GtRNAdb

tRNAscan-SE Analysis of Loxodonta africana (elephant) (Broad/July 2009)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA1978
Selenocysteine tRNAs (TCA)24
Possible suppressor tRNAs (CTA,TTA)2
tRNAs with undetermined
or unknown isotypes
5
Predicted pseudogenes0
Total tRNAs2009


Intron Summary

tRNAs with introns
60
Gly
TCC
3
Arg
TCT
9
Leu
AAG
1
Leu
CAA
17
Leu
TAA
6
Ile
TAT
4
Tyr
ATA
1
Tyr
GTA
19


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
54
GGC
 
CGC
15
TGC
53
122
GlyACC
4
GCC
33
CCC
72
TCC
619
728
ProAGG
16
GGG
 
CGG
3
TGG
14
33
ThrAGT
14
GGT
1
CGT
10
TGT
22
47
ValAAC
41
GAC
1
CAC
35
TAC
50
127

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
29
GGA
 
CGA
4
TGA
7
ACT
3
GCT
76
 
 
 
 
119
ArgACG
14
GCG
 
CCG
3
TCG
18
 
 
 
 
CCT
16
TCT
90
141
LeuAAG
22
GAG
 
CAG
10
TAG
11
 
 
 
 
CAA
17
TAA
15
75

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
32
 
 
 
 
33
AsnATT
4
GTT
51
 
 
 
 
55
Lys 
 
 
 
CTT
36
TTT
60
96
AspATC
 
GTC
20
 
 
 
 
20
Glu 
 
 
 
CTC
24
TTC
114
138
HisATG
3
GTG
27
 
 
 
 
30
Gln 
 
 
 
CTG
28
TTG
14
42

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
43
GAT
 
 
 
TAT
7
50
Met 
 
 
 
CAT
50
 
 
50
TyrATA
1
GTA
19
 
 
 
 
20
Supres 
 
 
 
CTA
 
TTA
2
2
CysACA
1
GCA
28
 
 
 
 
29
Trp 
 
 
 
CCA
23
 
 
23
SelCys 
 
 
 
 
 
TCA
24
24

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.