.8622.87 Both
chr 3 209038 209110 Thr GGT attgatatct tagtgaataa0 0 63.60 40.8222.78 Both
chr 4 327595 327669 Gly GCC taaatgtact gtataaaaga0 0 87.51 69.0818.43 Both
chr 5 327710 327783 Pro CGG ttttgttatt tatttgatta0 0 58.48 54.464.02 Eufind
chr 6 340597 340667 Ser TGA agagcattac ttgattagct0 0 40.16 20.0820.08 Eufind
chr 7 340727 340798 Glu TTC ctaatctatt tgggaactaa0 0 62.50 29.3233.18 Both
chr 8 340937 341018 Tyr GTA aacatagttt taaggacaca0 0 46.08 12.3433.74 Both
chr 9 341099 341172 Phe GAA agagcatcat taagctaaga0 0 52.20 30.7921.41 Both
chr 10 563466 563538 Asn GTT tttttaatat tttatggcaa0 0 85.15 58.5226.63 Both
chr 11 563561 563650 Ser GGA ataaaataat ttggagaata0 0 55.38 14.9340.45 Both
chr 12 563769 563840 Glu TTC tgtgagatct ttgccatatt0 0 63.58 37.3326.25 Both
chr 13 563864 563936 Val TAC tatggttgtt tcgttcacgg0 0 86.40 70.3716.03 Both
chr 14 707462 707534 Arg CCT aactagtcct tacatgaaaa0 0 55.30 28.9226.38 Both
chr 15 828305 828376 Glu CTC atgttgaatt tatactgaga0 0 60.33 29.3231.01 Both
chr 16 828382 828454 Gln CTG ggtgatatac tacgttaccg0 0 57.22 23.4633.76 Both
chr 17 1888241 1888168 Ile GAT aagcataatc ttcaaagcaa0 0 91.79 70.2821.51 Both
chr 18 1888132 1888060 Ala TGC aggcaatgat ttgagacata0 0 76.90 63.8613.04 Both
chr 19 1884839 1884764 Asn GTT tttttaatat atggagtcaa0 0 93.45 66.7926.66 Both
chr 20 1882726 1882653 Ile GAT aagcataatc ttcaaagcaa0 0 91.79 70.2821.51 Both
chr 21 1882617 1882545 Ala TGC aggcaatgat ttgagacata0 0 76.90 63.8613.04 Both
chr 22 1879324 1879252 Asn GTT tttttaatat taaagtgatg0 0 85.15 58.5226.63 Both
chr 23 1680912 1680840 Val TAC cgtgctaaat ttgagtcgtt0 0 86.40 70.3716.03 Both
chr 24 1680837 1680765 Lys TTT atcctccatt ttggcccaga0 0 84.26 55.8728.39 Both
chr 25 1680744 1680660 Leu TAG aaaaactcaa tgccgattta0 0 69.44 48.3021.14 Both
chr 26 1680658 1680586 Thr TGT cccgtaccat taaaaattga0 0 88.52 70.2818.24 Both
chr 27 1680567 1680496 Gly GCC gaataaaaat tatcattatc0 0 83.89 62.1621.73 Both
chr 28 1680483 1680398 Leu TAA tcattatcat tataatgatg0 0 67.41 41.5925.82 Both
chr 29 1680388 1680315 Arg ACG atataatgat cacttcggga0 0 70.13 52.4617.67 Eufind
chr 30 1680309 1680236 Pro TGG gtgcacactt ttgtagctta0 0 87.66 66.8720.79 Both
chr 31 1680205 1680132 Met CAT agttacagat tagaggtaaa0 0 73.74 65.238.51 Both
chr 32 1680118 1680045 Met CAT aggtaaactt taggatcttg0 0 89.60 63.9525.65 Both
chr 33 1680013 1679940 Met CAT ataaaaacat tatggtccct0 0 76.97 51.3825.59 Both
chr 34 1679936 1679864 Asp GTC cccgcaatat taatggctcg0 0 62.03 34.1427.89 Both
chr 35 1679859 1679787 Phe GAA ggaccgtaat ttaggaagca0 0 77.44 61.5015.94 Both
chr 36 1679769 1679696 Gly TCC gcaagaagtt aaggaaaggg0 0 66.15 38.5927.56 Both
chr 37 1679687 1679614 Ile GAT caaaggaaag ttggagattt0 0 91.79 70.2821.51 Both
chr 38 1679611 1679522 Ser GCT taggcccatt ctttaaagta0 0 56.58 27.2729.31 Both
chr 39 1678307 1678236 Glu TTC aaaaacgtat ttaccatatt0 0 64.02 33.5630.46 Both
chr 40 1678209 1678119 Ser TGA tggtataaat taatcatcgc0 0 55.88 22.5733.31 tRNAscan
chr 41 1678111 1678038 Met CAT ccttaatcat tatggtccct0 0 77.97 49.5528.42 Both
chr 42 1678034 1677962 Asp GTC cccgcaatat taaatggctc0 0 75.58 47.6927.89 Both
chr 43 1677956 1677884 Phe GAA gaccgtaaat ttctggaggc0 0 77.44 61.5015.94 Both
chr 44 1677879 1677798 Tyr GTA gcgccattct tttaaatagg0 0 64.08 32.7031.38 Both
chr 45 1677790 1677720 Trp CCA ccatttaaat tttttaatat0 0 45.48 19.7725.71 Eufind
chr 46 1677705 1677630 His GTG taatattatg acattgggat0 0 60.26 39.9820.28 Both
chr 47 1677625 1677554 Gln TTG gccctaacat tttgttaatg0 0 63.39 34.2029.19 Both
chr 48 1677533 1677463 Cys GCA atcagaggtt tcgcctgaat0 0 67.47 43.1824.29 Both
chr 49 1677431 1677348 Leu CAA tttcatttat tttattcaga0 0 61.65 35.5826.07 Both
chr 50 1666463 1666391 Val TAC cgtgctaaat ttgagtcgtt0 0 86.40 70.3716.03 Both
chr 51 1666388 1666316 Lys TTT atcctccatt ttggcccaga0 0 84.26 55.8728.39 Both
chr 52 1666295 1666211 Leu TAG aaaaactcaa tgccgattta0 0 69.44 48.3021.14 Both
chr 53 1666209 1666137 Thr TGT cccgtaccat taaaaattga0 0 88.52 70.2818.24 Both
chr 54 1666118 1666047 Gly GCC gaataaaaat tatcattatc0 0 83.89 62.1621.73 Both
chr 55 1666034 1665949 Leu TAA tcattatcat tataatgatg0 0 67.41 41.5925.82 Both
chr 56 1665939 1665866 Arg ACG atataatgat cacttcggga0 0 70.13 52.4617.67 Eufind
chr 57 1665860 1665787 Pro TGG gtgcacactt ttgtagctta0 0 87.66 66.8720.79 Both
chr 58 1665756 1665683 Met CAT agttacagat tagaggtaaa0 0 73.74 65.238.51 Both
chr 59 1665669 1665596 Met CAT aggtaaactt taggatcttg0 0 89.60 63.9525.65 Both
chr 60 1665564 1665491 Met CAT ataaaaacat tatggtccct0 0 76.97 51.3825.59 Both
chr 61 1665487 1665415 Asp GTC cccgcaatat taatggctcg0 0 62.03 34.1427.89 Both
chr 62 1665410 1665338 Phe GAA ggaccgtaat ttaggaagca0 0 77.44 61.5015.94 Both
chr 63 1665320 1665247 Gly TCC gcaagaagtt aaggaaaggg0 0 66.15 38.5927.56 Both
chr 64 1665238 1665165 Ile GAT caaaggaaag ttggagattt0 0 91.79 70.2821.51 Both
chr 65 1665162 1665073 Ser GCT taggcccatt ctttacagat0 0 56.58 27.2729.31 Both
chr 66 1659788 1659716 Asn GTT tttttaatat taaagtgatg0 0 85.15 58.5226.63 Both
chr 67 1643839 1643767 Thr CGT tagtgttaat tattttttta0 0 78.85 55.7223.13 Both
chr 68 1633407 1633336 Gln TTG gcttgaagga tagatttgcc0 0 62.43 30.1832.25 Both
chr 69 1631500 1631419 Tyr GTA gtaacgtttc ttgctgaatt0 0 64.08 32.7031.38 Both
chr 70 1631363 1631292 Gln TTG ttcaatcaaa tagttcgaaa0 0 62.43 30.1832.25 Both
chr 71 1609384 1609296 Leu AAG tttaagtacc ctaagaaaag0 0 62.75 36.9825.77 Both
chr 72 1554034 1553948 Leu CAG tcaaaaagtt ataaaagaga0 0 58.98 21.3437.64 Both
chr 73 1454747 1454674 Arg TCT taaggaattt ctgatatgac0 0 76.81 46.7730.04 Both
chr 74 1330556 1330469 Ser CGA cgttgtaatt tatttgaata0 0 73.06 45.2427.82 Both
chr 75 1317009 1316937 Glu TTC ttcctagtct tgggaattaa0 0 60.61 29.3531.26 Both
chr 76 775903 775832 Pseudo CCG ttagtttgtc taaaaggaac0 0 32.37 4.8627.51 Both
chr 77 228961 228891 Gly CCC ttttgcttat tatattaaaa0 0 54.31 36.4617.85 Both
chr 78 87689 87617 Lys CTT gttatccaat tatttttgaa0 0 84.99 60.1424.85 Both
chr 79 86009 85937 Lys CTT gttatccaat tatttttgaa0 0 84.99 60.1424.85 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.