GtRNAdb

tRNAscan-SE Analysis of Loxodonta africana (elephant) (Broad/July 2009)

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>> Genome Seq
tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
scaffold_204 12 268969 269041 Ala AGC gacaccggga gttttatatg0 0 39.60 28.7510.85 Both
scaffold_139 63 1460155 1460083 Ala AGC gcagccatgt agttttgcat0 0 41.60 26.0115.59 Both
scaffold_182 11 621984 621912 Ala AGC gcaaccttgc aattttgcat0 0 41.83 24.6717.16 Both
scaffold_108 283 138367 138296 Ala AGC tatttaaaaa tgtacccttt0 0 45.40 40.395.01 Both
scaffold_264 6 137603 137674 Ala AGC tatttaaaat tgtacgcttt0 0 45.40 40.395.01 Both
scaffold_204 8 186381 186453 Ala AGC taaagcgcaa ggttttgcac0 0 47.94 27.2220.72 Both
scaffold_108 277 260829 260758 Ala AGC tatgcaaaat tgttaccctt0 0 49.60 42.427.18 Both
scaffold_204 16 289457 289529 Ala AGC taaagcgcaa agttttgcac0 0 49.83 26.5023.33 Both
scaffold_143 16 392455 392526 Ala AGC tatttaataa tgtacgcttt0 0 49.91 36.2713.64 Both
scaffold_139 51 1055995 1056067 Ala AGC taaagcgcaa cattttgcac0 0 50.78 28.4222.36 Both
scaffold_143 136 810627 810556 Ala AGC tatttaaaat tgtacccttt0 0 52.26 45.057.21 Both
scaffold_143 23 576657 576728 Ala AGC tgtttaaaat tgtacccttt0 0 53.24 40.9512.29 Both
scaffold_6 735 54840004 54840075 Ala AGC caggaatacc ctttagacag0 0 53.49 34.9718.52 Both
scaffold_204 17 345854 345926 Ala AGC tgtaccgtgt aattttgtgt0 0 53.52 33.4020.12 Both
scaffold_0 53 3180757 3180828 Ala AGC ctgcatgtca ctttggagcc0 0 55.83 40.5115.32 Both
scaffold_204 5 161529 161601 Ala AGC gagacagcga gttttatatg0 0 56.91 32.4824.43 Both
scaffold_5 622 47208491 47208562 Ala AGC gacagtaact ctttaggaaa0 0 57.65 41.0416.61 Both
scaffold_139 44 921346 921418 Ala AGC ctaggtatgt gattttgcac0 0 58.07 33.7424.33 Both
scaffold_139 53 1118001 1118073 Ala AGC taaggcacgt cattttgcac0 0 58.07 33.7424.33 Both
scaffold_204 11 228464 228536 Ala AGC taaagcgcac gattttgcac0 0 58.07 33.7424.33 Both
scaffold_204 27 138562 138490 Ala AGC aggcaagtga gttttttcac0 0 58.57 41.9816.59 Both
scaffold_139 60 1659420 1659492 Ala AGC tgagccatgc aattttgcat0 0 59.07 41.7517.32 Both
scaffold_24 260 35916586 35916657 Ala AGC gctaagttct tctttcattc0 0 60.62 51.499.13 Eufind
scaffold_139 62 1515538 1515466 Ala AGC ttagccaagt acttttgcat0 0 60.85 40.7220.13 Both
scaffold_182 20 53615 53543 Ala AGC ggtaccgtat aattttgcat0 0 60.85 40.7220.13 Both
scaffold_182 2 92874 92946 Ala AGC gcagcaacgt aattttgcat0 0 60.85 40.7220.13 Both
scaffold_204 20 398983 398911 Ala AGC gcgacaacgt aattttgcat0 0 60.85 40.7220.13 Both
scaffold_139 66 1244133 1244061 Ala AGC tgtaccgcgt aattttgcat0 0 62.52 38.0324.49 Both
scaffold_139 41 872771 872843 Ala AGC taaagggtat gattttgcac0 0 62.65 38.1724.48 Both
scaffold_44 2 67392 67464 Ala AGC gtatccagcc gttttatgtt0 0 63.06 39.9523.11 Both
scaffold_20 524 40592456 40592528 Ala AGC tgcagcagct agtgaggctt0 0 63.68 41.0222.66 Both
scaffold_8 137 12280894 12280966 Ala AGC gcccagcggt gtttttctcc0 0 63.68 41.0222.66 Both
scaffold_143 43 854324 854395 Ala AGC gctgtcgccc ctttaccttc0 0 65.16 43.7721.39 Both
scaffold_108 284 118343 118272 Ala AGC tctggtagca agtgttattt0 0 65.84 49.7116.13 Both
scaffold_59 52 4931741 4931812 Ala AGC tgaaggcagt ttctttggaa0 0 66.32 45.2221.10 Both
scaffold_204 6 162852 162924 Ala AGC cccagaggtg gttttgactg0 0 67.05 43.9823.07 Both
scaffold_264 8 167874 167945 Ala AGC tcttgtggca agtgttattt0 0 68.04 42.5125.53 Both
scaffold_108 40 579640 579711 Ala AGC aatctaagaa tcggtcggtt0 0 73.13 50.2522.88 Both
scaffold_143 11 226090 226161 Ala AGC ttcttgtaat agtgttattt0 0 74.95 49.4225.53 Both
scaffold_143 131 971171 971100 Ala AGC tcttgtaaca agtgttattt0 0 74.95 49.4225.53 Both
scaffold_143 138 777589 777518 Ala AGC tcttgtaaca agtgttatct0 0 74.95 49.4225.53 Both
scaffold_143 25 606879 606950 Ala AGC tcttgtaaca agtgttatct0 0 74.95 49.4225.53 Both
scaffold_143 6 55520 55591 Ala AGC tcttgtaaca agtgttattt0 0 74.95 49.4225.53 Both
scaffold_412 5 90942 91013 Ala AGC tcttgtaaca agtgttattt0 0 74.95 49.4225.53 Both
scaffold_108 271 373145 373074 Ala AGC ttctcccaat tatttggctt0 0 75.17 52.3022.87 Both
scaffold_108 46 675101 675172 Ala AGC aacatgcagt ttcttttacg0 0 75.78 57.5918.19 Both
scaffold_143 17 417504 417575 Ala AGC tcttgtggca agtgttattt0 0 76.69 51.1625.53 Both
scaffold_108 251 717632 717561 Ala AGC tttcacagtt ccagttttga0 0 76.69 53.0523.64 Both
scaffold_108 273 338015 337944 Ala AGC tttcctaatg tgtttggctt0 0 77.14 52.0225.12 Both
scaffold_135 49 479464 479393 Ala AGC gtttgcgcca cttttgcttc0 0 77.18 53.3823.80 Both
scaffold_135 50 473342 473271 Ala AGC tgctcctcaa tttttagtct0 0 77.18 53.3823.80 Both
scaffold_108 263 481585 481514 Ala AGC cacataaaaa tatggtggtc0 0 77.42 52.2625.16 Both
scaffold_108 264 474217 474146 Ala AGC ggcttaacaa tctggatgcc0 0 77.42 52.2625.16 Both
scaffold_135 52 466174 466103 Ala AGC cgttcgacag ttttcttttc0 0 77.48 54.2423.24 Both
scaffold_10 1313 30858244 30858174 Ala CGC cagacagatg ccaatggata0 0 51.06 38.4712.59 Both
scaffold_135 13 212162 212232 Ala CGC tcagtcttca cttcaccttt0 0 55.17 41.7013.47 Eufind
scaffold_109 12 2204320 2204390 Ala CGC ttattgtgag tctcgtgggc0 0 57.87 50.906.97 Eufind
scaffold_17 820 33794339 33794269 Ala CGC agtcctcata cctcgtgtgt0 0 63.32 44.7718.55 Eufind
scaffold_135 51 468019 467948 Ala CGC tatcctgcaa gctcatattt0 0 68.25 47.9520.30 Both
scaffold_143 62 1075668 1075739 Ala CGC accagcaatc tttcatcttt0 0 68.96 50.6318.33 Both
scaffold_108 38 562223 562294 Ala CGC caactagttc gctgggtttt0 0 69.41 51.3518.06 Both
scaffold_135 17 312429 312500 Ala CGC tcaggcttca cttcatggtt0 0 70.30 51.8218.48 Both
scaffold_143 121 1101683 1101612 Ala CGC ttggtggtaa atttaccatt0 0 70.59 49.1221.47 Both
scaffold_143 71 1239309 1239380 Ala CGC tcagaggtca cttcaccttt0 0 71.69 51.4320.26 Both
scaffold_108 44 620082 620153 Ala CGC taagccgtct cttcaccttt0 0 72.31 50.8421.47 Both
scaffold_3 1555 71772868 71772797 Ala CGC agatcggctg aacagccagt0 0 73.12 53.5119.61 Both
scaffold_44 795 85215 85144 Ala CGC ttcgagggct accttatttt0 0 74.81 51.2323.58 Both
scaffold_135 56 428381 428310 Ala CGC accctttact gtttctttgc0 0 77.46 54.1823.28 Both
scaffold_108 45 663366 663437 Ala CGC ttttctacca gagtggcttt0 0 78.91 55.3223.59 Both
scaffold_135 83 115328 115258 Ala TGC tacccagatg gaatttttct0 0 36.36 26.779.59 Both
scaffold_16 619 48464240 48464310 Ala TGC cacctctggg cctcatgcac0 0 36.98 18.4318.55 Both
scaffold_124 105 207474 207404 Ala TGC gtaaaggtgg cctcccacac0 0 37.76 30.217.55 Both
scaffold_12 1251 42504143 42504073 Ala TGC gaatatgaga cctcatgagc0 0 37.89 24.0713.82 Both
scaffold_139 68 1125961 1125889 Ala TGC cccagtcatc gttttgactg0 0 40.97 28.0512.92 Both
scaffold_18 1176 13817394 13817324 Ala TGC ttcagaaggg cctcatgcgc0 0 42.00 33.438.57 Both
scaffold_19 796 32599423 32599353 Ala TGC ggacagggag cttcatgtac0 0 42.60 26.5616.04 Both
scaffold_44 545 12386635 12386565 Ala TGC aatatgtgcc cctcatgtgc0 0 42.80 30.4312.37 Both
scaffold_102 78 4005042 4004970 Ala TGC aagagccatc gtttggaaac0 0 44.33 30.6713.66 Both
scaffold_135 84 104861 104790 Ala TGC tcttttaatg aatttttttc0 0 45.18 37.317.87 Both
scaffold_20 785 28160289 28160218 Ala TGC tcttctgggg cctcatgtgc0 0 45.75 29.5216.23 Both
scaffold_37 72 5388628 5388698 Ala TGC tgatgggcga tctcatgtgt0 0 46.13 31.4314.70 Both
scaffold_18 851 38676062 38675991 Ala TGC ttatacatct cggatgtttg0 0 48.00 42.235.77 Both
scaffold_143 122 1096484 1096414 Ala TGC ctcaccaggt gagtttttct0 0 48.16 42.785.38 Both
scaffold_4 2106 26762051 26761980 Ala TGC cacacagcca aaatggcatt0 0 48.60 43.015.59 Both
scaffold_17 720 39997067 39996997 Ala TGC taaaaatgag cctcatgtgc0 0 52.45 34.4018.05 Both
scaffold_44 207 10443687 10443757 Ala TGC gggtgtggga ctttatgtgc0 0 53.51 40.6112.90 Both
scaffold_7 1290 76823203 76823133 Ala TGC tatctttgag cctcatatgc0 0 55.10 29.8825.22 Both
scaffold_41 532 9502103 9502033 Ala TGC ttatatgggt cctcatgcgc0 0 55.27 41.9713.30 Eufind
scaffold_4 1815 49326875 49326805 Ala TGC acatacagaa cttcatgtgc0 0 55.28 37.0518.23 Both
scaffold_40 187 18420769 18420839 Ala TGC attactgaca ccttaagcat0 0 55.55 50.015.54 Eufind
scaffold_659 2 7563 7493 Ala TGC caccaaggag cctcacacac0 0 55.77 46.539.24 Eufind
scaffold_67 224 10903875 10903945 Ala TGC caccagggag cctcacacac0 0 55.77 46.539.24 Eufind
scaffold_143 114 1208892 1208822 Ala TGC tctgcaaatg gggtttttct0 0 56.23 33.7622.47 Both
scaffold_139 52 1095031 1095103 Ala TGC cgcagacatc gttttgaccg0 0 56.38 33.4222.96 Both
scaffold_33 142 12038912 12038982 Ala TGC cactcaaagg cctcatacac0 0 57.95 45.9911.96 Both
scaffold_7 517 42880480 42880550 Ala TGC ttaacatgag cttcatgcac0 0 59.72 54.355.37 Eufind
scaffold_40 152 16416040 16416110 Ala TGC aatatatggg acttcatgtg0 0 60.88 51.719.17 Eufind
scaffold_204 9 209030 209102 Ala TGC ggcgggaatc attttgaccg0 0 61.60 40.3421.26 Both
scaffold_4 1977 38139904 38139834 Ala TGC aaataagggg ccccaagcac0 0 61.80 48.6413.16 Eufind
scaffold_139 49 1034470 1034542 Ala TGC cccaggcgta gttttgaccc0 0 62.28 40.4821.80 Both
scaffold_84 30 1859463 1859534 Ala TGC agttgtgggt gcggtttttc0 0 62.55 53.898.66 Both
scaffold_27 850 9038703 9038633 Ala TGC tatatagggg cctcaggcac0 0 63.00 44.7718.23 Both
scaffold_3 866 77164963 77165033 Ala TGC ttttgtggag tcccaagcac0 0 63.10 54.828.28 Eufind
scaffold_143 84 1462496 1462567 Ala TGC tcagtcttca cttcaccatt0 0 63.85 43.1820.67 Eufind
scaffold_19 854 28077095 28077025 Ala TGC ccgttataag ccgcaagctc0 0 64.59 49.7314.86 Eufind
scaffold_143 90 1575487 1575558 Ala TGC tcagtcttca cttcaccatt0 0 65.59 48.9316.66 Eufind
scaffold_19 133 16505321 16505391 Ala TGC actaagggag cctcagcaca0 0 68.72 49.2019.52 Both
scaffold_135 11 176905 176976 Ala TGC tcaggcttct cttcaacttt0 0 69.23 47.7721.46 Both
scaffold_108 254 611961 611890 Ala TGC ttcccgagaa ggtttttttc0 0 70.25 49.4120.84 Both
scaffold_143 77 1348665 1348736 Ala TGC tcagtcttca cttcaccact0 0 71.22 49.4121.81 Both
scaffold_1465 1 2942 3013 Ala TGC tcagtcttca cttcaccatt0 0 71.22 49.4121.81 Both
scaffold_267 8 178517 178446 Ala TGC tcagtcttca cttcaccatt0 0 71.22 49.4121.81 Both
scaffold_318 3 66216 66287 Ala TGC tcagtcttca cttcaccatt0 0 71.22 49.4121.81 Both
scaffold_135 54 458598 458527 Ala TGC cctgcgagga atccttttcg0 0 72.61 49.4923.12 Both
scaffold_84 183 1853948 1853877 Ala TGC attagcgtct ctgctttttt0 0 72.71 49.1223.59 Both
scaffold_143 125 1073892 1073821 Ala TGC ctctatagaa ggatcttttc0 0 72.82 49.6923.13 Both
scaffold_135 20 380984 381055 Ala TGC tcagtcttca cttcaacttt0 0 73.33 51.8621.47 Both
scaffold_108 261 499652 499581 Ala TGC cgcatcgccg cggctgtttt0 0 73.81 55.0918.72 Both
scaffold_108 48 710213 710284 Ala TGC ttgcagcgtt ctttagctaa0 0 74.45 50.8623.59 Both
scaffold_1 1270 104286384 104286313 Ala TGC ttggtcggtt cgacgtgttt0 0 74.45 50.8623.59 Both
scaffold_122 10 953214 953285 Ala TGC tcacagcttt cttaagctaa0 0 74.45 50.8623.59 Both
scaffold_108 37 554130 554201 Ala TGC gctatagcct cgggtactgt0 0 77.79 56.0621.73 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
scaffold_108 192 2636775 2636703 Arg ACG ttctctgggt ttacccttct0 0 43.39 37.126.27 Both
scaffold_108 198 2457334 2457262 Arg ACG ttgcagggat ttattgccta0 0 60.98 43.0717.91 Eufind
scaffold_108 194 2579124 2579052 Arg ACG ttctctgggt ttacccttct0 0 63.09 44.2118.88 Both
scaffold_108 190 2685370 2685298 Arg ACG ttctctgttt ttacccttct0 0 64.83 45.9518.88 Both
scaffold_108 122 2891852 2891924 Arg ACG ctgcgtagac ttcccaagtg0 0 65.13 51.9213.21 Eufind
scaffold_8 2158 12279747 12279675 Arg ACG gttgtgtcta gtcttttatc0 0 65.15 48.5416.61 Both
scaffold_108 200 2427591 2427519 Arg ACG ctttgccaaa ttagcactta0 0 67.83 47.9519.88 Both
scaffold_108 79 2222680 2222752 Arg ACG tcacgtgtgc cttaacaccc0 0 68.07 51.1816.89 Both
scaffold_12 258 21841400 21841472 Arg ACG cagcaacacg aggtgtgtct0 0 68.07 51.1816.89 Both
scaffold_139 86 685371 685299 Arg ACG cttaccgtga tcacctttta0 0 68.07 51.1816.89 Both
scaffold_108 120 2865666 2865738 Arg ACG ctaaaggagt ctactgcctg0 0 68.28 48.3919.89 Both
scaffold_104 15 1612179 1612251 Arg ACG ccttgtctca gtgggacggg0 0 72.37 52.4919.88 Both
scaffold_44 789 228942 228870 Arg ACG cggtgtgggt tggagcacct0 0 72.37 52.4919.88 Both
scaffold_44 793 105916 105844 Arg ACG cctacgcgca gtctgtgcag0 0 72.37 52.4919.88 Both
scaffold_49 375 16910578 16910506 Arg CCG atcctgtggt cacgggaata0 0 65.49 49.2416.25 Both
scaffold_108 39 575284 575356 Arg CCG ctacggcagt cttgtttctt0 0 68.17 51.0717.10 Both
scaffold_108 262 485056 484984 Arg CCG gaagtacggt tctgtttctt0 0 71.25 52.7618.49 Both
scaffold_29 952 14090053 14089983 Arg CCT ccatattatg cctcaggtgg0 0 40.11 28.1611.95 Both
scaffold_23 444 33852835 33852905 Arg CCT cggcctagag tgtcatgtcc0 0 47.28 33.8813.40 Both
scaffold_21 1048 1562840 1562770 Arg CCT catttcgggg cctcatgtgc0 0 49.62 26.4523.17 Both
scaffold_5 207 17391138 17391208 Arg CCT catttatgag cttcatgtgc0 0 52.67 46.046.63 Both
scaffold_182 1 13416 13487 Arg CCT acaaccaagg ttttagtgga0 0 52.73 29.3623.37 Both
scaffold_182 21 4232 4161 Arg CCT acaaccaagg ttttagtgga0 0 52.73 29.3623.37 Both
scaffold_182 6 402957 403028 Arg CCT acaaccaagg ttttagtgga0 0 52.73 29.3623.37 Both
scaffold_1575 2 2027 2099 Arg CCT ggactgtggt ggtacttttt0 0 57.50 31.8525.65 Eufind
scaffold_68 206 9360142 9360072 Arg CCT ggccacgaag cctcaaacac0 0 57.75 43.2214.53 tRNAscan
scaffold_11 492 31612159 31612231 Arg CCT gatgtggtag cttttggaaa0 0 59.08 46.7912.29 Both
scaffold_27 941 3516381 3516311 Arg CCT acagtttggg cctcacgggc0 0 61.53 49.7711.76 Both
scaffold_83 213 3523449 3523377 Arg CCT gttgatagaa cttacgtttt0 0 67.28 54.1813.10 Both
scaffold_33 78 8495709 8495781 Arg CCT gcctaaagaa cttgcatttt0 0 67.75 54.6513.10 Both
scaffold_0 1805 110635357 110635285 Arg CCT gcttctgtga atatggtgca0 0 70.53 56.1014.43 Both
scaffold_49 131 7392364 7392436 Arg CCT tcttaaccgc gcttcctccg0 0 73.41 55.8417.57 Both
scaffold_49 594 7393038 7392966 Arg CCT tgcgccgcaa cttttttagt0 0 73.88 56.3117.57 Both
scaffold_108 84 2324370 2324442 Arg TCG gcacttggga ctcaaaaagt0 0 31.75 19.6612.09 Both
scaffold_35 278 20669323 20669392 Arg TCG ggccaataag cctcaggcac0 0 38.20 30.987.22 Both
scaffold_52 48 3617539 3617609 Arg TCG atctagcaag cctgaggcac0 0 41.66 35.476.19 Both
scaffold_5 1013 87364860 87364930 Arg TCG gggaatgggg cctcatgctc0 0 50.09 41.458.64 Both
scaffold_108 189 2690268 2690196 Arg TCG actgtgagga ctcgacagcg0 0 55.43 38.1217.31 Both
scaffold_1 190 22091819 22091889 Arg TCG ttgatatctt cctcatgtgc0 0 55.97 48.667.31 Eufind
scaffold_45 332 16182251 16182321 Arg TCG ttccccgaga ccccacgcac0 0 58.39 40.0018.39 Both
scaffold_64 40 3324283 3324355 Arg TCG taaagaaagg ctcgagagtg0 0 62.75 45.7616.99 Both
scaffold_108 119 2861451 2861523 Arg TCG ctcggtcggg tctagcgcct0 0 67.54 43.7323.81 Both
scaffold_108 197 2462699 2462627 Arg TCG tttatcaggg ttccgtagct0 0 69.08 49.2019.88 Both
scaffold_108 51 807744 807816 Arg TCG ctattcgtaa gacttctgtt0 0 69.08 49.2019.88 Both
scaffold_108 81 2294245 2294317 Arg TCG ccggcgggga ctcgaaactt0 0 69.08 49.2019.88 Both
scaffold_44 786 255101 255029 Arg TCG tgtccccgtg gtttgcattt0 0 69.55 49.6719.88 Both
scaffold_44 787 233207 233135 Arg TCG agtaagaaca ctcttaaatt0 0 69.55 49.6719.88 Both
scaffold_108 115 2774436 2774508 Arg TCG aacgctagag gtcggaagtt0 0 69.85 43.0726.78 Both
scaffold_108 117 2812641 2812713 Arg TCG actgtaagga tgcggcaact0 0 69.85 43.0726.78 Both
scaffold_49 595 7391675 7391603 Arg TCG tgtgcgtaga cggcaatgtt0 0 70.52 51.5019.02 Both
scaffold_28 858 17625412 17625340 Arg TCG tgtgtcgagc cggggtggcg0 0 76.93 58.3418.59 Both
scaffold_39 393 21543741 21543811 Arg TCT gctaccacag cctcatgcat0 0 23.07 12.2010.87 Both
scaffold_52 454 2669149 2669079 Arg TCT atgggagagg cctcatatgc0 0 27.55 14.5213.03 Both
scaffold_57 259 9764775 9764705 Arg TCT aactgtaggg ccttatacac0 0 33.88 16.2117.67 Both
scaffold_23 283 23946438 23946512 Arg TCT cagagatgag cctcatggac0 0 34.62 21.3713.25 Both
scaffold_54 182 15040333 15040403 Arg TCT ctttttgagg cctcatgtgc0 0 36.83 25.0611.77 Both
scaffold_13 117 7738614 7738683 Arg TCT gcacaagagg cctcatgggc0 0 38.20 27.0211.18 Both
scaffold_8 1400 73946642 73946572 Arg TCT aaagaagagg cctcgtgtgc0 0 38.21 32.815.40 Both
scaffold_1 625 66709671 66709741 Arg TCT atttcatgta cccactgtgc0 0 38.26 30.537.73 Both
scaffold_20 465 35375268 35375338 Arg TCT aacaaaaggg ctcatgtaca0 0 38.59 25.6712.92 Both
scaffold_6 1445 71983509 71983439 Arg TCT ctggactgag cctcttctgc0 0 39.50 17.2422.26 Both
scaffold_2 1674 82445432 82445362 Arg TCT ttaatagagg cctcatacag0 0 39.53 27.7611.77 Both
scaffold_70 461 4973776 4973706 Arg TCT ggggcggggg cctcatggcc0 0 39.85 30.809.05 Both
scaffold_7 2036 7853674 7853604 Arg TCT gggaagagag tctcatgcac0 0 40.54 31.079.47 Both
scaffold_43 535 4390722 4390652 Arg TCT aggaaatgag tctcatgcac0 0 42.27 35.776.50 Both
scaffold_46 205 15349134 15349064 Arg TCT ggcattggtg ttctcgtgag0 0 42.58 32.4510.13 Both
scaffold_2 974 90427953 90428023 Arg TCT ataatacgag cttcgtgcac0 0 42.82 29.3713.45 Both
scaffold_86 41 2759051 2759121 Arg TCT ctcagggggc cctcatctgc0 0 44.07 27.0317.04 Both
scaffold_18 912 28773386 28773316 Arg TCT ataatatgag cctcctttac0 0 44.11 28.1915.92 Both
scaffold_0 1554 127368800 127368730 Arg TCT aagattgagt ctgcagcaga0 0 44.81 31.8612.95 Both
scaffold_21 889 13387706 13387636 Arg TCT gaggtggatc cctcaggctc0 0 45.07 24.3320.74 Both
scaffold_69 7 290760 290830 Arg TCT gattttgggg cctcgcgagc0 0 45.49 31.7513.74 Both
scaffold_7 1114 93236962 93237032 Arg TCT tttaattggg cagctaccgc0 0 45.99 40.605.39 Both
scaffold_19 90 11537819 11537889 Arg TCT gtatagggtg ccttatatgc0 0 46.07 39.057.02 Both
scaffold_18 692 50180129 50180199 Arg TCT ctcactggga cctcaaatgc0 0 46.83 22.8923.94 Both
scaffold_31 762 4518387 4518317 Arg TCT tgttatgcgt cctcatgtgc0 0 47.05 38.108.95 Both
scaffold_42 44 3270295 3270365 Arg TCT cttaaatggg cctcaaacac0 0 47.29 30.3016.99 Both
scaffold_49 385 16367727 16367657 Arg TCT atctggagag cctacccatc0 0 48.45 34.1814.27 Both
scaffold_44 139 7412682 7412752 Arg TCT ccagtctaca cctcatgcac0 0 48.69 38.4210.27 Both
scaffold_70 74 3072923 3072993 Arg TCT tccataaggg ccctctgtgc0 0 49.07 39.359.72 Both
scaffold_30 176 14645840 14645910 Arg TCT gacatacggg cctcatgtgc0 0 49.19 31.9517.24 Both
scaffold_3 2166 17220231 17220161 Arg TCT tttccagggg cctcatgcac0 0 50.31 25.3924.92 Both
scaffold_88 18 1066241 1066311 Arg TCT ttttatggga cctcacgcac0 0 50.59 41.109.49 Both
scaffold_6 1141 90798356 90798426 Arg TCT agatgataaa cctcaagcac0 0 50.66 41.129.54 Both
scaffold_25 43 2814320 2814390 Arg TCT ccactagaag cctcatgtgc0 0 51.15 43.767.39 Both
scaffold_220 2 47977 48047 Arg TCT cacttacagg gctcgtgtgc0 0 51.39 42.918.48 Both
scaffold_18 110 7348939 7349009 Arg TCT tatgatgggg ccacacgtgt0 0 51.90 44.487.42 Both
scaffold_7 773 63355615 63355685 Arg TCT aggctacgag ccttatgcac0 0 52.95 37.1015.85 Both
scaffold_124 15 321747 321817 Arg TCT atgcccgggg cctgatacgc0 0 53.04 37.5115.53 Both
scaffold_10 644 51706126 51706196 Arg TCT ccaacatgag cctcatgcgc0 0 53.71 46.277.44 Both
scaffold_6 383 23790943 23791013 Arg TCT tccatccttt cctcaggcac0 0 55.12 44.9010.22 Both
scaffold_67 74 3626548 3626618 Arg TCT cacaaggtag ctcatgcaca0 0 55.39 39.5815.81 Eufind
scaffold_13 425 25607681 25607751 Arg TCT tctattgagg tctcgagtac0 0 55.40 49.995.41 Eufind
scaffold_2 398 35928798 35928868 Arg TCT ctaggtgggg ccttaagtgc0 0 55.59 45.5210.07 Eufind
scaffold_29 275 17140401 17140471 Arg TCT ttatgagaag ctcacctcct0 0 55.60 43.0212.58 Both
scaffold_4 601 41782356 41782426 Arg TCT aggagagaga cttcatgcac0 0 55.63 45.739.90 Both
scaffold_44 659 7414491 7414421 Arg TCT actaccaggg cttcatgtgc0 0 55.78 46.918.87 Eufind
scaffold_46 47 3310926 3310996 Arg TCT cctcaagggg cctcacgcac0 0 55.80 47.008.80 Eufind
scaffold_3 756 66747735 66747805 Arg TCT gaaagagggg cctcacatac0 0 55.86 42.9812.88 Eufind
scaffold_70 402 7614819 7614749 Arg TCT aactcagagg cctcacacac0 0 55.89 45.3010.59 Eufind
scaffold_7 1618 46455443 46455373 Arg TCT ctcgttcagg cctcatggag0 0 56.20 51.015.19 Both
scaffold_77 89 8417630 8417560 Arg TCT aaaagtgggg cctcaagtgc0 0 56.61 49.227.39 Eufind
scaffold_19 678 41865668 41865598 Arg TCT accgtgaggg catcatttat0 0 56.96 45.0711.89 Eufind
scaffold_0 1305 117851944 117852014 Arg TCT ttcaatggag cctgaagcat0 0 57.36 45.9511.41 Eufind
scaffold_20 926 18042684 18042614 Arg TCT tcaagatgga cctcatgtgc0 0 57.46 47.2010.26 Both
scaffold_23 904 19539762 19539692 Arg TCT gctggtgtgg actcgtgcag0 0 57.85 50.926.93 Both
scaffold_8 366 31820083 31820153 Arg TCT ggctttgggg cctcatgcgg0 0 57.89 50.877.02 Both
scaffold_69 17 665429 665499 Arg TCT ttatttaggg cctcaggcac0 0 58.29 52.226.07 Both
scaffold_96 48 4162169 4162099 Arg TCT tccagtagga cctcgtgtgc0 0 58.32 49.139.19 Eufind
scaffold_88 187 5810010 5809940 Arg TCT aggacagggg tctcacgtgt0 0 58.81 52.945.87 Eufind
scaffold_43 333 16663083 16663013 Arg TCT aattacaagg ccttgtgcac0 0 58.90 49.669.24 Both
scaffold_115 52 1437328 1437258 Arg TCT gcatttgaga cctcatgcac0 0 59.48 44.8814.60 Both
scaffold_12 260 22004399 22004469 Arg TCT aaacaatggg cctcatgtgc0 0 59.73 49.4410.29 Both
scaffold_20 184 12870912 12870982 Arg TCT gtatacggtg tctcctgcac0 0 59.95 45.0914.86 Eufind
scaffold_20 713 35428781 35428711 Arg TCT ggtttggggg tctcacgcac0 0 60.02 43.3716.65 Both
scaffold_55 103 4189399 4189469 Arg TCT tgaagagggg cctcatgtga0 0 60.42 49.6010.82 Eufind
scaffold_4 2216 18264790 18264720 Arg TCT gactgatgag cctcatacac0 0 61.78 49.8811.90 Both
scaffold_28 1015 8650593 8650523 Arg TCT cacatggggg cctgaagtac0 0 61.97 43.9118.06 Eufind
scaffold_182 4 224984 225055 Arg TCT acaaccaagg ttttagtgga0 0 62.03 40.2421.79 Eufind
scaffold_6 861 65503131 65503201 Arg TCT ttctccaaga cctgaagtgc0 0 62.15 51.3610.79 Eufind
scaffold_23 820 24047167 24047097 Arg TCT ctgaatggag cttcgtgcgc0 0 62.24 43.9418.30 Both
scaffold_14 187 16888062 16888131 Arg TCT tataaagggg cctcaagcac0 0 64.03 42.7721.26 Eufind
scaffold_5 259 20715710 20715780 Arg TCT catgactagg cctcacatgc0 0 64.06 52.4911.57 Both
scaffold_67 407 3451626 3451556 Arg TCT tagtaagggg cctcatgcac0 0 64.50 53.5610.94 Both
scaffold_6 1348 83067954 83067884 Arg TCT gtatcctgag cttcatgtac0 0 64.81 58.975.84 Eufind
scaffold_22 759 32275183 32275113 Arg TCT cctcctatgg cctcacgagc0 0 64.92 46.5718.35 Eufind
scaffold_18 464 28338998 28339068 Arg TCT agtcaggagg tctcaagcgc0 0 65.37 45.8419.53 Both
scaffold_28 140 7321072 7321142 Arg TCT tgtgtggggg cctcaagcac0 0 65.76 52.9912.77 Both
scaffold_10 646 51924599 51924669 Arg TCT ggactggaag tctcgtgcac0 0 66.17 53.6712.50 Eufind
scaffold_2 2246 24743792 24743722 Arg TCT atggggacat ccttataggc0 0 67.44 51.1716.27 Both
scaffold_9 618 52672162 52672232 Arg TCT cagaatagag cctcataccc0 0 69.00 57.9311.07 Both
scaffold_33 506 8411059 8410986 Arg TCT gtgtggtgag gtcacccggc0 0 76.29 56.9719.32 Both
scaffold_71 157 10580625 10580540 Arg TCT actaacatct ccttttgttt10580588 10580576 68.58 48.1320.45 Both
scaffold_47 152 12166097 12166184 Arg TCT ctcgctaggt gttttatttt12166134 12166148 71.56 51.1120.45 Both
scaffold_0 1434 124762165 124762282 Arg TCT tcaatatgag cctcctatac124762201 124762247 50.08 34.2615.82 Both
scaffold_108 88 2401504 2401593 Arg TCT tttccaccta ttacttcttt2401541 2401557 70.31 51.2319.08 Both
scaffold_108 170 2917270 2917180 Arg TCT ctgtcgccta ctacttttct2917233 2917216 69.80 50.7219.08 Both
scaffold_6 460 29757634 29757724 Arg TCT ctcggcagcc agttttgacg29757671 29757688 66.17 45.7220.45 Both
scaffold_18 598 42257236 42257327 Arg TCT aactatagag cctcatgtgc42257272 42257292 35.90 23.8412.06 Both
scaffold_1 1700 77404010 77403915 Arg TCT actaatggtg ctggtaatca77403974 77403950 57.71 50.976.74 Eufind
scaffold_60 309 7956136 7956052 Arg TCT tccaacaggt cagtgctttt7956099 7956088 71.18 52.8818.30 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
scaffold_0 1073 96095218 96095291 Asn ATT gccagccatt gatgttttgg0 0 33.16 20.4412.72 Both
scaffold_45 207 10782206 10782279 Asn ATT attcaggtgt ctatgtttgg0 0 44.37 36.348.03 Both
scaffold_7 1386 67345838 67345767 Asn ATT caccagggtt gctgaggcca0 0 44.65 21.1623.49 Both
scaffold_3 1646 64234711 64234638 Asn ATT ctgtgcctga gtacactttt0 0 64.53 45.7818.75 Both
scaffold_101 55 3083853 3083932 Asn GTT tgcagaggag aaagatgtgg0 0 23.55 14.928.63 Both
scaffold_80 68 7166457 7166535 Asn GTT aaaagaagag gaaagatgtg0 0 31.49 16.7614.73 Both
scaffold_6 173 9866115 9866184 Asn GTT atttgatggt tcttggaaac0 0 32.56 25.187.38 Both
scaffold_17 191 19838704 19838777 Asn GTT ttatatacac catctcaggt0 0 48.26 27.7920.47 Both
scaffold_127 39 2155933 2156006 Asn GTT agggccctgt atacgcttta0 0 48.41 33.9414.47 Both
scaffold_60 225 13896791 13896718 Asn GTT ggccccctgg ctgtgcttta0 0 48.66 35.9812.68 Both
scaffold_5 1345 85000988 85000915 Asn GTT ataagtggtg gaaatcagtt0 0 55.91 37.4018.51 tRNAscan
scaffold_308 10 5338 5266 Asn GTT agggctctgt ttatgcttta0 0 56.56 36.2320.33 Both
scaffold_60 237 13477226 13477153 Asn GTT agggctctgt ctatgcttta0 0 57.93 43.7514.18 Both
scaffold_265 5 75066 75139 Asn GTT ttagtctgtg cgccttaaaa0 0 58.17 43.1415.03 Both
scaffold_265 11 214615 214687 Asn GTT agggctctgt ttatgcttta0 0 61.82 41.4920.33 Both
scaffold_49 62 3791432 3791505 Asn GTT agggactgag tttcgatttt0 0 62.02 39.6422.38 Both
scaffold_209 16 394653 394725 Asn GTT agggctctgt ttatgcttta0 0 62.60 36.9725.63 Both
scaffold_245 1 5160 5233 Asn GTT agggctccgt ctacgcttta0 0 63.28 45.4217.86 Both
scaffold_265 21 52140 52068 Asn GTT agggctctgt ttatgcttta0 0 63.47 43.1420.33 Both
scaffold_308 3 26559 26632 Asn GTT tttatctgtg tgccttaaat0 0 65.03 55.0010.03 Both
scaffold_209 7 122013 122086 Asn GTT gttacctgtg gtccccaggt0 0 65.71 56.009.71 Eufind
scaffold_60 241 13421501 13421428 Asn GTT agggctctgt atatgcttta0 0 66.80 50.5816.22 Eufind
scaffold_530 3 36320 36248 Asn GTT agggctctgt ttatgcttta0 0 67.79 42.1625.63 Both
scaffold_36 9 893745 893818 Asn GTT acccccaggt gtatgcttta0 0 68.85 47.8820.97 Both
scaffold_33 473 10654589 10654516 Asn GTT gtatgtgcct gaagtggtca0 0 69.31 47.0322.28 Both
scaffold_209 21 448177 448104 Asn GTT gttacctgcg gtccccaggt0 0 72.50 55.7316.77 Both
scaffold_60 196 13768790 13768863 Asn GTT gttacctgtg cgcctcagct0 0 72.94 59.6313.31 Eufind
scaffold_60 213 14110082 14110155 Asn GTT agggctctgt ctatgctttg0 0 73.31 55.9517.36 Both
scaffold_11 1227 42875513 42875440 Asn GTT gcgttctcag tgtgtctcac0 0 75.69 52.4223.27 Both
scaffold_11 636 42827018 42827091 Asn GTT gcgttctcag tgtgtctcac0 0 75.69 52.4223.27 Both
scaffold_60 207 13984632 13984705 Asn GTT tttacccgtg ttccttaggt0 0 77.29 54.0323.26 Both
scaffold_541 1 6043 6116 Asn GTT gttacctgtg ttccttaggt0 0 78.33 60.2018.13 Both
scaffold_127 31 1859225 1859298 Asn GTT aattctgcgc atggtacgat0 0 78.62 57.6021.02 Both
scaffold_127 25 1775210 1775283 Asn GTT gtttcccgta caactcagat0 0 79.05 54.7124.34 Both
scaffold_127 64 1828269 1828196 Asn GTT agattctcgt acggtatgct0 0 79.32 56.0523.27 Both
scaffold_245 5 111079 111152 Asn GTT tttacccgtg cactttgggt0 0 79.46 57.5221.94 Both
scaffold_11 1230 42779227 42779154 Asn GTT cgtccagttt agattgcaag0 0 79.79 56.5223.27 Both
scaffold_60 229 13834557 13834484 Asn GTT agagctccgt ctatgcttta0 0 80.15 56.8923.26 Both
scaffold_60 232 13712126 13712053 Asn GTT gttacctgtg gttcctaggt0 0 80.15 56.8923.26 Both
scaffold_127 35 1954359 1954432 Asn GTT tagtcactgt acgataagct0 0 80.35 57.0923.26 Both
scaffold_11 628 42499886 42499959 Asn GTT gtgcatagct tgactctcag0 0 82.24 58.9723.27 Both
scaffold_127 74 1664113 1664040 Asn GTT agatgcctgt aaagttttta0 0 82.24 58.9723.27 Both
scaffold_15 306 21655274 21655347 Asn GTT ttacatcagc cgcagcgttt0 0 82.24 58.9723.27 Both
scaffold_153 13 1085933 1086006 Asn GTT cgatagcgct agccgtggtt0 0 82.24 58.9723.27 Both
scaffold_29 836 17054886 17054813 Asn GTT gggcagctgg gcagcagtcc0 0 82.24 58.9723.27 Both
scaffold_31 514 21136384 21136311 Asn GTT aactaccgcg cttcggtttt0 0 82.24 58.9723.27 Both
scaffold_33 120 11036941 11037014 Asn GTT ttccgagcca ggagtggtcg0 0 82.24 58.9723.27 Both
scaffold_422 4 37104 37031 Asn GTT attacctgcg gtccccaggt0 0 82.24 58.9723.27 Both
scaffold_44 1 48581 48654 Asn GTT taaagcagct gctattttgg0 0 82.24 58.9723.27 Both
scaffold_60 14 344101 344174 Asn GTT aattcgctgt atatgtttac0 0 82.24 58.9723.27 Both
scaffold_60 239 13437642 13437569 Asn GTT gttacctgtg gtcctcaggt0 0 82.24 58.9723.27 Both
scaffold_60 424 93908 93835 Asn GTT gttccttgtg caactgtgat0 0 82.24 58.9723.27 Both
scaffold_127 36 1989971 1990044 Asn GTT aggcctgtgc gtatgcttta0 0 82.89 59.6223.27 Both
scaffold_60 419 272852 272779 Asn GTT aattcgctgt gtatgtgtac0 0 82.89 59.6223.27 Both
scaffold_209 14 378399 378472 Asn GTT gtcacctgtg gtccccaggt0 0 82.97 58.0024.97 Both
 
scaffold_1 937 91723877 91723947 Asp GTC ttgtgatgca cctcatgcac0 0 41.16 27.4613.70 Both
scaffold_36 255 15225105 15225176 Asp GTC tcttgcattg gcagactccc0 0 43.62 37.046.58 Both
scaffold_3 1158 102408800 102408871 Asp GTC tggtttactg gcagacacct0 0 51.16 34.2516.91 Both
scaffold_0 1517 129196113 129196042 Asp GTC gtctgaaagg gttgatattt0 0 51.43 35.5615.87 Both
scaffold_20 234 17499474 17499544 Asp GTC aaacatgggg tctcaagcag0 0 55.06 47.347.72 Both
scaffold_8 22 3241473 3241544 Asp GTC agccagaagg gttgctgttt0 0 55.49 39.7815.71 Both
scaffold_43 34 2552006 2552077 Asp GTC taaaagttgg gcagacgccc0 0 57.30 33.6023.70 Both
scaffold_48 232 14744237 14744167 Asp GTC gacagctgga gatttttttt0 0 60.15 49.2310.92 Both
scaffold_84 29 1856768 1856839 Asp GTC acgtggcacg accgcgggat0 0 65.02 40.4824.54 Both
scaffold_17 1053 16124375 16124305 Asp GTC cctctaagag cccgtgtaca0 0 66.87 50.3516.52 Both
scaffold_108 123 2899095 2899166 Asp GTC ttttccgtct gctaaggtat0 0 70.36 45.8224.54 Both
scaffold_108 55 887877 887948 Asp GTC gtaagcccac agtactggat0 0 71.60 47.0624.54 Both
scaffold_2 977 90518788 90518859 Asp GTC ttcgtgcgac gcaccggtag0 0 71.60 47.0624.54 Both
scaffold_108 164 2998690 2998619 Asp GTC cctcgtcact gatattgagg0 0 72.92 48.3824.54 Both
scaffold_108 203 2418442 2418371 Asp GTC tgcaatacct gccaatatga0 0 72.92 48.3824.54 Both
scaffold_33 115 10978301 10978372 Asp GTC gccaccgccg gcagacgccc0 0 72.92 48.3824.54 Both
scaffold_33 119 11023065 11023136 Asp GTC cttaccgctg gtagtggttg0 0 72.92 48.3824.54 Both
scaffold_47 399 12272483 12272412 Asp GTC gcaagctact agtgagcgac0 0 72.92 48.3824.54 Both
scaffold_84 27 1854198 1854269 Asp GTC ggtacggtag gccagtgcac0 0 72.92 48.3824.54 Both
scaffold_2 1021 93553118 93553189 Asp GTC ttatgacaga gttgttattt0 0 74.76 50.2124.55 Both
 
scaffold_91 6 522859 522930 Cys ACA actcacaggt gtgttacttc0 0 64.20 49.6314.57 Both
scaffold_26 842 12744216 12744146 Cys GCA agtacaagag cctcgtgtac0 0 47.74 35.9511.79 Both
scaffold_14 762 37660753 37660682 Cys GCA ccatatatat catctatatt0 0 55.70 47.937.77 Both
scaffold_34 609 8039733 8039662 Cys GCA actggcatgt ctgtcatttc0 0 56.96 50.046.92 Eufind
scaffold_11 1636 8424750 8424679 Cys GCA taacagccgt ttctggtact0 0 59.95 46.7313.22 Both
scaffold_5 573 41935459 41935530 Cys GCA ttggagatgt tgtatttttg0 0 61.16 53.417.75 Eufind
scaffold_91 133 372887 372816 Cys GCA tggcatgcca tatttacatg0 0 64.73 44.3720.36 Both
scaffold_34 611 8020179 8020108 Cys GCA tagcatacca agatttttag0 0 65.84 49.7616.08 Both
scaffold_34 608 8067702 8067631 Cys GCA tcacatcaca gtcaaatcac0 0 66.77 50.6016.17 Both
scaffold_91 131 538835 538764 Cys GCA aggcatgtct cgctacactc0 0 68.56 51.0717.49 Both
scaffold_34 606 8073710 8073639 Cys GCA ctgaaccaaa ttgagggttt0 0 69.18 50.9918.19 Both
scaffold_34 605 8077677 8077606 Cys GCA atgggcgtgt gtgtcatatc0 0 69.73 50.5519.18 Both
scaffold_34 607 8071968 8071897 Cys GCA tagcatacca agctttttag0 0 71.19 49.1622.03 Both
scaffold_34 615 7992549 7992478 Cys GCA tagcatacca agctttttag0 0 71.19 49.1622.03 Both
scaffold_91 132 374519 374448 Cys GCA taaaaggaaa gccatgttgg0 0 71.22 53.0218.20 Both
scaffold_103 64 3477773 3477702 Cys GCA ttattgtcat gtttgctctt0 0 73.27 55.0918.18 Both
scaffold_31 513 21198189 21198118 Cys GCA agaaggacct tccgagtacc0 0 73.73 55.8117.92 Both
scaffold_103 62 3481403 3481332 Cys GCA tattgcatca aagcactcct0 0 74.20 55.0219.18 Both
scaffold_91 134 345869 345798 Cys GCA gcctgtgtca gctttccttg0 0 74.20 55.0219.18 Both
scaffold_31 512 21214256 21214185 Cys GCA ttccagcaga aaagcttcaa0 0 74.26 55.0219.24 Both
scaffold_34 604 8086130 8086059 Cys GCA tcacatcaca gccaagtcac0 0 74.26 55.0219.24 Both
scaffold_93 76 2380427 2380356 Cys GCA ctttggtcct tcctagggag0 0 74.32 57.4816.84 Both
scaffold_34 610 8021937 8021866 Cys GCA atgaactaaa ttgaaggtct0 0 74.40 56.4417.96 Both
scaffold_34 613 8000968 8000897 Cys GCA accagcaggt gtatcatatc0 0 76.00 56.8219.18 Both
scaffold_31 511 21217808 21217737 Cys GCA ggaacggcgc ctaaggtttt0 0 77.18 59.2617.92 Both
scaffold_103 65 3476696 3476625 Cys GCA taccagcaat gtattactct0 0 77.65 58.4819.17 Both
scaffold_31 309 21215902 21215973 Cys GCA tgccaaaagt cttctcagtt0 0 77.71 58.4719.24 Both
scaffold_31 506 21404491 21404420 Cys GCA agcaggcggc acatgtcgtt0 0 77.71 58.4719.24 Both
scaffold_31 507 21403657 21403586 Cys GCA caccggcaga gactgtgctt0 0 77.71 58.4719.24 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
scaffold_4 988 76255198 76255269 Gln CTG atacacatgg gtcgttcagt0 0 37.75 32.015.74 Both
scaffold_60 209 14020559 14020630 Gln CTG gacttgtggt tagtgtttcc0 0 44.51 26.9517.56 Both
scaffold_5 388 28908538 28908609 Gln CTG actcatgctt ttccctttcg0 0 45.56 29.1816.38 Both
scaffold_60 216 14197880 14197809 Gln CTG gagttgttgt tagtgtttcc0 0 47.44 29.7317.71 Both
scaffold_4 1403 83047034 83046963 Gln CTG ttaaaatttg ttcttatttt0 0 49.36 29.8019.56 Both
scaffold_209 27 335594 335523 Gln CTG aaaggcttgt tagcgtttcc0 0 52.26 34.4017.86 Both
scaffold_2310 1 4079 4008 Gln CTG gagttgtggt tagtgtttcc0 0 53.52 35.8917.63 Both
scaffold_541 3 32512 32583 Gln CTG gagttgcggt tagtgtttcc0 0 53.52 35.8917.63 Both
scaffold_51 420 3594712 3594641 Gln CTG aatctgagat tagtgtttcc0 0 56.22 37.1119.11 Both
scaffold_308 6 98418 98347 Gln CTG gccttgtggt tagtgtttcc0 0 58.18 41.6716.51 Both
scaffold_49 7 496788 496859 Gln CTG tgctgcagcc gtctggccct0 0 59.66 45.4114.25 Both
scaffold_28 575 34187563 34187634 Gln CTG taataaggca taggttttta0 0 61.69 38.7522.94 Both
scaffold_17 1213 177731 177660 Gln CTG gattcatggt tagtatttac0 0 64.80 41.5123.29 Both
scaffold_127 73 1683578 1683507 Gln CTG ctctccaggt agatgtttaa0 0 66.89 45.3021.59 Both
scaffold_108 159 3271432 3271361 Gln CTG tttcttgtcg cgagctttta0 0 67.02 51.0216.00 Both
scaffold_127 94 60628 60557 Gln CTG aggtgcggtt tttcccgtct0 0 67.69 46.1021.59 Both
scaffold_245 7 160206 160277 Gln CTG agcctgtggt tagtgtttcc0 0 68.38 43.7224.66 Both
scaffold_209 20 479437 479508 Gln CTG aaaggcttgt tagtgtttcc0 0 68.42 45.1323.29 Both
scaffold_245 16 105777 105706 Gln CTG gacttgtggt tagtgtttcc0 0 68.42 45.1323.29 Both
scaffold_108 71 2094419 2094490 Gln CTG acgagaggtt taggaagcca0 0 68.68 52.6716.01 Both
scaffold_209 9 234811 234882 Gln CTG aaaggcttgt tagtgtttcc0 0 70.31 47.0223.29 Both
scaffold_127 30 1835050 1835121 Gln CTG cttccaaggt tattgtttaa0 0 70.35 48.7721.58 Both
scaffold_108 205 2395679 2395608 Gln CTG ccataagcag ctgtcacttc0 0 71.26 49.6721.59 Both
scaffold_108 126 2930432 2930503 Gln CTG gcataagcgg gtgtcatttc0 0 72.00 48.7023.30 Both
scaffold_108 167 2962484 2962413 Gln CTG ccagctgtgg ggcttagttt0 0 73.65 50.3623.29 Both
scaffold_135 47 578096 578025 Gln CTG tgtcaacgtg tcctgtaatt0 0 73.65 50.3623.29 Both
scaffold_47 151 12165092 12165163 Gln CTG ctaggcggca taactttttg0 0 73.65 50.3623.29 Both
scaffold_59 258 11625229 11625158 Gln CTG taagtgtggc gcagcggtta0 0 73.65 50.3623.29 Both
scaffold_19 933 21762518 21762447 Gln TTG catgtcgcgc cgcctgcagc0 0 53.31 41.5111.80 Both
scaffold_6 450 28398342 28398413 Gln TTG cttgggtggt tacaagtttg0 0 54.78 44.4510.33 Both
scaffold_265 13 182477 182406 Gln TTG ccccgttagg agctgtggtc0 0 54.90 38.6216.28 Both
scaffold_1 1049 97579830 97579902 Gln TTG agtggaagga gttattctca0 0 56.79 39.1117.68 Both
scaffold_23 589 38560186 38560116 Gln TTG cctgttgggg gcccatgcgc0 0 57.52 38.6618.86 Both
scaffold_108 72 2101492 2101563 Gln TTG cccgtgtggt tacaagtttg0 0 63.09 47.0916.00 Both
scaffold_705 1 10535 10464 Gln TTG aaagacttgt tagtgtttcc0 0 63.76 43.4620.30 Both
scaffold_429 3 32406 32477 Gln TTG aaagacttgt ttgtgtttct0 0 68.12 44.8323.29 Both
scaffold_108 70 2083703 2083774 Gln TTG tccgtgtggt ggtaagtttt0 0 68.31 52.3116.00 Both
scaffold_44 10 243270 243341 Gln TTG tacgtatcaa ggttcgattt0 0 68.31 52.3116.00 Both
scaffold_44 9 242694 242765 Gln TTG gacctttgtc gcttacgttt0 0 68.31 52.3116.00 Both
scaffold_308 5 59260 59331 Gln TTG aaagacttgt tagtgtttcc0 0 69.89 48.3121.58 Both
scaffold_31 534 19186267 19186196 Gln TTG acagtcaggc cgctacttct0 0 73.77 50.8322.94 Both
scaffold_49 453 13840315 13840244 Gln TTG tctatcagca cactagacct0 0 73.77 50.8322.94 Both
 
scaffold_8 221 19167223 19167293 Glu CTC ctctactgag tctcatgtgc0 0 37.38 24.1113.27 Both
scaffold_0 2750 21855424 21855355 Glu CTC aaggtatgag cctcatttgc0 0 39.53 21.9717.56 Both
scaffold_11 905 63927698 63927769 Glu CTC aaatagatac gcctttcttc0 0 41.12 27.6113.51 Both
scaffold_48 132 11194862 11194931 Glu CTC ttaagtggga ccttatgtag0 0 43.37 31.1912.18 Both
scaffold_71 215 6002696 6002625 Glu CTC tccctcatga gccattcttc0 0 45.20 32.3712.83 Both
scaffold_84 68 4892535 4892605 Glu CTC tacagcaggg cctcaagtcc0 0 49.17 35.8413.33 Both
scaffold_67 296 8828467 8828397 Glu CTC aggaagcaga tctcatgtgc0 0 52.76 35.5717.19 Both
scaffold_59 20 3208841 3208911 Glu CTC attccagaag cctcatgcac0 0 54.26 39.7514.51 Both
scaffold_15 802 51125228 51125158 Glu CTC agtgaggcac cctcatgcac0 0 55.31 45.0710.24 Eufind
scaffold_0 793 66621954 66622025 Glu CTC tgtaaggcct agtgtttgat0 0 55.90 47.838.07 Eufind
scaffold_10 1583 5123687 5123617 Glu CTC ctggatgagg cctcttgcac0 0 57.15 45.7611.39 Both
scaffold_12 175 11848128 11848198 Glu CTC tactggggag cctcatgctt0 0 64.31 48.3815.93 Both
scaffold_29 527 33078219 33078290 Glu CTC atcttgacac gactttcata0 0 65.19 42.0723.12 Both
scaffold_23 203 20233231 20233302 Glu CTC tgcacaacgc gctgttcttt0 0 65.45 45.5119.94 Both
scaffold_35 192 13580915 13580985 Glu CTC gtagcacgag cctcacgtac0 0 65.64 44.8020.84 Both
scaffold_11 1237 42521845 42521774 Glu CTC gcataccagt gggagcttct0 0 70.81 48.1422.67 Both
scaffold_11 1232 42743560 42743489 Glu CTC ctacagcggt agtcgttttg0 0 72.69 50.0222.67 Both
scaffold_11 630 42532932 42533003 Glu CTC atttacggct attcgttttg0 0 72.69 50.0222.67 Both
scaffold_0 480 35881889 35881960 Glu CTC ttaagcacct ttacgcattt0 0 76.61 53.9422.67 Both
scaffold_1 1232 108541005 108540934 Glu CTC cctcgtgtgt atgctatttt0 0 76.61 53.9422.67 Both
scaffold_127 21 1647064 1647135 Glu CTC tttcccagcg ggtacgtttt0 0 76.61 53.9422.67 Both
scaffold_135 29 609436 609507 Glu CTC tactcaagct aagtgtctct0 0 76.61 53.9422.67 Both
scaffold_33 114 10972558 10972629 Glu CTC gtcccgacgc gccgttcttc0 0 76.61 53.9422.67 Both
scaffold_33 117 10979503 10979574 Glu CTC gtcccgacgc gccgttcttc0 0 76.61 53.9422.67 Both
scaffold_87 19 2362009 2362078 Glu TTC ggggaggcgg cctcacatac0 0 22.79 16.336.46 Both
scaffold_91 31 2560254 2560337 Glu TTC ttagcatggg cctcacccac0 0 27.50 18.518.99 Both
scaffold_98 34 3764368 3764438 Glu TTC attaaaggca tcttaagcac0 0 30.03 19.8310.20 Both
scaffold_17 2 72020 72091 Glu TTC acagcgcagt gtattttgtc0 0 32.66 26.985.68 Both
scaffold_2 1640 84887476 84887406 Glu TTC tatcctcatg cactaccagt0 0 33.00 25.687.32 Both
scaffold_5 492 34400700 34400769 Glu TTC ttctgtgggg cctcacgcac0 0 36.63 31.395.24 Both
scaffold_2 353 32129812 32129882 Glu TTC tttcttgggg cctaatgtgt0 0 37.37 32.045.33 Both
scaffold_0 1277 116226011 116226081 Glu TTC cctggtgagg cctcaagggc0 0 37.81 31.526.29 Both
scaffold_2 1860 60658035 60657964 Glu TTC gaagctgtct ctcttccctg0 0 38.87 26.6712.20 Both
scaffold_27 439 28343254 28343324 Glu TTC agagaagata cctcaagggc0 0 39.96 34.935.03 Both
scaffold_0 1948 95429772 95429702 Glu TTC tagtaagggg cctcatgcgt0 0 40.30 31.398.91 Both
scaffold_20 699 36240368 36240298 Glu TTC cattatgggt cctcaagcgc0 0 40.39 25.1115.28 Both
scaffold_170 16 240784 240854 Glu TTC tatatatatg cttcactggc0 0 41.15 30.7010.45 Both
scaffold_19 1159 5179511 5179442 Glu TTC ggaagataag cagagttacc0 0 41.92 21.4620.46 Both
scaffold_1 1187 105729006 105729076 Glu TTC tatttagagg tttgatgtgc0 0 42.07 32.789.29 Both
scaffold_422 3 47504 47575 Glu TTC ttcaggtaag agctgttttg0 0 42.16 28.8913.27 Both
scaffold_127 40 2194931 2195002 Glu TTC gttgtacatc ttcttttgcg0 0 42.23 32.949.29 Both
scaffold_28 625 31485878 31485808 Glu TTC aaatcacagg ctttatgcgc0 0 42.56 32.709.86 Both
scaffold_2 1921 56116263 56116194 Glu TTC tttgttagaa cctcaggcac0 0 42.95 37.625.33 Both
scaffold_27 426 27422990 27423060 Glu TTC agggtgtagg cctcaagagc0 0 43.63 27.3016.33 Both
scaffold_67 106 5012496 5012566 Glu TTC atgtatgagg cctcatgtgc0 0 43.70 34.389.32 Both
scaffold_42 371 1390067 1389997 Glu TTC aaataagagg cctcaagtac0 0 43.95 36.287.67 Both
scaffold_67 266 10173100 10173030 Glu TTC tggggacgag cctcatgtgc0 0 44.00 31.6612.34 Both
scaffold_7 1443 62261954 62261884 Glu TTC tagcatgggg cctcatgcac0 0 44.38 39.275.11 Both
scaffold_0 2345 57253232 57253162 Glu TTC cttcaagagg cctcatgcat0 0 45.14 35.319.83 Both
scaffold_112 13 920329 920399 Glu TTC gtgttaggta cctcatgcca0 0 45.15 19.5025.65 Both
scaffold_2 1883 58620949 58620879 Glu TTC cagacaaaga cttcatgtgt0 0 45.81 26.5219.29 Both
scaffold_1 1888 64502664 64502594 Glu TTC aacaaaaggg actaccacac0 0 45.96 35.4210.54 Both
scaffold_245 6 116697 116768 Glu TTC ccccagcagg agctgctttg0 0 46.20 35.5010.70 Both
scaffold_54 340 4135916 4135846 Glu TTC gaaatggagg cattgtgtgc0 0 46.31 25.5220.79 Both
scaffold_13 1256 24155098 24155028 Glu TTC gtatgttggg cctttatgtg0 0 46.58 27.5619.02 Both
scaffold_1 365 39864534 39864604 Glu TTC ccagcatgat ccttaagcac0 0 46.75 28.2318.52 Both
scaffold_1 1107 99917912 99917982 Glu TTC gcaaaatggg ccttatatcc0 0 47.09 32.1614.93 Both
scaffold_18 120 7605784 7605854 Glu TTC gggggagggg cctcaggtgc0 0 47.25 35.6211.63 Both
scaffold_28 709 25199605 25199535 Glu TTC taagtggagg ccttaagcac0 0 47.47 32.4015.07 Both
scaffold_8 1092 79724598 79724668 Glu TTC aacgggaggg cctcatgggc0 0 47.88 28.1219.76 Both
scaffold_9 1461 57051868 57051798 Glu TTC ttggagtaag cctcatgcac0 0 48.67 36.4812.19 Both
scaffold_11 152 4983167 4983237 Glu TTC gtagagcagg actcatacgc0 0 48.75 33.3015.45 Both
scaffold_38 449 2608580 2608510 Glu TTC gagttggagg tctcatgcat0 0 48.80 25.6123.19 Both
scaffold_10 655 52354783 52354853 Glu TTC ctttttgggg cctcaagtgt0 0 48.87 38.0710.80 Both
scaffold_119 6 327767 327837 Glu TTC tcgcttgaag ctttatgcat0 0 48.92 36.8612.06 Both
scaffold_60 425 88777 88706 Glu TTC tcgcagcagt aggtgttttg0 0 48.94 31.4317.51 Both
scaffold_44 584 11024594 11024524 Glu TTC ggaaaagaag tctcaagtgt0 0 49.56 40.429.14 Both
scaffold_67 308 8266164 8266094 Glu TTC aattgggaag cctcgtgtgc0 0 49.89 39.7110.18 Both
scaffold_2 1106 98926573 98926644 Glu TTC taaaatgggg cctcatatgc0 0 49.90 35.9813.92 Both
scaffold_20 460 34720957 34721027 Glu TTC attgtggagg cctcttgtgg0 0 50.88 43.627.26 Both
scaffold_28 32 1087583 1087653 Glu TTC aatttgtgag actcacacac0 0 51.26 43.218.05 Both
scaffold_4 547 38415569 38415639 Glu TTC atagccaggg cttcatgtgc0 0 51.74 41.2410.50 Both
scaffold_51 186 13290042 13290112 Glu TTC cttgggtagg tacccatcgc0 0 51.87 33.6218.25 Both
scaffold_26 423 25206116 25206186 Glu TTC tggtttgggg cttcatgcat0 0 53.00 36.2516.75 Both
scaffold_100 56 3534239 3534308 Glu TTC tagtccaggg cacaccatat0 0 54.26 35.6718.59 Both
scaffold_1 1442 94941291 94941221 Glu TTC aagagatgag cctcctaccc0 0 54.50 40.8813.62 Both
scaffold_47 461 8301518 8301448 Glu TTC tcttataggg cctcaagtgc0 0 54.51 44.969.55 Both
scaffold_81 38 4603152 4603222 Glu TTC tgttaatgag cctcatgtgc0 0 54.56 45.798.77 Both
scaffold_15 595 44817756 44817826 Glu TTC gaagaaggga cctcacgcac0 0 54.82 39.2715.55 Both
scaffold_12 440 35060099 35060169 Glu TTC cctgttaagg cctcacattc0 0 54.90 45.549.36 Both
scaffold_6 289 16874063 16874132 Glu TTC acagatgagg cctcatgcat0 0 55.16 39.6115.55 Both
scaffold_10 1494 13348010 13347940 Glu TTC gggcctgaat cctcatgcac0 0 55.18 46.648.54 Both
scaffold_0 1629 123031788 123031718 Glu TTC taatatgggg cctcatgtac0 0 55.23 45.2310.00 Eufind
scaffold_5 318 24354450 24354520 Glu TTC gattatgggg ccttatgtga0 0 55.29 39.0116.28 Eufind
scaffold_39 157 9767906 9767976 Glu TTC catgaatgag tctcatgcac0 0 55.47 47.647.83 Eufind
scaffold_2 1292 107171924 107171854 Glu TTC atacaaaaag cctcatgtac0 0 55.56 47.208.36 Eufind
scaffold_22 226 20497294 20497364 Glu TTC ttccatgggg tctcatatgc0 0 55.58 43.8411.74 Eufind
scaffold_29 894 15773626 15773556 Glu TTC aaggtggggg cctcatatgc0 0 55.73 47.348.39 Both
scaffold_140 3 543100 543169 Glu TTC tatgtatgag cctcctgcac0 0 55.90 42.6313.27 Eufind
scaffold_43 555 3500718 3500648 Glu TTC tatccaggag cttcaggcat0 0 55.92 41.4114.51 Both
scaffold_12 508 38775009 38775079 Glu TTC tacttacggg cctcatgccc0 0 55.98 46.679.31 Both
scaffold_530 2 47304 47233 Glu TTC ctttggcagg tgctgttttg0 0 56.20 38.9317.27 Eufind
scaffold_14 780 35446420 35446351 Glu TTC acatagagag cctctagggc0 0 56.67 40.6516.02 Eufind
scaffold_29 993 12357064 12356994 Glu TTC tacttgtaag tctcacgtac0 0 56.75 31.7125.04 Both
scaffold_5 2064 23937196 23937126 Glu TTC attttagggt cctcatgtgc0 0 56.75 37.1219.63 Eufind
scaffold_18 1007 24437973 24437903 Glu TTC taaggagggg tctcatgggt0 0 56.82 37.1719.65 Eufind
scaffold_45 512 10689399 10689329 Glu TTC ctctgagggg cctcatgtat0 0 56.83 40.0716.76 Both
scaffold_60 240 13432430 13432359 Glu TTC ccctgacagg aactgttttg0 0 57.81 43.4414.37 Both
scaffold_39 353 20223252 20223322 Glu TTC tttagtgagg cctcatgcga0 0 58.14 44.7813.36 Both
scaffold_9 600 51884532 51884602 Glu TTC caaggtgatg cctcatgtgt0 0 58.38 52.006.38 Eufind
scaffold_43 199 12920739 12920809 Glu TTC cttctagggg cctcgtgcgc0 0 58.49 39.1319.36 Both
scaffold_70 367 8791105 8791035 Glu TTC aaaatcgagg catcaagtgc0 0 58.78 40.2518.53 Eufind
scaffold_15 381 28096020 28096090 Glu TTC ataataaggg cctcgtaaat0 0 58.80 43.7915.01 Both
scaffold_33 155 13674284 13674354 Glu TTC agacttgggg cctcatgtgc0 0 58.82 44.8313.99 Both
scaffold_5 389 28926447 28926517 Glu TTC ccatttagcg ccttatacat0 0 59.34 37.6321.71 Both
scaffold_7 1490 57885801 57885731 Glu TTC aaaagggggt cctcatgtgc0 0 59.43 47.2912.14 Eufind
scaffold_70 36 1866943 1867014 Glu TTC gggtgtaaga cctcacgagg0 0 60.09 42.1817.91 Eufind
scaffold_56 173 13694498 13694568 Glu TTC taaattgggg cctcgtgtgc0 0 60.13 48.6911.44 Eufind
scaffold_68 240 7813938 7813869 Glu TTC tatgtatgag cctcctgcac0 0 60.42 43.0517.37 Eufind
scaffold_105 24 3033329 3033399 Glu TTC ctttgggagg cctcaagctt0 0 60.61 50.1010.51 Eufind
scaffold_10 1411 21599050 21598980 Glu TTC cagcatgggg tctcatgcac0 0 60.99 54.906.09 Eufind
scaffold_7 1561 51954353 51954283 Glu TTC tgatgggggg ccctcatgca0 0 61.24 49.8811.36 Both
scaffold_44 713 4137601 4137531 Glu TTC tatactgaag cccatgcaca0 0 61.33 49.6511.68 Eufind
scaffold_429 2 14378 14448 Glu TTC gccccgttgg agctgttttg0 0 61.52 39.7721.75 Both
scaffold_82 175 2066026 2065956 Glu TTC ccatttaggg cctcatgcat0 0 61.67 43.9417.73 Both
scaffold_265 10 208625 208696 Glu TTC ccccgacagg agccgttttg0 0 62.24 49.2712.97 Both
scaffold_265 20 63163 63092 Glu TTC ccctggcagg agccgttttg0 0 62.52 43.9418.58 Both
scaffold_19 41 6930286 6930356 Glu TTC atagcagagg tctcctgtgc0 0 63.17 43.3519.82 Both
scaffold_56 383 6164060 6163990 Glu TTC aactttgatg tctcaagcat0 0 63.39 46.3417.05 Both
scaffold_11 1229 42850873 42850802 Glu TTC gccaaccagt gagtcttttg0 0 64.64 41.9722.67 Both
scaffold_11 638 42855295 42855366 Glu TTC gccaaccagt gagtcttttg0 0 64.64 41.9722.67 Both
scaffold_209 26 359224 359153 Glu TTC tttgggtaag agctgttttg0 0 66.22 49.4116.81 Both
scaffold_209 32 109488 109417 Glu TTC tttgggtaag agctgttttg0 0 66.22 49.4116.81 Both
scaffold_1 823 81561581 81561651 Glu TTC ctactaggtg ccccacacgc0 0 66.91 52.2514.66 Both
scaffold_60 208 13990410 13990481 Glu TTC ccccagcagg agctattttg0 0 67.24 50.5816.66 Both
scaffold_209 15 383629 383700 Glu TTC ccccagcagg agctgttttg0 0 67.37 45.8021.57 Both
scaffold_541 2 11938 12009 Glu TTC ctctgggagt agctgttttg0 0 68.58 50.2318.35 Both
scaffold_72 188 5787836 5787766 Glu TTC gtgcttagag cctcataagc0 0 68.92 46.7522.17 Both
scaffold_60 227 13877995 13877924 Glu TTC tcccagcagg agctgttttg0 0 70.44 47.7722.67 Both
scaffold_4 1482 77868035 77867965 Glu TTC taggatgggg tctcatgggc0 0 71.07 53.3217.75 Both
scaffold_11 634 42758914 42758985 Glu TTC atttgccagt aaaggctttt0 0 72.33 49.6622.67 Both
scaffold_33 470 10958967 10958896 Glu TTC tgtacgcctg agcagtccta0 0 72.33 49.6622.67 Both
scaffold_60 191 13548584 13548655 Glu TTC tccccgcagg agcggttttg0 0 72.33 49.6622.67 Both
scaffold_60 233 13706909 13706838 Glu TTC tgctggcagg agctgttttg0 0 72.33 49.6622.67 Both
scaffold_49 601 6985665 6985594 Glu TTC gagcagcact agcactgaca0 0 75.00 51.6923.31 Both
scaffold_23 799 24695475 24695404 Glu TTC gttcgtcgtc tgccaccaaa0 0 76.26 53.7222.54 Both
scaffold_23 800 24694316 24694245 Glu TTC ttttcgcgtg aaaacagcct0 0 76.26 53.7222.54 Both
scaffold_95 62 1423350 1423279 Glu TTC ttctgtgtct aacagtgtca0 0 76.26 53.7222.54 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
scaffold_11 413 25284336 25284405 Gly ACC ctattaaaga cctcaggtgg0 0 24.46 16.727.74 Both
scaffold_62 134 13045269 13045339 Gly ACC cagatgggag cctcatgtgt0 0 29.95 10.6619.29 Both
scaffold_15 830 49856902 49856833 Gly ACC aggactgggg cctcattcac0 0 40.70 20.5220.18 Both
scaffold_55 352 9676029 9675959 Gly ACC agaagataca cctcgtgtgc0 0 51.59 36.5915.00 Both
scaffold_2 308 28680852 28680921 Gly CCC ctctataggg ctgcatgcac0 0 32.58 15.7816.80 Both
scaffold_81 6 801678 801748 Gly CCC cctcctgaat cttcatgctt0 0 32.72 23.549.18 Both
scaffold_2 1535 93206005 93205935 Gly CCC ttttggtgag cctcatgtac0 0 35.27 25.2210.05 Both
scaffold_7 421 37516706 37516776 Gly CCC ggaatgtgaa cctcatgtgc0 0 38.21 28.499.72 Both
scaffold_0 602 49287176 49287246 Gly CCC ccagatgggg catcatgcgc0 0 39.09 27.0112.08 Both
scaffold_11 1015 61219966 61219896 Gly CCC tataatgggg cctcacatac0 0 39.25 33.655.60 Both
scaffold_17 1212 187335 187265 Gly CCC ccccagagaa aagcttcctc0 0 41.72 30.5211.20 Both
scaffold_9 588 51209549 51209619 Gly CCC gaaaacgggg ccccatgagc0 0 42.07 31.8510.22 Both
scaffold_16 717 50724559 50724487 Gly CCC actcagtgac cctcacgtgt0 0 42.15 29.7612.39 Both
scaffold_57 19 3511161 3511231 Gly CCC agctattctg ctcctctttt0 0 43.38 26.9516.43 Both
scaffold_1 1083 99048936 99049006 Gly CCC ttgcactgtc cctcctgagc0 0 44.70 30.7014.00 Both
scaffold_21 562 39322284 39322214 Gly CCC agttggtgac gttcatgcat0 0 44.74 33.9710.77 Both
scaffold_74 17 1507927 1507997 Gly CCC agggcttgag cccatgtaca0 0 46.88 26.8620.02 Both
scaffold_25 1065 1669104 1669034 Gly CCC tgtccagggg ccttgtgagc0 0 47.56 41.685.88 Both
scaffold_2 2134 33201766 33201696 Gly CCC tgtttaagga cctcatatgc0 0 47.62 40.287.34 Both
scaffold_26 507 32470918 32470988 Gly CCC attttgggag ccttaagcac0 0 47.78 38.289.50 Both
scaffold_1 1148 102787877 102787947 Gly CCC taaccagggg tctcatgtgc0 0 49.57 37.5212.05 Both
scaffold_9 1614 45781179 45781109 Gly CCC atttaagtgg cctcatgtat0 0 49.96 39.3010.66 Both
scaffold_7 382 34565703 34565773 Gly CCC catttagagg cctcaagcac0 0 50.58 29.3621.22 Both
scaffold_34 228 16840061 16840131 Gly CCC tgctggtaag cctcgtgtgc0 0 50.92 34.7916.13 Both
scaffold_124 46 1681652 1681722 Gly CCC tcttatgggg tctcatgtct0 0 51.16 41.949.22 Both
scaffold_15 994 37571037 37570967 Gly CCC tttttgcaag tctcatgtgc0 0 51.19 36.3614.83 Both
scaffold_44 135 7265241 7265311 Gly CCC atcctaggag cttcaagtgc0 0 51.47 39.0712.40 Both
scaffold_11 616 41646876 41646946 Gly CCC tcatattgag cttcatgtac0 0 51.69 35.8215.87 Both
scaffold_10 792 62880182 62880252 Gly CCC actgatgggg cctccagggt0 0 51.78 37.6914.09 Both
scaffold_31 566 17103070 17103000 Gly CCC taggaatgag cctcttgtgc0 0 51.92 40.7811.14 Both
scaffold_13 387 24045725 24045795 Gly CCC gagaatgagg ccacaaacgc0 0 51.96 35.7716.19 Both
scaffold_9 983 78237395 78237465 Gly CCC tagagtggag cgtcatgggc0 0 51.97 46.285.69 Both
scaffold_0 20 1321751 1321821 Gly CCC tactcgtgca cgtcacgcac0 0 52.34 30.6521.69 Both
scaffold_58 204 11454652 11454582 Gly CCC gttctatgag cctcatgtgt0 0 52.39 30.3922.00 Both
scaffold_12 1285 40001219 40001149 Gly CCC taacatgagg cttcctgtgc0 0 52.45 35.2017.25 Both
scaffold_6 2316 1335615 1335545 Gly CCC gcaaggcaga cctcactggt0 0 54.02 31.2822.74 Both
scaffold_75 205 9431161 9431091 Gly CCC accccgtgag tctcatgcgg0 0 54.10 36.5117.59 Both
scaffold_0 1625 123146203 123146133 Gly CCC agtccagggg ccccatgcac0 0 55.72 45.2710.45 Both
scaffold_15 1447 2863379 2863309 Gly CCC tccttatgag tctcttgtgc0 0 55.85 37.0218.83 Both
scaffold_10 320 22749046 22749116 Gly CCC atagcatgag cttcatgcac0 0 55.98 37.2118.77 Both
scaffold_245 4 103022 103092 Gly CCC ccgtgcacaa caacacgaat0 0 56.77 47.918.86 Eufind
scaffold_34 631 5488352 5488282 Gly CCC gagcagaggt cctcatgtgc0 0 56.84 50.915.93 Eufind
scaffold_70 71 2991605 2991675 Gly CCC cacggcgagg cctcatgtgc0 0 57.17 45.8211.35 Both
scaffold_0 1590 125013689 125013619 Gly CCC tgcttatgag cctcatgcat0 0 57.18 45.3511.83 Eufind
scaffold_30 319 25747538 25747609 Gly CCC ctctttgtca gccattttgg0 0 57.35 38.9418.41 Eufind
scaffold_18 83 6439637 6439707 Gly CCC tttgagcacg cctcaagcgc0 0 57.39 45.1212.27 Eufind
scaffold_34 23 1053425 1053495 Gly CCC gaccagtgaa cctcacacac0 0 57.55 46.7110.84 Both
scaffold_3 94 7130675 7130745 Gly CCC aagacctgca cctcatgttt0 0 57.90 33.9024.00 Both
scaffold_44 354 16239686 16239756 Gly CCC ttttaggagg cctcacgtac0 0 57.95 50.807.15 Both
scaffold_71 269 844260 844190 Gly CCC ctattggggg cagccactgt0 0 58.16 41.5816.58 Both
scaffold_70 228 8633177 8633247 Gly CCC tggcaagagg cgtcatgcac0 0 58.21 50.967.25 Eufind
scaffold_40 237 20918492 20918562 Gly CCC gtacccgagg cctcaagcag0 0 58.47 35.6522.82 Both
scaffold_1 1426 95764023 95763953 Gly CCC ggagatgtgg cctcatgtgc0 0 58.73 50.098.64 Eufind
scaffold_68 127 8942882 8942952 Gly CCC tcatggtgca ccccatgcac0 0 58.80 42.1316.67 Both
scaffold_7 1893 18164486 18164416 Gly CCC atgatctagg cctcatgggc0 0 59.09 52.116.98 Both
scaffold_16 1333 5356405 5356335 Gly CCC cttacatggg cctgacgtca0 0 59.62 42.1317.49 Both
scaffold_170 19 301672 301742 Gly CCC tttgcataag cgtcatgtcc0 0 59.72 53.546.18 Both
scaffold_39 508 17837562 17837492 Gly CCC ttcttagggg cctcatgtac0 0 59.93 34.7825.15 Both
scaffold_4 217 11351419 11351489 Gly CCC tattgtaggg cctcatgtac0 0 60.08 55.025.06 Both
scaffold_9 747 63926676 63926746 Gly CCC ggttgtgtaa gatgtaccta0 0 60.75 40.6520.10 Both
scaffold_33 41 4254943 4255013 Gly CCC aggctttgag ccacactatt0 0 61.10 55.145.96 Eufind
scaffold_28 666 28434137 28434067 Gly CCC ggcagtgggt tctcaagtga0 0 61.38 41.5619.82 Both
scaffold_36 36 2724218 2724288 Gly CCC aaatgagagg cctcatgcac0 0 62.77 51.8310.94 Eufind
scaffold_0 702 57747806 57747876 Gly CCC actgtataag cgtcatgtgc0 0 67.12 53.9613.16 Both
scaffold_0 1151 106245125 106245195 Gly CCC tattgcagga cagcttttgg0 0 68.27 53.0715.20 Both
scaffold_13 1289 22886431 22886361 Gly CCC taccaactca ccccacgcgc0 0 68.62 49.4319.19 Both
scaffold_60 186 13454513 13454583 Gly CCC ctccacacag agaaaatttc0 0 68.81 54.6814.13 Both
scaffold_209 2 56004 56074 Gly CCC ccactcggaa aagcacgcgt0 0 74.79 62.3612.43 Both
scaffold_23 817 24077354 24077284 Gly CCC ggtttggggg ccatgtacag0 0 74.94 53.0721.87 Both
scaffold_127 55 2077457 2077387 Gly CCC aacaacagag gctagtgacg0 0 75.67 56.6119.06 Both
scaffold_27 629 21951923 21951853 Gly CCC gcttccgtaa accgttttgt0 0 76.98 51.0525.93 Both
scaffold_127 72 1693384 1693314 Gly CCC tcccaggcaa agagctcttt0 0 79.31 60.9818.33 Both
scaffold_127 27 1800897 1800967 Gly CCC gcgtagcgaa ggcttttggt0 0 80.05 60.0020.05 Both
scaffold_60 236 13528500 13528430 Gly CCC ccccacagaa ggttcccttc0 0 80.05 60.0020.05 Both
scaffold_60 5 111606 111676 Gly CCC aaacccaaca tgtcgtcttt0 0 80.05 60.0020.05 Both
scaffold_127 62 1870848 1870778 Gly CCC ttatcagtca cactttttca0 0 83.11 60.0923.02 Both
scaffold_38 441 3464660 3464591 Gly GCC tgcctaaggt cctcatagac0 0 30.25 23.636.62 Both
scaffold_4 1391 84166187 84166117 Gly GCC tttagttgag cctcatgcac0 0 45.16 33.3411.82 Both
scaffold_47 511 4314747 4314677 Gly GCC gttagtcggg tctcaagcgc0 0 45.20 40.045.16 Both
scaffold_35 198 14148495 14148565 Gly GCC tgtctgtcag atatttcacc0 0 46.38 36.869.52 Both
scaffold_44 513 14091913 14091843 Gly GCC agctctgggg cctcatgctg0 0 48.55 31.8816.67 Both
scaffold_127 56 2042982 2042913 Gly GCC aactcatagg gcccactgtc0 0 48.66 41.647.02 Both
scaffold_10 865 68635232 68635162 Gly GCC aaccacaaga catcggtacg0 0 51.94 43.028.92 Both
scaffold_35 45 2941026 2941096 Gly GCC atgctatgaa cctcaagtgc0 0 55.17 41.6713.50 Eufind
scaffold_51 426 3257276 3257206 Gly GCC tttttgtagc gcccactgtc0 0 55.17 44.9910.18 Eufind
scaffold_7 1482 58784620 58784550 Gly GCC atgaagcagc gcccactgtc0 0 55.54 36.9018.64 Both
scaffold_23 686 31427404 31427331 Gly GCC cttttgaagt ccttggaaga0 0 56.08 39.6616.42 Eufind
scaffold_11 1258 40916302 40916232 Gly GCC tttgtttgtg ccacatgtgc0 0 56.38 41.2315.15 Both
scaffold_15 21 1993434 1993504 Gly GCC ggcattaatg gctaagtctt0 0 56.43 45.4111.02 Both
scaffold_6 1527 62226065 62225995 Gly GCC tatacaggag catcatgcac0 0 57.97 35.9722.00 Both
scaffold_26 666 23340852 23340782 Gly GCC attgttgggg cctcatgggc0 0 58.26 46.8811.38 Both
scaffold_47 342 14270634 14270564 Gly GCC agcagagggg cctcatgtgc0 0 58.30 44.3913.91 Both
scaffold_20 967 14935648 14935578 Gly GCC gtattccatc gcccgccgtc0 0 59.68 51.568.12 Eufind
scaffold_48 166 14752884 14752954 Gly GCC ctcagctgga gcagttgaaa0 0 60.32 40.8719.45 Both
scaffold_48 167 14754371 14754441 Gly GCC gctagctgga gcttgtttac0 0 65.27 49.2016.07 Both
scaffold_4 1778 51641612 51641542 Gly GCC aagccattca acactttaac0 0 66.17 47.4218.75 Both
scaffold_33 466 10991035 10990965 Gly GCC cgccggcagc gctgagtgtt0 0 70.20 54.1916.01 Both
scaffold_7 360 30449875 30449945 Gly GCC agattgccca acactccact0 0 72.30 56.8615.44 Both
scaffold_48 234 14743018 14742948 Gly GCC gacatctggc gcagttgact0 0 74.64 60.1714.47 Both
scaffold_108 92 2435290 2435360 Gly GCC ttgtcatttg gcgctccagg0 0 75.47 61.4913.98 Both
scaffold_108 175 2884304 2884234 Gly GCC acaacgggaa gcttgtcgac0 0 81.62 61.5720.05 Both
scaffold_108 217 2286926 2286856 Gly GCC cttatatcga gaattaactc0 0 81.62 61.5720.05 Both
scaffold_108 68 1993848 1993918 Gly GCC gtacaaggaa acggctactt0 0 81.62 61.5720.05 Both
scaffold_33 464 11008409 11008339 Gly GCC cacagcgccg gtggagtgtt0 0 81.62 61.5720.05 Both
scaffold_47 153 12170942 12171012 Gly GCC gtccctgaat tcacgtaagt0 0 81.62 61.5720.05 Both
scaffold_48 174 15202232 15202302 Gly GCC aaccgccaca agggagctct0 0 81.62 61.5720.05 Both
scaffold_48 233 14743682 14743612 Gly GCC gacagctgga gggctgcttt0 0 81.62 61.5720.05 Both
scaffold_33 467 10982816 10982746 Gly GCC cgccggcagc gtcccctgtc0 0 82.15 62.5819.57 Both
scaffold_33 469 10975872 10975802 Gly GCC cgccggcagc gtcccctgtc0 0 82.15 62.5819.57 Both
scaffold_50 93 10038062 10038139 Gly TCC attagtggag tctcatgtac0 0 20.95 10.2110.74 Both
scaffold_10 205 13414280 13414350 Gly TCC ttgtatgggg cctcatatac0 0 21.99 12.459.54 Both
scaffold_23 346 27228160 27228230 Gly TCC tgctttatat acctcacgtg0 0 26.50 17.668.84 Both
scaffold_30 458 20141844 20141774 Gly TCC gcaggaagag actcaggtgc0 0 26.96 21.585.38 Both
scaffold_128 16 1870179 1870249 Gly TCC tatcatgggt cctcatgtgc0 0 27.07 17.509.57 Both
scaffold_29 1053 8929514 8929444 Gly TCC gccagtggga cctcatgcac0 0 27.11 18.918.20 Both
scaffold_38 372 7593916 7593847 Gly TCC gttgtagagg cctcatgcat0 0 27.73 22.265.47 Both
scaffold_20 1015 11385662 11385592 Gly TCC aacagagggt tctcacgtgc0 0 28.33 14.5913.74 Both
scaffold_11 1804 1331910 1331841 Gly TCC gtaccaggtg actcatgtgt0 0 28.84 22.796.05 Both
scaffold_3 1127 98804330 98804400 Gly TCC atgctgggga tctcgtaagc0 0 28.88 16.2812.60 Both
scaffold_65 41 1939325 1939395 Gly TCC tttgcagggg ccccgtgagc0 0 29.01 23.885.13 Both
scaffold_68 48 4938142 4938212 Gly TCC aggactgagg ccttctgtgc0 0 29.13 14.6814.45 Both
scaffold_49 435 14440424 14440354 Gly TCC aggctttgga cctcacatgc0 0 29.19 22.286.91 Both
scaffold_37 179 15705803 15705873 Gly TCC tagagcgtgg cctcatgtgc0 0 29.27 15.8113.46 Both
scaffold_98 32 3565671 3565741 Gly TCC agacagtagg cttcatgtgc0 0 29.71 21.747.97 Both
scaffold_17 328 31571894 31571963 Gly TCC caaagagcag catcacgtgc0 0 30.21 24.445.77 Both
scaffold_89 108 3449155 3449084 Gly TCC tagtgtgggg cctcgtgcac0 0 30.91 24.975.94 Both
scaffold_17 556 46865828 46865897 Gly TCC acaccaggga cctcatgtgt0 0 30.95 25.415.54 Both
scaffold_9 577 50492371 50492441 Gly TCC tgacatgggt cttcatgcac0 0 31.19 24.027.17 Both
scaffold_17 57 5234086 5234156 Gly TCC tatacatcga cctcatgtgc0 0 31.49 15.1716.32 Both
scaffold_35 342 23206842 23206765 Gly TCC gttataggat cctaatgtgc0 0 31.86 24.067.80 Both
scaffold_25 701 24563373 24563303 Gly TCC aagttaagga ccccaggagt0 0 32.08 20.0212.06 Both
scaffold_207 4 53711 53781 Gly TCC ctctctgggg cctgccgcac0 0 32.19 21.6410.55 Both
scaffold_37 15 1425510 1425580 Gly TCC tgaatatgag cctcatgctt0 0 32.22 26.425.80 Both
scaffold_1 335 36160565 36160635 Gly TCC gttattatct cctcatgcac0 0 32.23 17.0115.22 Both
scaffold_50 194 16959847 16959930 Gly TCC aggatgaggg ccacagtgag0 0 32.46 16.6715.79 Both
scaffold_30 449 20529963 20529893 Gly TCC aaatctgagg cctcatgcac0 0 32.58 26.845.74 Both
scaffold_7 1283 77463977 77463907 Gly TCC gttggggggg cctcaagtgc0 0 32.74 26.106.64 Both
scaffold_4 1761 52697188 52697118 Gly TCC tggaagggtg tctcaagtgc0 0 33.01 25.697.32 Both
scaffold_6 939 73128146 73128216 Gly TCC tagttcagag cctcacatac0 0 33.30 23.919.39 Both
scaffold_7 1723 37624651 37624582 Gly TCC ccaggagagg cttcatgtgc0 0 33.48 25.727.76 Both
scaffold_3 2301 6616235 6616165 Gly TCC tggtaagagg cctccatgta0 0 33.60 27.386.22 Both
scaffold_18 151 9554120 9554190 Gly TCC aacacaggag cttcatgcgt0 0 33.90 24.889.02 Both
scaffold_9 1483 54888636 54888566 Gly TCC ttaaataggg cctcatgagt0 0 34.29 17.0417.25 Both
scaffold_114 100 1167727 1167657 Gly TCC ccaggagcgg cctcatgtct0 0 34.54 27.287.26 Both
scaffold_47 416 11073672 11073602 Gly TCC ggaggagggg tctcatgtga0 0 34.82 21.4513.37 Both
scaffold_9 1501 53539771 53539701 Gly TCC ggccttgagg cctcgtgtgc0 0 34.94 28.156.79 Both
scaffold_10 936 61764458 61764389 Gly TCC catcgagggg ccccgtgcgg0 0 35.10 25.309.80 Both
scaffold_38 153 9560929 9560999 Gly TCC ggcctatgag cctcgtgtgt0 0 35.41 22.7612.65 Both
scaffold_11 828 58776701 58776771 Gly TCC attatgtgag cttcaccagt0 0 35.51 22.9012.61 Both
scaffold_16 1132 23723732 23723662 Gly TCC ttagtggggg cctcgagtgc0 0 35.52 19.2616.26 Both
scaffold_43 186 11813266 11813335 Gly TCC cccttgtgag cccatcaata0 0 35.72 25.3310.39 Both
scaffold_1 1725 75908447 75908374 Gly TCC acaagatact cctcaggcac0 0 35.77 26.868.91 Both
scaffold_12 403 32968103 32968173 Gly TCC gtctaagaag cctcatgaac0 0 35.81 28.497.32 Both
scaffold_32 468 21515686 21515616 Gly TCC ggaagtgagc cctcactcgt0 0 36.40 24.6811.72 Both
scaffold_38 113 7035348 7035419 Gly TCC gtatgtggag cctcatgtgc0 0 36.47 28.807.67 Both
scaffold_56 334 9619862 9619792 Gly TCC taatgagagt catcaaacac0 0 36.55 28.298.26 Both
scaffold_1 1338 99310563 99310494 Gly TCC ctggtatgaa cctcatgtgc0 0 36.59 23.5013.09 Both
scaffold_30 273 22049810 22049879 Gly TCC gagatagggg cctcaagcgc0 0 36.68 19.5717.11 Both
scaffold_18 946 26542355 26542286 Gly TCC gtggttcagt cctcatgcac0 0 37.13 31.575.56 Both
scaffold_100 22 1810742 1810812 Gly TCC taatcatgag cctcttgcac0 0 37.22 28.358.87 Both
scaffold_10 975 59720361 59720291 Gly TCC gaatgtggga ccctgtgtac0 0 37.34 24.4912.85 Both
scaffold_28 477 27867646 27867716 Gly TCC aaaacatgag cctcatgggc0 0 37.43 27.2310.20 Both
scaffold_22 577 42879617 42879547 Gly TCC attaaaggag cctcagatca0 0 37.56 28.409.16 Both
scaffold_4 815 60465478 60465548 Gly TCC cttaaagagg cccttgtctt0 0 37.58 28.918.67 Both
scaffold_9 2070 6317832 6317762 Gly TCC aatacagggg cctaatatac0 0 37.61 24.3713.24 Both
scaffold_117 31 2296268 2296198 Gly TCC tgagctgggg cctcatacac0 0 37.70 24.4813.22 Both
scaffold_17 576 48547551 48547621 Gly TCC atgattgggg cttgtgtgta0 0 37.76 19.6318.13 Both
scaffold_2 1702 78816485 78816415 Gly TCC ctaaccggga cctcatgctc0 0 37.86 30.777.09 Both
scaffold_19 746 37281899 37281829 Gly TCC tttactgggg cctcgggtgc0 0 38.12 32.845.28 Both
scaffold_56 91 8583842 8583912 Gly TCC ggttaatgag cttcatgcac0 0 38.37 28.2010.17 Both
scaffold_31 121 8293383 8293453 Gly TCC atctatgggg cctcaagtgc0 0 38.52 28.939.59 Both
scaffold_47 119 9423364 9423434 Gly TCC aactgatcgt cctcaaacac0 0 38.53 28.609.93 Both
scaffold_89 65 5457391 5457461 Gly TCC tagcattaat cctcatgtgc0 0 38.59 28.2610.33 Both
scaffold_147 38 845756 845685 Gly TCC tctaagaagg cctcatgtgt0 0 38.85 22.6816.17 Both
scaffold_3 1762 55029846 55029776 Gly TCC tggggagagg cctcataccc0 0 38.86 27.2111.65 Both
scaffold_13 704 48439312 48439382 Gly TCC ttcatttgga tctaatgcac0 0 38.96 30.578.39 Both
scaffold_30 594 9104126 9104056 Gly TCC cgtaaagagg cctcaagcag0 0 38.96 32.046.92 Both
scaffold_54 325 5820409 5820339 Gly TCC aagatatgag ccttatacac0 0 39.17 32.656.52 Both
scaffold_9 1838 28004518 28004448 Gly TCC tttttgtgag cctcatgtgc0 0 39.22 28.2211.00 Both
scaffold_1 1686 78219280 78219210 Gly TCC ccatttctag cctcacgtgc0 0 39.26 20.0819.18 Both
scaffold_119 18 712554 712624 Gly TCC gtatttagag cctcagtgga0 0 39.36 32.516.85 Both
scaffold_77 52 5017082 5017152 Gly TCC agataatggg caccatgtgc0 0 39.44 24.4514.99 Both
scaffold_12 1799 3488016 3487946 Gly TCC cagtgggtgt cctcaagtgc0 0 39.59 30.908.69 Both
scaffold_6 60 3811401 3811471 Gly TCC tttttgttgg cgttatgtgc0 0 39.99 32.077.92 Both
scaffold_71 115 8392438 8392508 Gly TCC tgacacgggg ccctcaagtg0 0 40.03 21.6118.42 Both
scaffold_25 389 21708724 21708794 Gly TCC tggagagggg ccccaggtgc0 0 40.14 27.7612.38 Both
scaffold_18 1364 713646 713576 Gly TCC gactgtgggg cctcaagtct0 0 40.15 30.209.95 Both
scaffold_45 304 15177451 15177521 Gly TCC acaaagacag cttcacgtgc0 0 40.26 29.2111.05 Both
scaffold_75 241 7727126 7727056 Gly TCC ctttcatgaa ccccgtgcac0 0 40.31 31.778.54 Both
scaffold_35 550 4558046 4557976 Gly TCC tagaatgagg cctgattgca0 0 40.33 33.207.13 Both
scaffold_12 66 4341875 4341945 Gly TCC tttagtatgt cttgtacaca0 0 40.38 30.779.61 Both
scaffold_47 472 7371973 7371903 Gly TCC tgagttgagg cctcaagcgc0 0 40.67 35.655.02 Both
scaffold_64 168 11769019 11768949 Gly TCC gtgtatgagg cttcaagtgc0 0 40.77 28.9411.83 Both
scaffold_11 244 8229996 8230067 Gly TCC attttgttgg cttcatgcac0 0 40.80 26.2514.55 Both
scaffold_16 351 34289134 34289204 Gly TCC aggccaaggg cctcatgcac0 0 40.80 34.756.05 Both
scaffold_160 7 516145 516075 Gly TCC tacatggggg ccgcaagcat0 0 40.82 33.956.87 Both
scaffold_5 234 18948954 18949024 Gly TCC gtaaaggagg cctcaagtgc0 0 40.87 27.5613.31 Both
scaffold_14 281 25508916 25508986 Gly TCC atgtattgga cctgcaggtt0 0 41.04 26.3314.71 Both
scaffold_18 1124 15895689 15895619 Gly TCC ctgtaacggg tctcatatgc0 0 41.06 32.928.14 Both
scaffold_28 295 16969375 16969446 Gly TCC agtgcactag cttcatgtgc0 0 41.07 23.3917.68 Both
scaffold_47 517 3792443 3792373 Gly TCC ggccatgggg cctcacgcat0 0 41.18 35.176.01 Both
scaffold_2 2465 2896553 2896484 Gly TCC ccagcatcta cttcaggtgc0 0 41.25 24.8916.36 Both
scaffold_56 58 5232416 5232485 Gly TCC ttatggagga cctcatgcat0 0 41.26 27.8213.44 Both
scaffold_57 295 8200379 8200309 Gly TCC ttcccatgag cctcaagcac0 0 41.28 28.4812.80 Both
scaffold_6 1763 42375236 42375166 Gly TCC atactagggg cctgtctgtc0 0 41.32 34.986.34 Both
scaffold_42 64 5264766 5264836 Gly TCC ttggaagggg cctcaagcac0 0 41.38 32.648.74 Both
scaffold_9 334 31360850 31360920 Gly TCC gccattgggg cctcaagtgc0 0 41.51 29.3512.16 Both
scaffold_2 2226 26837031 26836962 Gly TCC agtcatggga cttcatgtac0 0 41.64 31.3810.26 Both
scaffold_34 442 17956022 17955952 Gly TCC ctacttcagg ccacatgtgc0 0 41.74 23.5318.21 Both
scaffold_28 787 21480991 21480921 Gly TCC agtttgagag cctcatgtac0 0 41.88 34.896.99 Both
scaffold_22 522 39198276 39198346 Gly TCC taaagtaagg cctcctgtgc0 0 42.07 32.469.61 Both
scaffold_4 746 52724150 52724220 Gly TCC atttactgag cctcatgcac0 0 42.09 25.3616.73 Both
scaffold_21 1060 12084 12014 Gly TCC tacatagggg ccgccaccac0 0 42.17 37.015.16 Both
scaffold_56 179 13864660 13864730 Gly TCC agccaagggg cctcatgcac0 0 42.26 36.995.27 Both
scaffold_28 896 15729799 15729729 Gly TCC actttggagg cccatgtgca0 0 42.44 36.525.92 Both
scaffold_26 1045 1851916 1851846 Gly TCC aggaagacag cctcatgtgc0 0 42.48 35.596.89 Both
scaffold_2 1599 87833464 87833391 Gly TCC catcattgag tttcctgggc0 0 42.66 28.7913.87 Both
scaffold_57 192 14473158 14473088 Gly TCC tagttatgac ccttatgtgt0 0 42.67 36.905.77 Both
scaffold_59 350 5133528 5133458 Gly TCC agagttgggg cctcatgcac0 0 42.82 25.5917.23 Both
scaffold_4 216 11288710 11288780 Gly TCC gagtatgggg cctcatgcac0 0 42.85 34.897.96 Both
scaffold_9 313 29916544 29916614 Gly TCC cctggggaag ccccatacgc0 0 42.86 33.379.49 Both
scaffold_3 2037 27228507 27228437 Gly TCC caatctgggg ccatactcac0 0 42.92 30.2312.69 Both
scaffold_44 60 3053882 3053952 Gly TCC aagggagggg cttcatgcac0 0 42.95 37.435.52 Both
scaffold_12 1746 6673673 6673603 Gly TCC gctataaggg cctcacaaac0 0 43.00 32.7710.23 Both
scaffold_9 926 74661610 74661679 Gly TCC gtgtccaggg cctcaggcac0 0 43.01 29.8213.19 Both
scaffold_3 579 51536450 51536520 Gly TCC cgaagtgggg cctcataggt0 0 43.10 38.095.01 Both
scaffold_65 155 7910946 7911016 Gly TCC tatttgggga tctcatgcgc0 0 43.20 31.5211.68 Both
scaffold_28 317 18302903 18302973 Gly TCC gagcagggag actcatgtgt0 0 43.33 35.178.16 Both
scaffold_15 1413 6613467 6613397 Gly TCC tacagaggag cctcatgcac0 0 43.38 28.4114.97 Both
scaffold_13 240 16772894 16772964 Gly TCC tttttatgat cctcacgtgc0 0 43.39 30.8912.50 Both
scaffold_9 847 69735131 69735201 Gly TCC tttaatggca cctcaggcac0 0 43.42 31.3412.08 Both
scaffold_70 391 8207877 8207808 Gly TCC gtgctgagca cctgatacac0 0 43.49 25.8717.62 Both
scaffold_26 246 13335024 13335094 Gly TCC aataagcgag ccttaggagt0 0 43.63 33.1010.53 Both
scaffold_12 1337 37331346 37331277 Gly TCC tgtgccaggg cctagagcac0 0 43.74 32.5011.24 Both
scaffold_0 665 54490834 54490904 Gly TCC ccaaagaggg cctcatacac0 0 43.80 36.367.44 Both
scaffold_0 1308 117971871 117971941 Gly TCC cagtatggga ccgcacgtgc0 0 43.81 26.0017.81 Both
scaffold_6 349 22154758 22154828 Gly TCC aacattgagg cctggtgtgc0 0 43.84 36.527.32 Both
scaffold_23 234 21559440 21559510 Gly TCC acatgctaag tctcatgcat0 0 43.89 38.285.61 Both
scaffold_57 288 8318937 8318867 Gly TCC aatatatggg cctcatgagc0 0 43.96 26.2417.72 Both
scaffold_8 487 40236995 40237065 Gly TCC aaataagaga cctcgtgtgc0 0 44.08 27.6516.43 Both
scaffold_2 948 88638351 88638421 Gly TCC taccagggga cctcaagcac0 0 44.09 38.705.39 Both
scaffold_7 1951 13169190 13169120 Gly TCC attatgtgag cctcatgtgc0 0 44.10 35.488.62 Both
scaffold_0 598 48909063 48909133 Gly TCC tcaaaagggg cctcatcccc0 0 44.19 38.325.87 Both
scaffold_1 2098 43541394 43541324 Gly TCC ggctatgagg cctcatctgc0 0 44.27 31.7312.54 Both
scaffold_15 1261 18060408 18060338 Gly TCC gagagcgagg cctcatatgc0 0 44.27 34.959.32 Both
scaffold_68 337 549412 549342 Gly TCC atgatagcgg cctatgagcg0 0 44.28 34.469.82 Both
scaffold_25 128 6943732 6943802 Gly TCC ctcccgtgag cctcatgtgc0 0 44.36 35.768.60 Both
scaffold_52 11 817367 817437 Gly TCC cgtgagtctg cctcaagtgc0 0 44.38 33.7010.68 Both
scaffold_10 1317 30726498 30726428 Gly TCC attaaggggg cctcatgtac0 0 44.40 33.1411.26 Both
scaffold_1 1003 95722319 95722389 Gly TCC atccatgggg cctcatgcat0 0 44.45 26.7517.70 Both
scaffold_6 1500 65460410 65460340 Gly TCC ctctccaaga cctcaagtgc0 0 44.47 30.4614.01 Both
scaffold_98 61 4326168 4326098 Gly TCC tgacatggag catagtgtgc0 0 44.51 32.3712.14 Both
scaffold_27 486 33349132 33349202 Gly TCC gaaaattggg cctcatatgc0 0 44.56 28.1916.37 Both
scaffold_8 54 6348389 6348459 Gly TCC tgatatgagg cttcatgtgt0 0 44.59 23.3621.23 Both
scaffold_28 865 17344063 17343993 Gly TCC atattaggag ccccatgtgc0 0 44.59 34.0310.56 Both
scaffold_109 39 2980598 2980528 Gly TCC agaagagggg ccttgtgtgc0 0 44.79 26.0618.73 Both
scaffold_76 103 8799907 8799837 Gly TCC aggcacgggg cctcatgtgg0 0 44.95 28.0116.94 Both
scaffold_7 845 69364581 69364651 Gly TCC tatttacaag cctcatgtga0 0 45.03 34.8810.15 Both
scaffold_3 1578 70043903 70043832 Gly TCC agatatggtg tctcatgtgc0 0 45.07 33.3411.73 Both
scaffold_15 862 48101252 48101182 Gly TCC tgtcatgatg cctcttgtgc0 0 45.07 36.768.31 Both
scaffold_17 776 36838135 36838065 Gly TCC ttaccatgag cttcacgtgc0 0 45.12 29.6215.50 Both
scaffold_17 805 34854430 34854360 Gly TCC gctgctgaaa cctgatgagc0 0 45.14 36.708.44 Both
scaffold_12 219 16967890 16967960 Gly TCC ggggcatgag ctgcatgggc0 0 45.26 39.196.07 Both
scaffold_7 811 65768038 65768108 Gly TCC ttcttcgggg cctcatgggc0 0 45.35 21.8623.49 Both
scaffold_21 586 37915127 37915057 Gly TCC gctgcagaag tttcatgtac0 0 45.38 38.536.85 Both
scaffold_73 89 6074082 6074152 Gly TCC acaacaaggg tctcgtgcac0 0 45.41 31.2114.20 Both
scaffold_95 60 1520456 1520386 Gly TCC aataactggg cctcatgggc0 0 45.63 33.5412.09 Both
scaffold_2 270 25263089 25263159 Gly TCC caaaatgggg cctcatgcgt0 0 45.69 37.618.08 Both
scaffold_10 353 25890612 25890682 Gly TCC agcatagaag cttcaagcac0 0 45.73 28.7916.94 Both
scaffold_3 354 29182533 29182603 Gly TCC gctattgggg cctcacgtgc0 0 45.73 38.047.69 Both
scaffold_19 430 40797563 40797635 Gly TCC gaagaaaggg cctcatacgc0 0 45.74 31.5614.18 Both
scaffold_164 11 395150 395220 Gly TCC ggctaagggg cctcatgtgt0 0 45.74 39.785.96 Both
scaffold_8 952 73281277 73281347 Gly TCC aaaaatgggg ccttgtgagc0 0 45.98 37.528.46 Both
scaffold_10 1224 40608876 40608806 Gly TCC gtgtgtttta cctcaagcac0 0 46.05 38.257.80 Both
scaffold_51 299 11899242 11899172 Gly TCC ttacatgggg cctcaagcac0 0 46.06 23.1322.93 Both
scaffold_72 270 533791 533721 Gly TCC ggatgggaag cctcaagtac0 0 46.09 40.235.86 Both
scaffold_20 78 6253553 6253623 Gly TCC aataaagaga ccatgcactt0 0 46.16 20.2725.89 Both
scaffold_2 237 22506031 22506101 Gly TCC atgagtgggg cctcatgcat0 0 46.16 27.7318.43 Both
scaffold_39 528 17091668 17091598 Gly TCC atacatgggg cctcatggcc0 0 46.33 30.8715.46 Both
scaffold_27 870 8140084 8140014 Gly TCC aactcaggga cctcatgtgc0 0 46.38 35.9810.40 Both
scaffold_53 560 3258739 3258669 Gly TCC tagcttagag cctcatgtgc0 0 46.40 40.735.67 Both
scaffold_30 453 20423337 20423267 Gly TCC aatgtggggg cctcctgcgc0 0 46.67 31.7014.97 Both
scaffold_13 1440 14242180 14242110 Gly TCC aggaaatgag tctcatgtgc0 0 46.68 30.5116.17 Both
scaffold_5 913 77431180 77431250 Gly TCC acaaatggga cctcatgtgc0 0 46.70 37.349.36 Both
scaffold_0 2983 5791597 5791527 Gly TCC gggaataggg cctcatgtgc0 0 46.86 38.408.46 Both
scaffold_5 922 78296283 78296354 Gly TCC gaccatggga cctaaagcgc0 0 46.92 27.7619.16 Both
scaffold_34 245 17915154 17915224 Gly TCC ctatttgggg ctccgtatcc0 0 47.17 35.9411.23 Both
scaffold_18 1072 20472078 20472008 Gly TCC tgatttgtgg ccttgtgcac0 0 47.17 36.1511.02 Both
scaffold_69 255 6583779 6583709 Gly TCC ctgaatggag cctcgtgtgt0 0 47.23 28.5818.65 Both
scaffold_7 101 8017259 8017329 Gly TCC agatctgggg cttcatgtgc0 0 47.26 37.809.46 Both
scaffold_29 81 9551311 9551381 Gly TCC caggttaact tctcgtaagc0 0 47.27 32.1115.16 Both
scaffold_3 1126 98714612 98714682 Gly TCC aaatcataca cctcgtgtgc0 0 47.39 36.1711.22 Both
scaffold_12 490 37732589 37732659 Gly TCC gttcacgggg cttcatgtgc0 0 47.58 30.6516.93 Both
scaffold_26 294 16361807 16361877 Gly TCC actagaggag cctcacgtat0 0 47.59 36.7610.83 Both
scaffold_6 728 54278914 54278984 Gly TCC ttatactggg cctcacgcat0 0 47.59 39.358.24 Both
scaffold_1 1661 79861849 79861779 Gly TCC agttaaggag ccttatgggt0 0 47.61 39.558.06 Both
scaffold_16 976 35298792 35298722 Gly TCC aactatggga cctcctacac0 0 47.77 26.5021.27 Both
scaffold_9 795 66531685 66531755 Gly TCC gccacgtggg cctcatgtgc0 0 47.78 33.4014.38 Both
scaffold_113 131 89638 89568 Gly TCC ggtttatgag cctcgcatgt0 0 47.85 37.1210.73 Both
scaffold_28 479 28290899 28290969 Gly TCC gttagagggg cctcccatgc0 0 47.88 37.4710.41 Both
scaffold_75 13 1085610 1085679 Gly TCC tactttggga cctcacgtgc0 0 47.90 27.3420.56 Both
scaffold_6 1913 25293912 25293842 Gly TCC tgactaataa tctcatgcac0 0 47.92 33.1214.80 Both
scaffold_73 254 4635167 4635097 Gly TCC ttcggtcggg cagccaatac0 0 47.97 35.2112.76 Both
scaffold_16 898 40717278 40717208 Gly TCC gtgacacgag cctcatgagc0 0 47.99 42.625.37 Both
scaffold_71 67 4991033 4991103 Gly TCC ggggagggga tcaccgtctc0 0 48.10 23.7124.39 Both
scaffold_4 1334 90547958 90547888 Gly TCC gacatgggag ctcacgcaca0 0 48.10 31.6016.50 Both
scaffold_59 405 1830987 1830917 Gly TCC ttcagtgggg cctcttgtgc0 0 48.11 34.0014.11 Both
scaffold_51 313 11432616 11432546 Gly TCC taacaatgag cctcttgtgt0 0 48.30 40.617.69 Both
scaffold_23 1017 10243002 10242931 Gly TCC cttagagggg ccttgtacgc0 0 48.42 38.569.86 Both
scaffold_128 36 810288 810217 Gly TCC taaatatgga agtcatgtgc0 0 48.46 35.9412.52 Both
scaffold_65 330 4943132 4943062 Gly TCC agaatgtgag tctcatgcac0 0 48.46 40.388.08 Both
scaffold_18 1257 8112059 8111989 Gly TCC tgtacatgag cctcatgcac0 0 48.52 30.4718.05 Both
scaffold_6 2254 4358460 4358390 Gly TCC aatattgagg cctcatatgg0 0 48.53 36.4912.04 Both
scaffold_29 868 16325969 16325899 Gly TCC tgctgtgggg cctcaagtac0 0 48.54 30.5717.97 Both
scaffold_3 1830 49769140 49769070 Gly TCC taaatatgcg ctttatgagc0 0 48.70 35.7612.94 Both
scaffold_0 302 21398329 21398401 Gly TCC cacacagggg cctaatatat0 0 48.72 29.4719.25 Both
scaffold_17 128 13349414 13349484 Gly TCC gcacagggag cctcacgcaa0 0 48.72 31.5017.22 Both
scaffold_17 520 42970238 42970308 Gly TCC ggatgttgaa cttcatgtgc0 0 48.77 35.2513.52 Both
scaffold_16 601 47658061 47658131 Gly TCC taaaatgatg cgtcatgtgc0 0 48.89 34.6614.23 Both
scaffold_17 1150 5731269 5731199 Gly TCC ctttcaaggg cctcatgcac0 0 48.90 38.1210.78 Both
scaffold_18 742 45179673 45179603 Gly TCC ggaaatgggg cgtcatgagc0 0 48.90 38.4810.42 Both
scaffold_0 332 23087061 23087131 Gly TCC atggaatgag catatgcagc0 0 49.03 41.757.28 Both
scaffold_1 996 95315912 95315982 Gly TCC gtaggggagg cctcatgcct0 0 49.09 41.517.58 Both
scaffold_1 817 80968114 80968184 Gly TCC tgggtctgaa cctcatgtgc0 0 49.16 34.7814.38 Both
scaffold_54 100 9936606 9936676 Gly TCC ggaggagagg cttcacgtac0 0 49.17 33.5115.66 Both
scaffold_54 49 5356088 5356158 Gly TCC caagcttggg cctcatacac0 0 49.26 28.7220.54 Both
scaffold_71 122 8498874 8498944 Gly TCC cctcaatgag cctcacgtgc0 0 49.27 43.755.52 Both
scaffold_67 12 691115 691185 Gly TCC attatcgagg cttcgtgtat0 0 49.38 40.398.99 Both
scaffold_51 242 15864041 15863971 Gly TCC catgcataag cctcgggcac0 0 49.40 33.0316.37 Both
scaffold_8 1200 84505723 84505652 Gly TCC ttgtgtgggg cgtcaagtgc0 0 49.47 40.618.86 Both
scaffold_17 372 34855369 34855439 Gly TCC aaaaaagagg cctcaagtgg0 0 49.51 43.166.35 Both
scaffold_32 640 6154673 6154603 Gly TCC acaattggga cacatgctca0 0 49.51 43.785.73 Both
scaffold_2 1311 106207983 106207913 Gly TCC ttagagaggt tctcatgtgc0 0 49.52 39.829.70 Both
scaffold_27 615 22992982 22992912 Gly TCC ttgcacataa cctcatgtgt0 0 49.57 32.6316.94 Both
scaffold_18 106 7282394 7282464 Gly TCC acctttgggg tcacacgcac0 0 49.61 42.027.59 Both
scaffold_18 347 22600728 22600798 Gly TCC cctctgccca gctaatctgc0 0 49.62 41.498.13 Both
scaffold_0 3046 1728149 1728079 Gly TCC ttgagtcagg cctcatgtgg0 0 49.67 42.876.80 Both
scaffold_6 860 65235655 65235725 Gly TCC aatagtgggg cattgtgagc0 0 49.73 37.4112.32 Both
scaffold_67 338 6825380 6825310 Gly TCC tgaaagcgaa cctcaagcac0 0 49.74 35.5314.21 Both
scaffold_113 119 828601 828531 Gly TCC gcgtgaggag tctcacgtgc0 0 49.80 38.0411.76 Both
scaffold_75 65 3636978 3637048 Gly TCC gagcagtgaa cctcctacac0 0 49.81 32.7817.03 Both
scaffold_0 2807 16509809 16509739 Gly TCC tggtttgagg cctcacacgc0 0 49.85 39.2910.56 Both
scaffold_1 2045 48854497 48854427 Gly TCC taggacgggg tctcatgctt0 0 49.91 32.9316.98 Both
scaffold_21 89 6350516 6350586 Gly TCC gacctttgac cctcttgggg0 0 49.91 38.3511.56 Both
scaffold_26 48 2848545 2848615 Gly TCC ttagcatgag cctcaagcac0 0 49.91 38.5411.37 Both
scaffold_3 1752 56025302 56025232 Gly TCC agcccaggag cctcatgtgc0 0 49.95 25.4824.47 Both
scaffold_19 615 45642996 45642927 Gly TCC attgagcgag gttcaggcac0 0 50.01 24.8925.12 Both
scaffold_64 220 7432272 7432202 Gly TCC ttggatggga cgtcttacgc0 0 50.02 37.3712.65 Both
scaffold_49 452 13863206 13863136 Gly TCC ctgtggggga cctcactcac0 0 50.09 36.8313.26 Both
scaffold_114 18 732434 732504 Gly TCC ggcctaagag cctcctgcac0 0 50.09 37.4812.61 Both
scaffold_7 964 79033478 79033548 Gly TCC aaagaggggt ctttatgcac0 0 50.21 38.6711.54 Both
scaffold_50 225 14712135 14712065 Gly TCC ggcttagggg cctcatgcgc0 0 50.33 39.0611.27 Both
scaffold_113 6 129136 129206 Gly TCC ctacttgggg cctcatgtgc0 0 50.42 36.5013.92 Both
scaffold_67 346 6682300 6682230 Gly TCC cagcataggg cctcatgtac0 0 50.55 35.8114.74 Both
scaffold_36 512 14341444 14341374 Gly TCC cctggttggg ccttatacac0 0 50.55 43.606.95 Both
scaffold_6 2329 113357 113287 Gly TCC aattttgagg cctcatgcac0 0 50.56 38.9111.65 Both
scaffold_19 584 47221615 47221545 Gly TCC catagtggag cgtcatgggc0 0 50.78 35.8814.90 Both
scaffold_18 609 43312367 43312437 Gly TCC ggactccagg cctcatgcac0 0 50.80 32.5818.22 Both
scaffold_34 666 2530647 2530577 Gly TCC gtcagcaggg cttcacttca0 0 50.83 42.488.35 Both
scaffold_28 643 30644571 30644501 Gly TCC ctctgtgggg cctcgtgaac0 0 50.90 39.9810.92 Both
scaffold_31 668 11517768 11517698 Gly TCC ccttgtgggg cctcacctgc0 0 50.97 38.3412.63 Both
scaffold_63 137 8871825 8871755 Gly TCC tcacgctgga cctcatgagt0 0 51.09 22.5828.51 Both
scaffold_48 359 1485387 1485317 Gly TCC atttgcagag cctcatgtac0 0 51.09 41.809.29 Both
scaffold_26 803 15362185 15362115 Gly TCC tctggaagag cttcatgtgc0 0 51.16 37.9413.22 Both
scaffold_35 514 6599499 6599429 Gly TCC gcactagtga cttcatgtga0 0 51.16 45.795.37 Both
scaffold_67 16 870754 870824 Gly TCC ttagttggga cctcatgagc0 0 51.17 29.9221.25 Both
scaffold_16 408 37055525 37055595 Gly TCC cttacttgga tctcatatgc0 0 51.17 40.6310.54 Both
scaffold_1 1320 99977303 99977233 Gly TCC aattattgag cctcatgtgt0 0 51.18 41.639.55 Both
scaffold_10 927 62221356 62221286 Gly TCC tatcacaggg cctcatgtgc0 0 51.29 44.916.38 Both
scaffold_13 273 20053132 20053202 Gly TCC gactatgggg cctcatgcac0 0 51.31 40.8410.47 Both
scaffold_51 329 10534755 10534685 Gly TCC cacagcagga cctcaagggc0 0 51.37 40.2411.13 Both
scaffold_53 591 2052799 2052729 Gly TCC ggctccagga cgtcatgtac0 0 51.44 39.2812.16 Both
scaffold_14 567 55749741 55749811 Gly TCC ttggaagagg cctcatgaac0 0 51.57 41.0110.56 Both
scaffold_30 365 27352786 27352716 Gly TCC tgccttctct cttcgtacac0 0 51.69 40.3511.34 Both
scaffold_30 119 10220920 10220990 Gly TCC cttggagagg cctcagaggc0 0 51.74 34.7317.01 Both
scaffold_2 566 52570542 52570612 Gly TCC ttattataag cctcatacat0 0 51.74 38.2413.50 Both
scaffold_1 978 94509689 94509759 Gly TCC gttatatgaa cctcatgtgc0 0 51.83 41.7010.13 Both
scaffold_67 133 6671137 6671207 Gly TCC taggttgagg catcatgtgc0 0 51.90 33.8118.09 Both
scaffold_58 132 9574119 9574189 Gly TCC cttagtaagg gctcatacat0 0 51.95 44.877.08 Both
scaffold_0 2720 23721122 23721052 Gly TCC tctaaagaag tctcatgcgt0 0 52.05 35.6516.40 Both
scaffold_23 250 22303896 22303966 Gly TCC tactgtgcgg cctcatgcac0 0 52.06 30.9921.07 Both
scaffold_4 1469 78477586 78477516 Gly TCC taggctgagg cctcgtgtgc0 0 52.09 42.479.62 Both
scaffold_13 1132 29955630 29955560 Gly TCC ttagaaggaa tctcatatac0 0 52.16 36.3515.81 Both
scaffold_3 1397 85115696 85115626 Gly TCC ttttcagggg cctcaagcgc0 0 52.16 45.876.29 Both
scaffold_13 575 37133786 37133856 Gly TCC cgtatgtgag ccatttgtgc0 0 52.21 36.9915.22 Both
scaffold_9 1367 65149224 65149154 Gly TCC ccagatgggg cctcatgcac0 0 52.26 44.028.24 Both
scaffold_67 245 11506015 11505945 Gly TCC aagcacagag cctcacgcac0 0 52.26 46.036.23 Both
scaffold_9 1393 62703326 62703256 Gly TCC acctctaggg cctcaagcac0 0 52.33 29.5622.77 Both
scaffold_21 996 5032792 5032722 Gly TCC ccgttgtgag cctcatgcac0 0 52.38 41.4610.92 Both
scaffold_33 148 12538783 12538853 Gly TCC tcagggcagg cctcatgcac0 0 52.39 42.999.40 Both
scaffold_53 30 1212261 1212331 Gly TCC aaaaggtgtg ccccatgcat0 0 52.41 43.528.89 Both
scaffold_19 758 36767229 36767159 Gly TCC gctaggaggg tctcaagctc0 0 52.47 31.4021.07 Both
scaffold_49 681 3514527 3514457 Gly TCC gttagtggcg cttcacacac0 0 52.50 35.6216.88 Both
scaffold_67 143 7171024 7171094 Gly TCC gtaatgtgag cctcatgtgc0 0 52.50 38.8413.66 Both
scaffold_28 63 2111915 2111985 Gly TCC ttttgtgagg cctctgtcgg0 0 52.55 39.5213.03 Both
scaffold_4 1209 97619553 97619623 Gly TCC tatagagggg cctcatgtgg0 0 52.69 47.355.34 Both
scaffold_14 766 37472748 37472678 Gly TCC attgatgggg attcatgcgc0 0 52.72 43.848.88 Both
scaffold_31 659 11850793 11850723 Gly TCC tatctttgag ctttatacat0 0 52.74 47.275.47 Both
scaffold_42 157 12468302 12468372 Gly TCC atggaatgag cctcatgcac0 0 52.82 36.1316.69 Both
scaffold_17 691 41686056 41685986 Gly TCC gggatgggga cttcatgcac0 0 52.86 35.5817.28 Both
scaffold_2 2482 1927133 1927063 Gly TCC atagtcaggg cctcacgcgc0 0 52.86 36.0116.85 Both
scaffold_2 1586 88744684 88744614 Gly TCC ctttctgggg cttcatgttc0 0 52.97 35.6717.30 Both
scaffold_54 79 8567727 8567797 Gly TCC tgctctgtgg ccacatgcac0 0 52.98 34.6318.35 Both
scaffold_72 189 5763150 5763080 Gly TCC cagtagccta cctcatgagc0 0 52.99 47.725.27 Both
scaffold_2 2180 30022518 30022447 Gly TCC ttatttgggc cctcaagcac0 0 53.01 41.6411.37 Both
scaffold_56 23 2429652 2429722 Gly TCC gttaacaggg ccttatgagc0 0 53.07 37.2715.80 Both
scaffold_11 1529 16274237 16274167 Gly TCC tgtccagaag tttcatacac0 0 53.11 44.688.43 Both
scaffold_41 162 9280710 9280780 Gly TCC catatggggg cctcacgcac0 0 53.11 45.947.17 Both
scaffold_70 23 1498537 1498607 Gly TCC aagaatgaga cacggccacc0 0 53.12 29.9923.13 Both
scaffold_7 476 40509810 40509880 Gly TCC gccctgaggg cctcttgcac0 0 53.17 36.6316.54 Both
scaffold_11 1001 62154849 62154779 Gly TCC cttactgagg cttcaagcag0 0 53.32 30.5722.75 Both
scaffold_48 200 17512967 17513037 Gly TCC tttttggggg cttcacttgt0 0 53.37 48.195.18 Both
scaffold_30 167 13713632 13713702 Gly TCC aactaagtga gctcgtgtgc0 0 53.46 48.085.38 Both
scaffold_1 741 75031960 75032030 Gly TCC ttacatgggg cctcaagtgt0 0 53.57 46.287.29 Both
scaffold_44 591 10740708 10740638 Gly TCC ttcagaggga tctcttgtgc0 0 53.61 35.5818.03 Both
scaffold_44 311 14143676 14143746 Gly TCC cagcccgagg cctctcgtgc0 0 53.61 38.2915.32 Both
scaffold_1 1459 93928131 93928061 Gly TCC taggtccacg cctcatatac0 0 53.61 44.459.16 Both
scaffold_2 996 92084883 92084953 Gly TCC ttagcaacat cctaattagc0 0 53.66 36.8916.77 Both
scaffold_35 94 5889668 5889738 Gly TCC cagttagggg cctcatgcgc0 0 53.73 47.955.78 Both
scaffold_110 35 1778731 1778661 Gly TCC ggtaactgag tctcacgtac0 0 53.80 44.719.09 Both
scaffold_102 72 4336193 4336123 Gly TCC ttacaagggg cctgaggagt0 0 53.80 46.127.68 Both
scaffold_5 2050 24681015 24680945 Gly TCC ggaacctgag cccaatgtgc0 0 53.90 45.917.99 Both
scaffold_10 1143 46265009 46264939 Gly TCC gggtaaaggg cctcaagtac0 0 53.96 48.035.93 Both
scaffold_66 177 3167667 3167597 Gly TCC ggttgagagg cctcgtgcac0 0 53.97 45.418.56 Both
scaffold_40 438 822289 822220 Gly TCC tcactgggga cctcatctgc0 0 54.04 33.4420.60 Both
scaffold_3 1052 95554105 95554175 Gly TCC taccctgtag cctcacacgc0 0 54.15 44.689.47 Both
scaffold_68 276 5930151 5930081 Gly TCC attattgagg cttcatgtgt0 0 54.19 38.4015.79 Both
scaffold_54 258 11228180 11228110 Gly TCC agtccgggtg cctcatgtgc0 0 54.20 45.428.78 Both
scaffold_8 2257 4136397 4136327 Gly TCC tatccagaag tctcaagagc0 0 54.34 36.0618.28 Both
scaffold_5 1075 93217507 93217577 Gly TCC tatatgaggg tctcatgggc0 0 54.34 45.259.09 Both
scaffold_70 251 9372226 9372296 Gly TCC acaaatggaa ccccgcgcac0 0 54.46 44.829.64 Both
scaffold_12 1765 5307052 5306982 Gly TCC tatcctgaag tctcatgtac0 0 54.55 36.0918.46 Both
scaffold_30 478 18312339 18312269 Gly TCC cactgagagg actcacgcgt0 0 54.60 38.9615.64 Both
scaffold_16 391 36381669 36381739 Gly TCC gaaaagagga ccgtatgtgc0 0 54.88 45.679.21 Both
scaffold_0 1591 124983925 124983855 Gly TCC gagggtgggg tttcatgcgc0 0 54.96 48.556.41 Both
scaffold_170 9 128686 128756 Gly TCC ctcttttgag cctcatgtgc0 0 55.00 45.359.65 Eufind
scaffold_35 432 14737077 14737007 Gly TCC tgtgtgagag cctcacgtgc0 0 55.01 36.1818.83 Both
scaffold_8 2088 18622346 18622276 Gly TCC tatctggagg cctcaagctc0 0 55.05 46.868.19 Eufind
scaffold_32 613 8869804 8869734 Gly TCC catctaagag cctcatgccc0 0 55.07 33.3721.70 Both
scaffold_56 372 7049706 7049636 Gly TCC gaagggaggg cctcatgcac0 0 55.07 47.407.67 Eufind
scaffold_21 861 14472885 14472815 Gly TCC aggcatgggg tctcatatac0 0 55.13 43.9311.20 Both
scaffold_73 115 7574447 7574517 Gly TCC ttttacaggc cctcacatgc0 0 55.17 47.437.74 Eufind
scaffold_12 689 50105087 50105157 Gly TCC atatgtcaag ccacctcacg0 0 55.19 46.348.85 Both
scaffold_28 788 21434704 21434634 Gly TCC gtgatacgag cctcatatgc0 0 55.20 44.2410.96 Eufind
scaffold_4 148 7851378 7851448 Gly TCC tattccttag cctcacatgc0 0 55.22 44.8910.33 Eufind
scaffold_4 2328 9706851 9706781 Gly TCC attccttgag cctcacgtgc0 0 55.22 44.8910.33 Eufind
scaffold_18 649 45479623 45479693 Gly TCC ggaccagggg ctttaagcac0 0 55.23 35.4019.83 Both
scaffold_60 105 7480716 7480786 Gly TCC acatcagggg cctcgagggc0 0 55.24 40.3314.91 Eufind
scaffold_25 351 19424428 19424498 Gly TCC taggtgggag cctcatgcgt0 0 55.24 45.609.64 Both
scaffold_60 404 1318317 1318247 Gly TCC agtgctaagg cctgaagcac0 0 55.25 48.716.54 Both
scaffold_7 259 18898444 18898514 Gly TCC gactgatgaa cctcatgcag0 0 55.26 38.9016.36 Eufind
scaffold_26 213 10754928 10754998 Gly TCC gtcttatgag cctcatgcac0 0 55.30 50.055.25 Eufind
scaffold_3 1220 97738132 97738062 Gly TCC gtgttacggg cctcatgtgc0 0 55.31 41.7013.61 Eufind
scaffold_51 350 8750297 8750227 Gly TCC gctaaagagg cctcaggcac0 0 55.32 39.8515.47 Both
scaffold_88 92 3441821 3441891 Gly TCC actgcaggag cctcatgcac0 0 55.33 48.067.27 Both
scaffold_39 733 5734165 5734095 Gly TCC ttcctctgtg cctcatgtgc0 0 55.34 45.1810.16 Both
scaffold_30 247 20145757 20145827 Gly TCC gttttgtgag cctcgtgtgt0 0 55.36 45.0410.32 Eufind
scaffold_15 454 33015377 33015447 Gly TCC tatacataag gttcatgtgc0 0 55.37 42.9012.47 Both
scaffold_71 143 10439252 10439322 Gly TCC gacagtggga attcttgcat0 0 55.38 45.489.90 Eufind
scaffold_0 1 14838 14908 Gly TCC ggaaggcagg tctcatgcta0 0 55.39 45.449.95 Eufind
scaffold_3 35 3915656 3915726 Gly TCC taagttgggg cctcacgtac0 0 55.41 42.3913.02 Eufind
scaffold_127 5 279959 280029 Gly TCC tacatacaaa cctcatgtgg0 0 55.49 41.2114.28 Both
scaffold_14 291 27599810 27599881 Gly TCC gggctgtgcg gtgggctgct0 0 55.56 45.1610.40 Eufind
scaffold_45 246 12233494 12233564 Gly TCC accacacgag cctcatgtca0 0 55.58 47.488.10 Eufind
scaffold_2 1165 102347870 102347940 Gly TCC ttccctgggg cctcacgcac0 0 55.60 46.708.90 Eufind
scaffold_8 422 36391400 36391470 Gly TCC cattggtggg cctaatatgc0 0 55.61 42.8712.74 Both
scaffold_32 440 23673680 23673610 Gly TCC cctaagaagg gctcaagcac0 0 55.64 32.8422.80 Both
scaffold_5 2317 5529032 5528962 Gly TCC ggaatggggg cctcatgtgc0 0 55.64 50.575.07 Eufind
scaffold_83 251 1745863 1745793 Gly TCC tgggctgggg cctcgtgcgc0 0 55.65 48.876.78 Both
scaffold_13 336 22484357 22484427 Gly TCC aataacagag cctaccactc0 0 55.69 34.6021.09 Both
scaffold_9 991 78986706 78986776 Gly TCC catcccatgg cctcgtgtgt0 0 55.72 33.4322.29 Both
scaffold_8 46 6042454 6042524 Gly TCC ggtttggggg cctcatgcct0 0 55.72 42.0613.66 Both
scaffold_40 362 12090577 12090507 Gly TCC gattgaggag ctcctgtgcc0 0 55.80 38.1917.61 tRNAscan
scaffold_16 1220 16896457 16896387 Gly TCC agatagaggg cctcacatgc0 0 55.80 39.0316.77 Eufind
scaffold_1 1473 93565320 93565250 Gly TCC gttcaatgag cctcatgttc0 0 55.83 42.6313.20 Eufind
scaffold_6 321 19834915 19834985 Gly TCC ataaatgggg tctcaaacac0 0 55.84 42.0913.75 Both
scaffold_156 33 997467 997397 Gly TCC tgaaccacgg cctgatgcgc0 0 55.85 39.4416.41 Both
scaffold_12 1238 42859220 42859150 Gly TCC gaaaagaaag tggtctgtca0 0 55.87 45.0610.81 Both
scaffold_4 2298 11799868 11799798 Gly TCC gttccttatc actcacgcgc0 0 55.88 39.3516.53 Eufind
scaffold_35 561 3480581 3480511 Gly TCC agagcagagg ctttgtgcgc0 0 55.90 40.0215.88 Eufind
scaffold_49 91 5343218 5343288 Gly TCC tgagtcgggg cggcatatgc0 0 55.96 49.526.44 Both
scaffold_4 699 49558057 49558127 Gly TCC actagtgagg cctcaagcac0 0 56.03 40.0415.99 Both
scaffold_14 535 53964638 53964708 Gly TCC cattcacagg tctcaggtgt0 0 56.03 43.7312.30 Both
scaffold_5 2132 19997258 19997188 Gly TCC atattggggg ctgcactcac0 0 56.05 29.9726.08 Both
scaffold_6 665 48937963 48938033 Gly TCC taccatgaag cagctgtcac0 0 56.12 39.3016.82 Both
scaffold_16 666 50924720 50924790 Gly TCC ttattgggga cctcatgtac0 0 56.12 41.9914.13 Both
scaffold_39 152 9559717 9559787 Gly TCC tttgaattga cgtcattgtg0 0 56.13 31.1225.01 Eufind
scaffold_54 142 11859943 11860013 Gly TCC tggggggggt cctcatgcac0 0 56.14 39.1017.04 Both
scaffold_16 1006 33292789 33292719 Gly TCC aaagagggca cctcctgtgc0 0 56.14 49.456.69 Eufind
scaffold_4 1475 78225965 78225895 Gly TCC gcttatgggg cctcatatgc0 0 56.15 49.806.35 Eufind
scaffold_12 761 53548048 53548118 Gly TCC actaagtaag cctcatgcag0 0 56.18 44.7411.44 Both
scaffold_47 450 8698047 8697977 Gly TCC gctacctgaa cttcatgcgt0 0 56.21 47.608.61 Eufind
scaffold_70 202 7634824 7634894 Gly TCC agttacgggg cctcaagtgc0 0 56.22 46.459.77 Eufind
scaffold_38 366 7983498 7983428 Gly TCC aataaaggaa cctcatgcac0 0 56.22 50.605.62 Both
scaffold_45 140 7521777 7521847 Gly TCC gacaggggtt cctctaggcc0 0 56.25 41.2515.00 Eufind
scaffold_2 1427 100389411 100389341 Gly TCC atgataatag cctcatgtgc0 0 56.28 47.818.47 Eufind
scaffold_31 312 21558660 21558730 Gly TCC gaaatgggag cctcatgcac0 0 56.34 42.9813.36 Eufind
scaffold_15 1031 33715549 33715479 Gly TCC attttgtgag cctcatgcac0 0 56.34 45.6910.65 Eufind
scaffold_0 971 86453285 86453355 Gly TCC gatcagtgaa ttcatgggca0 0 56.37 45.9610.41 Eufind
scaffold_53 308 14208803 14208733 Gly TCC gtcatgagag tctcatgcac0 0 56.38 46.439.95 Eufind
scaffold_24 51 9449653 9449723 Gly TCC ctttagagag cctcatgtgc0 0 56.39 41.5014.89 Both
scaffold_89 120 2395881 2395811 Gly TCC atcaatggag cctcatgcga0 0 56.39 43.8012.59 Eufind
scaffold_99 44 3202861 3202932 Gly TCC tcagaggagg ccacatgcgt0 0 56.39 46.739.66 Eufind
scaffold_28 3 151477 151547 Gly TCC ctgaaagata cctcacatgc0 0 56.41 43.1313.28 Eufind
scaffold_10 6 410401 410471 Gly TCC gcaagaggag cctcacgcac0 0 56.41 47.219.20 Both
scaffold_70 194 7463593 7463663 Gly TCC gagccaggag tctccagtgc0 0 56.45 47.099.36 Both
scaffold_54 206 14624470 14624400 Gly TCC gaatgagagg ccccatgcac0 0 56.47 43.0913.38 Both
scaffold_39 211 12613128 12613198 Gly TCC agggggcagg gctcacgcac0 0 56.47 43.1113.36 Both
scaffold_94 258 1721473 1721403 Gly TCC tgcagataag cttcatgtgc0 0 56.50 39.4217.08 Both
scaffold_25 244 13387641 13387712 Gly TCC ggttggtagg cctcacccac0 0 56.50 41.0115.49 Eufind
scaffold_13 985 42484057 42483987 Gly TCC ttacagtgag cctcatatgc0 0 56.55 35.0221.53 Both
scaffold_44 668 7005334 7005264 Gly TCC aagtttgagg cgtcatgtgc0 0 56.55 44.1912.36 Eufind
scaffold_54 320 6704524 6704454 Gly TCC gcttcagggt cctcatgcac0 0 56.62 40.2816.34 Both
scaffold_94 176 4322262 4322192 Gly TCC ctttatgggg cctcgttctc0 0 56.63 42.4014.23 Both
scaffold_10 666 52797019 52797089 Gly TCC ctgtatgggg cctcatacac0 0 56.64 41.4815.16 Eufind
scaffold_11 853 61642105 61642175 Gly TCC agaataaggg cctcatgtat0 0 56.66 41.9714.69 Eufind
scaffold_16 631 49457368 49457438 Gly TCC acagtatgag cctcacccac0 0 56.67 44.0512.62 Eufind
scaffold_51 171 12005908 12005978 Gly TCC gcaagtgggg tctcacactc0 0 56.72 42.2214.50 Eufind
scaffold_39 383 21306678 21306748 Gly TCC caaattattt ccttatgccc0 0 56.72 46.4810.24 Eufind
scaffold_18 129 8053799 8053869 Gly TCC ataaactcct cctcatacat0 0 56.75 37.6819.07 Both
scaffold_3 2058 26311574 26311504 Gly TCC agaaatgaag cttcatgcac0 0 56.75 49.017.74 Eufind
scaffold_18 1278 7275703 7275633 Gly TCC tgtcaagggg cctcacgtgt0 0 56.79 41.7515.04 Eufind
scaffold_3 2300 6621646 6621576 Gly TCC ttgttatgag tctcttgcac0 0 56.79 45.3711.42 Both
scaffold_18 590 41605549 41605619 Gly TCC acattacagg ccacatttgc0 0 56.80 48.348.46 Eufind
scaffold_16 970 35557894 35557824 Gly TCC gagaatgggg cctcacgcac0 0 56.83 51.725.11 Eufind
scaffold_55 503 2880772 2880702 Gly TCC cacaatgagg cctcatgagt0 0 56.84 36.4120.43 Eufind
scaffold_32 251 20047081 20047151 Gly TCC aaacatgagg cctcaggcac0 0 56.88 48.718.17 Both
scaffold_4 1980 38022601 38022531 Gly TCC ttgagtgtgg cctcaagcac0 0 56.89 30.8226.07 Both
scaffold_13 1339 21249311 21249241 Gly TCC ttactggggg cctcacgtgc0 0 56.89 41.6115.28 Eufind
scaffold_7 888 72745649 72745719 Gly TCC tatcctgggg cctcatatgc0 0 56.93 45.3611.57 Eufind
scaffold_6 1043 82868333 82868403 Gly TCC tggacagggg ccatgcgcac0 0 56.95 34.7522.20 Both
scaffold_94 210 3332021 3331951 Gly TCC cctacttgag cctcacgcgt0 0 56.98 49.987.00 Eufind
scaffold_57 53 6616424 6616494 Gly TCC aaacagtagg cctcatatgc0 0 56.99 48.348.65 Both
scaffold_33 209 18530935 18531006 Gly TCC tgactaacgg gtgggctgac0 0 57.01 44.5412.47 Eufind
scaffold_12 656 48371364 48371434 Gly TCC taatggtgaa cctgatgcac0 0 57.07 45.0412.03 Eufind
scaffold_8 849 68636328 68636398 Gly TCC attgggaagg cctcaagcac0 0 57.08 51.745.34 Both
scaffold_14 400 36663217 36663287 Gly TCC ttgcatgggg cctcagggga0 0 57.11 45.4711.64 Eufind
scaffold_44 107 6085532 6085602 Gly TCC aaaggtgagg ctttcatgat0 0 57.18 40.9516.23 Both
scaffold_49 381 16568880 16568810 Gly TCC gtgatatgaa tcttctgcac0 0 57.19 40.4916.70 Eufind
scaffold_18 1066 20961355 20961285 Gly TCC aagaatgggg cctcgtgcac0 0 57.20 47.999.21 Both
scaffold_55 275 14005619 14005689 Gly TCC agccattgag tctcatggga0 0 57.20 49.497.71 Eufind
scaffold_28 1029 7724330 7724260 Gly TCC catttaagga cctcaggtgc0 0 57.26 51.925.34 Eufind
scaffold_28 286 16548627 16548697 Gly TCC aggagagagg cctcatgagc0 0 57.28 48.468.82 Both
scaffold_28 532 31715418 31715488 Gly TCC ttgattgagg cctcaggcac0 0 57.30 52.115.19 Both
scaffold_13 1319 21999159 21999089 Gly TCC tcctatgggg cctcaggcac0 0 57.31 51.316.00 Eufind
scaffold_2 1290 107297471 107297401 Gly TCC tacaaggaag cctcacactc0 0 57.34 43.3114.03 Both
scaffold_7 1820 24035423 24035353 Gly TCC tatttgtgag ctaaatgatt0 0 57.42 36.9220.50 Both
scaffold_114 117 113896 113826 Gly TCC gtgggatgag cctcaactgt0 0 57.50 47.4510.05 Eufind
scaffold_47 534 2085788 2085718 Gly TCC tcccactgtg cctcatgtgc0 0 57.51 38.4219.09 Both
scaffold_0 1287 116877228 116877298 Gly TCC tgtggtgcta cctcatacat0 0 57.53 43.0214.51 Both
scaffold_58 122 8894133 8894203 Gly TCC ggagtaccag cgtcatgtgc0 0 57.56 38.7918.77 Both
scaffold_16 207 21574671 21574742 Gly TCC ctcaccaggg cctcctgtgt0 0 57.56 45.4712.09 Both
scaffold_13 120 7970933 7971003 Gly TCC ggtatgaaat cctcgtgtac0 0 57.57 51.456.12 Eufind
scaffold_18 952 26468069 26467999 Gly TCC ttaaatgggg cctcatgtgc0 0 57.58 44.6612.92 Both
scaffold_14 769 36828843 36828774 Gly TCC aaattttatg cctcatgggc0 0 57.59 43.8913.70 Eufind
scaffold_5 1186 97329056 97328986 Gly TCC tgaggcaagg cctcatgtac0 0 57.60 50.377.23 Eufind
scaffold_16 397 36599763 36599833 Gly TCC tggggaagag cctaaagtgc0 0 57.62 51.606.02 Eufind
scaffold_32 240 19092319 19092389 Gly TCC gagtggggaa cctcatgcat0 0 57.65 39.0418.61 Both
scaffold_62 228 4098140 4098070 Gly TCC ggtagtacgg cctcaggtac0 0 57.68 33.2524.43 Both
scaffold_119 19 722551 722632 Gly TCC gtaccaggag ccttatgcac0 0 57.70 44.7013.00 Eufind
scaffold_53 451 7373751 7373681 Gly TCC taacaaagag cctcgtgcac0 0 57.75 49.328.43 Eufind
scaffold_51 224 16824412 16824482 Gly TCC aagttggcag cctcatgtgc0 0 57.76 47.3910.37 Eufind
scaffold_29 994 12350372 12350302 Gly TCC gaatacgggg tctcatgtgc0 0 57.77 48.419.36 Eufind
scaffold_7 582 47498185 47498255 Gly TCC aagtacggag cctcatgtgc0 0 57.82 40.8516.97 Both
scaffold_88 68 2696567 2696637 Gly TCC cgtttactgg cctcctgtgt0 0 57.83 43.0314.80 Eufind
scaffold_13 644 42824179 42824249 Gly TCC tggaaagagg tctcaagtac0 0 57.90 39.1318.77 Both
scaffold_10 42 1665292 1665362 Gly TCC tcatttgggg ccttatgcac0 0 57.95 39.4518.50 Eufind
scaffold_7 280 19436110 19436180 Gly TCC caacaaggcg cctcatgaac0 0 57.98 47.8110.17 Both
scaffold_44 57 2995458 2995528 Gly TCC ggaagaggtg cctcatatgt0 0 58.00 43.4914.51 Both
scaffold_4 62 4413055 4413125 Gly TCC ggtagggagg tctcgtgtag0 0 58.01 51.466.55 Eufind
scaffold_58 227 10574231 10574161 Gly TCC cagtagagag cctcatgtct0 0 58.06 45.7612.30 Both
scaffold_27 163 9547423 9547493 Gly TCC tgtggataaa cctcatgtgc0 0 58.08 47.1710.91 Eufind
scaffold_46 338 568933 568863 Gly TCC ttagtagagg cttcacgtgc0 0 58.18 42.8315.35 Both
scaffold_16 497 41787942 41788012 Gly TCC gcattagaga cctcatgcgc0 0 58.19 39.1919.00 Both
scaffold_18 638 44903084 44903154 Gly TCC aaacaatgag cctcatgcgc0 0 58.22 42.2216.00 Both
scaffold_6 1339 83899546 83899476 Gly TCC gactaacgag cctcatgtgc0 0 58.30 38.8519.45 Both
scaffold_2 1615 86726252 86726182 Gly TCC tggagagggg ctcctgtgta0 0 58.38 47.1611.22 Both
scaffold_12 1342 36698046 36697977 Gly TCC ccaagagggg cctcatgcac0 0 58.43 39.5318.90 Both
scaffold_8 1099 79898637 79898707 Gly TCC tgaaaggggg cctcaaacac0 0 58.51 45.8412.67 Eufind
scaffold_5 1228 95426084 95426014 Gly TCC ggagggggga cctcaggtac0 0 58.55 40.0118.54 Both
scaffold_45 322 15835803 15835873 Gly TCC aactccagtg tctcatgcac0 0 58.55 45.2013.35 Eufind
scaffold_68 111 8650034 8650104 Gly TCC catgggcagg cctcatggga0 0 58.57 50.438.14 Eufind
scaffold_81 70 7022097 7022027 Gly TCC actttagagg cctcatgtgc0 0 58.61 44.8313.78 Both
scaffold_6 443 27949897 27949967 Gly TCC ggtcatagga cctcgtgcac0 0 58.63 43.4515.18 Eufind
scaffold_56 177 13767666 13767736 Gly TCC acgacacgtg cctcatgtgc0 0 58.67 47.7910.88 Both
scaffold_5 43 4311054 4311124 Gly TCC acaatactgg catcacggat0 0 58.67 51.307.37 Eufind
scaffold_12 389 31169660 31169730 Gly TCC gcctctggag cctcacgtac0 0 58.68 37.6221.06 Both
scaffold_4 327 20202687 20202757 Gly TCC ttctgtgggg gctcatacgc0 0 58.77 37.9820.79 Both
scaffold_13 1303 22533452 22533382 Gly TCC ttaatatatg cctcatatgc0 0 58.84 39.0019.84 Eufind
scaffold_1 1834 68887206 68887136 Gly TCC tattatgaag cctcatgctc0 0 58.98 48.3810.60 Eufind
scaffold_20 287 20801191 20801261 Gly TCC gggaagtgag ccttgggcac0 0 59.02 40.6718.35 Both
scaffold_0 1366 121598138 121598208 Gly TCC agtacttatg cctcatgtgc0 0 59.03 44.7514.28 Eufind
scaffold_37 227 21493036 21493106 Gly TCC ggtttagaga cctcaagcac0 0 59.04 46.4412.60 Eufind
scaffold_30 465 18941089 18941019 Gly TCC cctggaaggg cctcaaacgc0 0 59.05 43.5815.47 Both
scaffold_65 266 7967389 7967319 Gly TCC tatatgtgag cctacctcct0 0 59.08 53.255.83 Eufind
scaffold_39 286 17193921 17193991 Gly TCC taatctaggg cctcatgcgc0 0 59.09 47.2311.86 Both
scaffold_0 1644 122086553 122086483 Gly TCC tcactgtgag cctcatgtgc0 0 59.12 44.1215.00 Both
scaffold_44 426 18043795 18043725 Gly TCC ttttgatgag cttcatgtgc0 0 59.23 48.3210.91 Both
scaffold_59 174 12510834 12510904 Gly TCC acctgaggcg cttcacatgc0 0 59.26 46.7412.52 Eufind
scaffold_48 239 14367245 14367174 Gly TCC gaaagagcgg cctcaagcac0 0 59.34 51.048.30 Eufind
scaffold_31 160 11140980 11141050 Gly TCC tacaaggagg cctcacgtgc0 0 59.36 38.9620.40 Both
scaffold_22 131 13777302 13777372 Gly TCC tcttaatgag cctcatgcgc0 0 59.40 44.7614.64 Eufind
scaffold_12 70 4412634 4412704 Gly TCC catcatgggg cgtcgtgcac0 0 59.41 43.6415.77 Both
scaffold_94 84 2981624 2981693 Gly TCC cgcaacgaga cctcctgtgc0 0 59.47 43.5215.95 Eufind
scaffold_18 254 15934327 15934397 Gly TCC gtatgtgggg cctcatgcac0 0 59.48 46.9212.56 Eufind
scaffold_13 1370 20441938 20441868 Gly TCC cattccagga cctcatgctc0 0 59.63 49.689.95 Both
scaffold_34 244 17906309 17906379 Gly TCC tgaactgggg cctcaagcac0 0 59.71 48.8410.87 Eufind
scaffold_18 1160 14466459 14466389 Gly TCC tcaaggagaa cctcatgtgc0 0 59.73 52.177.56 Eufind
scaffold_12 1385 34975392 34975322 Gly TCC agagttgggg cctcatgcac0 0 59.76 50.629.14 Eufind
scaffold_6 1154 91474626 91474696 Gly TCC cacacacaca cctcatgctt0 0 59.78 47.1412.64 Eufind
scaffold_6 2193 7391374 7391304 Gly TCC acattagagg ctttgtgcac0 0 59.79 45.8213.97 Eufind
scaffold_16 768 48434513 48434443 Gly TCC ccagtttaaa cctcaagccg0 0 59.85 53.386.47 Both
scaffold_28 294 16924039 16924109 Gly TCC tttttctggg cctcacgtgc0 0 59.88 43.2216.66 Both
scaffold_20 623 42519523 42519453 Gly TCC gaggtatgag cctcaagcac0 0 59.89 44.3815.51 Both
scaffold_12 307 25123750 25123820 Gly TCC cagcatttca cttcatgcac0 0 59.96 52.747.22 Eufind
scaffold_0 148 9435784 9435854 Gly TCC gaaacagaag cctcaagcac0 0 59.97 40.4419.53 Eufind
scaffold_114 28 1319770 1319840 Gly TCC agcgaggcca cctcatgagc0 0 59.99 36.4323.56 Both
scaffold_1 393 42635058 42635128 Gly TCC tttataagag cttcatgtgc0 0 59.99 44.1915.80 Both
scaffold_2 1394 102129811 102129741 Gly TCC ttattagagg cgtcatgttc0 0 60.06 52.897.17 Both
scaffold_2 1433 100236541 100236470 Gly TCC cattataact cttatgtgca0 0 60.09 48.7511.34 Both
scaffold_68 88 7649416 7649486 Gly TCC cagtttaggg cctcatgcac0 0 60.16 43.6416.52 Both
scaffold_17 584 49467348 49467418 Gly TCC gatctaagct cttcatgtgc0 0 60.20 43.5616.64 tRNAscan
scaffold_0 177 10498132 10498202 Gly TCC gatgctgagg tctcacatgc0 0 60.25 42.2717.98 Both
scaffold_6 1807 37670136 37670066 Gly TCC agggaatgaa cctcatgcgc0 0 60.31 46.8013.51 Both
scaffold_1 924 91273354 91273425 Gly TCC cccttttgca gtgggctgac0 0 60.34 51.408.94 Eufind
scaffold_70 424 6815225 6815155 Gly TCC ttaagggtag cctcatatgc0 0 60.42 42.8217.60 Both
scaffold_12 1639 13551833 13551763 Gly TCC tgtgatagag cctcatgcac0 0 60.47 53.147.33 Eufind
scaffold_26 126 7099568 7099637 Gly TCC gggcggggga cctcatgtgt0 0 60.49 44.8815.61 Eufind
scaffold_70 164 6345413 6345483 Gly TCC acatgaaaag cctcattcct0 0 60.50 54.486.02 Eufind
scaffold_26 549 33279001 33278932 Gly TCC ggcagatggg cctcatgtgc0 0 60.52 36.1124.41 Both
scaffold_84 1 170556 170626 Gly TCC caactgcgag cctcctgcac0 0 60.65 52.618.04 Eufind
scaffold_56 112 10352004 10352074 Gly TCC ggggcgtgag cctcatgcac0 0 60.78 46.3814.40 Eufind
scaffold_64 203 8899499 8899429 Gly TCC tttacttgag tctcatgtgc0 0 60.81 51.289.53 Both
scaffold_18 435 26898281 26898351 Gly TCC acctgtgagg actcaagtgc0 0 60.85 46.5314.32 Both
scaffold_2 595 55076429 55076499 Gly TCC ttcagtgggg cctcatgtgc0 0 60.86 44.6316.23 Both
scaffold_25 124 6847641 6847711 Gly TCC atgaatggag gctttgcatg0 0 60.91 44.8616.05 Both
scaffold_115 56 1305869 1305799 Gly TCC taactatgaa cctcctgcgt0 0 60.95 48.6912.26 Eufind
scaffold_8 1240 82764037 82763967 Gly TCC tgcatgtggg cttcatgtgc0 0 61.03 43.7317.30 Both
scaffold_8 1305 79202894 79202824 Gly TCC tctgcctgag cctcatgctt0 0 61.08 48.3512.73 Both
scaffold_6 356 22450798 22450868 Gly TCC tgctgggagg cctcaagcat0 0 61.17 46.7914.38 Both
scaffold_23 873 21545888 21545818 Gly TCC cccaaagagg cctcatgctc0 0 61.20 47.1614.04 Both
scaffold_80 33 3331544 3331614 Gly TCC tcttgcgggg catgcgtgtt0 0 61.31 53.118.20 Eufind
scaffold_28 783 21567972 21567902 Gly TCC tccctaggag cctcgtgcat0 0 61.44 47.2414.20 Both
scaffold_18 935 26860065 26859995 Gly TCC ccagcatgag cctcatgtgt0 0 61.48 47.0314.45 Both
scaffold_1 2402 7212353 7212284 Gly TCC gcccattgag cctaacgtgc0 0 61.51 48.7612.75 Eufind
scaffold_13 301 21202017 21202087 Gly TCC tgactaaggg cctcaggcac0 0 61.52 56.495.03 Eufind
scaffold_22 136 14175938 14176008 Gly TCC ataatcggga cctcatggac0 0 61.56 42.7018.86 Both
scaffold_44 310 14098090 14098160 Gly TCC gtgaatgggg cctcatgcac0 0 61.69 54.137.56 Both
scaffold_12 714 51312639 51312709 Gly TCC tacagtgggg cctcatgtgt0 0 61.69 54.697.00 Eufind
scaffold_94 243 2248357 2248287 Gly TCC attatagagg cctcatgcgc0 0 61.75 50.7211.03 Eufind
scaffold_55 58 3014865 3014935 Gly TCC tatcaagggg cttcacactc0 0 61.82 43.4418.38 Both
scaffold_7 1932 15787086 15787016 Gly TCC gaaagaggag ggttatatgc0 0 61.83 43.2518.58 Both
scaffold_31 676 11319488 11319418 Gly TCC ggggacgggg gtttatacac0 0 61.91 43.3218.59 Eufind
scaffold_6 1727 45390233 45390163 Gly TCC agctatgacg cctcaagcac0 0 61.91 48.8313.08 Both
scaffold_30 188 15254940 15255010 Gly TCC cgtgaaggag cctcacgcat0 0 61.94 50.2511.69 Both
scaffold_2 935 88033708 88033778 Gly TCC actaagaggg cctcgtgcgc0 0 62.02 55.646.38 Eufind
scaffold_0 2923 8049689 8049619 Gly TCC aatttaggga cctcaggcac0 0 62.12 42.5019.62 Both
scaffold_28 71 2675663 2675733 Gly TCC agtagtgagg cctcatgcac0 0 62.21 48.6813.53 Eufind
scaffold_39 243 14779882 14779952 Gly TCC aatattgggg ccacatgcac0 0 62.35 51.0811.27 Both
scaffold_0 1492 128890289 128890359 Gly TCC gtaaagaagt ccgcatacta0 0 62.50 51.4111.09 Both
scaffold_1 2195 32603562 32603492 Gly TCC ataatgacct cctcatgtgc0 0 62.57 48.1714.40 Both
scaffold_46 337 699713 699643 Gly TCC tgaggtagag tctcacacac0 0 62.60 48.6413.96 Both
scaffold_36 260 15392203 15392273 Gly TCC gctagatggg tctcaagtgc0 0 62.62 45.1417.48 Both
scaffold_34 118 9241804 9241874 Gly TCC gagctgggag cttcatgtgc0 0 62.66 46.6116.05 Both
scaffold_12 1313 38473796 38473726 Gly TCC tatagatgag gctaccaccc0 0 62.70 42.9619.74 Both
scaffold_44 91 5542299 5542369 Gly TCC acccaagggg ctcatgcaca0 0 62.80 51.0711.73 Eufind
scaffold_24 372 29939716 29939642 Gly TCC agcaatggga cctcatgtgt0 0 62.98 53.889.10 Both
scaffold_0 298 21113310 21113381 Gly TCC gggactccat tcttatgtga0 0 63.00 40.6422.36 Eufind
scaffold_7 733 60438253 60438323 Gly TCC cttcagaggg cctcattgcg0 0 63.06 49.2113.85 Both
scaffold_10 939 61585115 61585045 Gly TCC tcgcgaggag ccccacacac0 0 63.10 52.7910.31 Both
scaffold_25 55 3642060 3642130 Gly TCC ctgagtggaa cctcatatgc0 0 63.17 44.9718.20 Both
scaffold_18 985 25244824 25244754 Gly TCC accaagagtg tctcatgtgc0 0 63.21 51.0212.19 Both
scaffold_58 173 11933116 11933186 Gly TCC atatcaggag cctcatgcat0 0 63.23 38.5524.68 Both
scaffold_45 337 16721755 16721825 Gly TCC tcacaccgag cctcgtgcgc0 0 63.29 56.706.59 Both
scaffold_88 304 2947077 2947007 Gly TCC agttgtagag cgtcatgtgc0 0 63.46 50.8012.66 Eufind
scaffold_166 11 781911 781841 Gly TCC acgtccgggg ccttatgcga0 0 63.54 52.4211.12 Both
scaffold_40 334 14304180 14304110 Gly TCC tgggtagagg cttcgtgctc0 0 63.62 42.6121.01 Both
scaffold_14 836 30817050 30816979 Gly TCC caatgccaca ggcaaacagg0 0 63.65 48.1915.46 Eufind
scaffold_45 341 16943487 16943557 Gly TCC gggtaaggag tctcacgtcc0 0 63.66 48.4715.19 Eufind
scaffold_16 383 36168027 36168097 Gly TCC agacaggaag cctcaagcac0 0 63.74 52.3711.37 Eufind
scaffold_1 1417 96006949 96006879 Gly TCC gccatgaggg cctcatgtgc0 0 63.94 45.4018.54 Both
scaffold_29 864 16382203 16382133 Gly TCC ctttttatgc cctcatgcac0 0 64.16 48.6315.53 Both
scaffold_99 118 1917146 1917076 Gly TCC ttagtgtggg cctcacgcac0 0 64.37 54.439.94 Eufind
scaffold_67 384 4258028 4257958 Gly TCC attaggcaga cctcaaaagt0 0 64.38 55.069.32 Both
scaffold_34 237 17490275 17490345 Gly TCC gaatgttggg cttcatgtgt0 0 64.42 52.4212.00 Eufind
scaffold_68 69 6994207 6994277 Gly TCC gctgttgagg gctcaagcac0 0 64.44 54.799.65 Eufind
scaffold_6 501 34284825 34284895 Gly TCC ttttatggag ccttatgtac0 0 64.45 56.987.47 Both
scaffold_19 490 45555330 45555400 Gly TCC ttatttgggg cctcacgcac0 0 64.46 49.6014.86 Eufind
scaffold_88 222 4890607 4890537 Gly TCC cctatcattt tctcatatgc0 0 64.48 49.8014.68 Both
scaffold_6 1244 91855200 91855130 Gly TCC cataatgagg ttcatgtgct0 0 64.50 48.6215.88 Eufind
scaffold_18 939 26733453 26733381 Gly TCC gctagaggga cctcaggcac0 0 64.59 39.9524.64 Eufind
scaffold_0 619 51352734 51352804 Gly TCC gaggggggga ccccatgggc0 0 64.61 53.9510.66 Both
scaffold_2 928 87856052 87856122 Gly TCC tccaggtgag cctcatgcgc0 0 64.69 51.6513.04 Both
scaffold_56 26 2747869 2747939 Gly TCC taccaatgaa cctcttgtgc0 0 64.72 49.1315.59 Both
scaffold_64 136 12062794 12062864 Gly TCC ttaatggggg cctcatgcca0 0 64.98 46.5018.48 Both
scaffold_56 48 4575169 4575239 Gly TCC tgaacaggag cctcatgggc0 0 65.22 49.0516.17 Both
scaffold_6 1787 39875768 39875698 Gly TCC atcagtacag cctcatacgc0 0 65.28 47.3017.98 Both
scaffold_45 482 11706302 11706232 Gly TCC acaccatgac tctcacgcac0 0 65.47 57.128.35 Eufind
scaffold_177 42 220776 220706 Gly TCC gtatctgggg cctcaagcac0 0 65.63 48.9816.65 Both
scaffold_56 174 13707868 13707938 Gly TCC aggcgaggag cctcatgggc0 0 65.70 42.8922.81 Both
scaffold_0 1597 124378790 124378720 Gly TCC ataggaaagg actcatgcac0 0 66.07 53.0713.00 Both
scaffold_2 1997 48884596 48884526 Gly TCC atttgtgggg tcttaagtac0 0 66.08 53.4112.67 Both
scaffold_15 947 41309145 41309075 Gly TCC ttccatgggg cctcatgcac0 0 66.21 52.9213.29 Both
scaffold_16 1317 7699331 7699261 Gly TCC tttacataat cctcatgagc0 0 66.74 47.6619.08 Both
scaffold_9 2116 446536 446465 Gly TCC aggttgtggg gtgggctgat0 0 66.78 48.4618.32 Eufind
scaffold_12 1371 35556485 35556415 Gly TCC ggttatggaa gccacgtcct0 0 67.13 47.7819.35 Both
scaffold_1 242 27855137 27855207 Gly TCC tctcagaagg tgccatgtgc0 0 67.50 58.249.26 Eufind
scaffold_49 103 5728197 5728267 Gly TCC ggccatgggg cttcaggagc0 0 67.51 52.7214.79 Eufind
scaffold_4 1816 49309222 49309150 Gly TCC ttagagagat cctcatgcat0 0 67.64 44.4223.22 Eufind
scaffold_10 1024 55604707 55604637 Gly TCC aaagttgagg cctcagaaca0 0 68.10 55.8912.21 Both
scaffold_6 1147 91209590 91209660 Gly TCC ttcttctcta cctcatgtac0 0 68.39 51.9316.46 Both
scaffold_4 2434 6013435 6013365 Gly TCC tctataaggg tctatgtgca0 0 68.72 55.5213.20 Both
scaffold_14 563 55686398 55686468 Gly TCC gccacagggg cctcaatcat0 0 69.05 54.1814.87 Both
scaffold_47 125 9712871 9712941 Gly TCC gtagctgagg cctcaagtgc0 0 69.12 46.3322.79 Both
scaffold_1 2231 27773282 27773212 Gly TCC taaaatggca ctgcatgcac0 0 69.47 52.5216.95 Both
scaffold_13 1557 6656548 6656478 Gly TCC tctaacaggg ccttgagcgc0 0 70.77 53.6717.10 Both
scaffold_11 824 58423202 58423272 Gly TCC tgggagggag cctcatgtct0 0 70.98 54.2516.73 Both
scaffold_17 950 26192709 26192639 Gly TCC gacacatgag cctcgtgccc0 0 72.02 51.7420.28 Both
scaffold_127 22 1652849 1652920 Gly TCC accgccgtgt ggttgttttt0 0 73.26 52.8320.43 Both
scaffold_33 116 10979165 10979236 Gly TCC gggccgtgcg gtgggctgac0 0 73.26 52.8320.43 Both
scaffold_33 118 11022130 11022201 Gly TCC gcctcccgag aggttgtttt0 0 73.26 52.8320.43 Both
scaffold_132 13 349162 349232 Gly TCC ctttcacgag cctcacgcac0 0 73.73 59.6314.10 Both
scaffold_5 2116 20748830 20748760 Gly TCC tttaactaga cctcatgctc0 0 73.90 53.3120.59 Both
scaffold_119 91 2853461 2853390 Gly TCC tttcgccgca ggcaagcagg0 0 76.83 56.4020.43 Both
scaffold_139 17 317988 318060 Gly TCC tacttcctgt acctaggctc0 0 80.83 57.4723.36 Both
scaffold_21 881 13551598 13551521 Gly TCC cttgaagagg tcaggtacac13551562 13551555 40.31 30.699.62 Both
scaffold_28 1062 4904782 4904698 Gly TCC ttttttcttt cctcaagcac4904746 4904732 44.34 33.8310.51 Both
scaffold_68 184 9847363 9847285 Gly TCC atatatgtag ccccatgagc9847327 9847320 48.83 31.6117.22 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
scaffold_108 188 2730981 2730909 His ATG ttctctgggt tcaccctcct0 0 40.04 28.2911.75 Both
scaffold_108 116 2778533 2778605 His ATG ctgcatgagt ttacctcctg0 0 55.04 41.8113.23 Both
scaffold_108 196 2518647 2518575 His ATG ttctctgggt ttacccttct0 0 57.55 43.6113.94 Both
scaffold_17 530 43613000 43613071 His GTG caggtggcgt tatagtctta0 0 33.14 14.8018.34 Both
scaffold_265 9 197311 197382 His GTG tttgtggtgc gtatctggca0 0 39.76 21.2518.51 Both
scaffold_209 11 330454 330525 His GTG tttgtggtgc gaatcagtgg0 0 43.56 26.3917.17 Both
scaffold_209 6 115997 116068 His GTG tttgtggtgc cgtaccggcg0 0 45.34 28.6916.65 Both
scaffold_422 2 37756 37827 His GTG tttgtggtgc gtgtctggcg0 0 45.90 23.0422.86 Both
scaffold_541 8 5386 5315 His GTG tttgtggcgc gtgtccgacg0 0 53.08 35.4617.62 Both
scaffold_60 185 13438293 13438364 His GTG tttgcggtgc gtatctggcg0 0 57.72 30.2727.45 Both
scaffold_7 626 51708963 51709034 His GTG tttgtggcat gtgtcatggt0 0 59.49 37.8721.62 Both
scaffold_11 631 42564669 42564740 His GTG cctgtggcgc ataagtggcc0 0 59.56 37.7221.84 Both
scaffold_127 50 2200664 2200593 His GTG tttgtggtgc gtgtctggcg0 0 59.93 36.4023.53 Both
scaffold_6 1070 84439001 84439072 His GTG cctgtagctt ggagaggaga0 0 61.74 34.5527.19 Both
scaffold_60 4 106539 106610 His GTG cttgtggcgc ttgtttagtg0 0 63.92 36.4727.45 Both
scaffold_11 1234 42713541 42713470 His GTG tttgtggcgc gtacctggct0 0 64.63 37.1827.45 Both
scaffold_127 23 1653771 1653842 His GTG cgggtggcgc aagaactgct0 0 64.63 37.1827.45 Both
scaffold_127 33 1923815 1923886 His GTG tctgtgagta agcagctgta0 0 64.63 37.1827.45 Both
scaffold_127 42 2207244 2207315 His GTG cttgtggcgc atgtgtggtg0 0 64.63 37.1827.45 Both
scaffold_127 51 2190401 2190330 His GTG cttgtggcgc atgtgtggtg0 0 64.63 37.1827.45 Both
scaffold_127 59 1959866 1959795 His GTG tgtgtgagtg agcagctgta0 0 64.63 37.1827.45 Both
scaffold_139 83 724166 724095 His GTG ctggtggcgt gtagttggaa0 0 64.63 37.1827.45 Both
scaffold_209 18 448776 448847 His GTG tttgtggtgc gcgtctggcg0 0 64.63 37.1827.45 Both
scaffold_209 25 377748 377677 His GTG tttgtggtgc gtgtctggcg0 0 64.63 37.1827.45 Both
scaffold_209 31 121378 121307 His GTG tttgtggtgc gtgtctggca0 0 64.63 37.1827.45 Both
scaffold_308 2 22000 22071 His GTG tttgtggtgc gtgtctggca0 0 64.63 37.1827.45 Both
scaffold_60 195 13712788 13712859 His GTG tttgtggcgc gtgacgggag0 0 64.63 37.1827.45 Both
scaffold_80 103 6983386 6983315 His GTG ccggtagctc ttgtgggaac0 0 64.63 37.1827.45 Both
scaffold_80 66 6984122 6984193 His GTG ccagtagctt ttgtgaaaaa0 0 64.63 37.1827.45 Both
scaffold_80 67 6987143 6987214 His GTG ccggtagctc ttgtgggaac0 0 64.63 37.1827.45 Both
 
scaffold_36 132 7820428 7820501 Ile AAT gttagcaggg aggaaagaca0 0 44.94 36.538.41 Both
scaffold_9 1566 49472326 49472253 Ile AAT aagtgcaagt ggggagacaa0 0 56.58 43.7212.86 Eufind
scaffold_29 610 29001030 29000957 Ile AAT atactgccct acgaaaggag0 0 56.84 40.1516.69 Both
scaffold_11 646 43515419 43515492 Ile AAT aggactttct cgtcactttt0 0 58.73 48.1410.59 Eufind
scaffold_204 7 181264 181337 Ile AAT tgttttcaat catgcttttt0 0 60.49 46.8913.60 Both
scaffold_108 138 3420687 3420760 Ile AAT ttatgcgaga aggaaaggag0 0 60.64 47.6712.97 Eufind
scaffold_12 653 48203256 48203329 Ile AAT tccaactcgc gagtttgttt0 0 61.13 48.9912.14 Eufind
scaffold_1 1970 57453362 57453289 Ile AAT actcttaagt aagaaagttg0 0 62.21 51.1611.05 Both
scaffold_139 13 218848 218921 Ile AAT tcaagcagtt ctgaaagaaa0 0 65.27 53.8311.44 Eufind
scaffold_519 2 48859 48932 Ile AAT ttcggcaagc aagaaaggag0 0 65.72 49.3716.35 Eufind
scaffold_519 4 68980 69052 Ile AAT tccttcagaa agggggaaag0 0 66.94 46.6720.27 Eufind
scaffold_7 860 70452165 70452238 Ile AAT agttgtaggt aaaatatatg0 0 66.99 43.0323.96 Both
scaffold_139 8 119211 119284 Ile AAT ttgcgcaagc aggaaaggag0 0 66.99 55.9611.03 Eufind
scaffold_108 155 3307995 3307922 Ile AAT tttggcgtgt agctggaaag0 0 68.44 52.9415.50 Both
scaffold_139 3 33722 33795 Ile AAT ttgcgcaaga agcaaaggag0 0 68.45 55.5212.93 Eufind
scaffold_139 26 518276 518349 Ile AAT tcacggtagt ctgaaagaaa0 0 68.51 47.7820.73 Eufind
scaffold_139 10 172741 172814 Ile AAT ccctgcaggt agaaaggaag0 0 70.75 52.7118.04 Eufind
scaffold_244 25 74829 74756 Ile AAT ttcctgaggt aaggagaatg0 0 71.05 56.7114.34 Both
scaffold_108 137 3404765 3404838 Ile AAT cccctgaggt atggaaaaag0 0 71.48 56.2615.22 Both
scaffold_244 20 160839 160766 Ile AAT cccctgaggt atggaaaaag0 0 72.81 54.3318.48 Both
scaffold_108 224 2212485 2212412 Ile AAT ttagcaccct gcgcagctct0 0 74.32 57.1917.13 Both
scaffold_244 23 124890 124817 Ile AAT tccctgaggt aggggaaaag0 0 76.69 54.4522.24 Both
scaffold_108 157 3294896 3294823 Ile AAT acgtcgaagt gaagagacta0 0 78.21 59.7218.49 Both
scaffold_139 5 62702 62775 Ile AAT tccttcagaa agggggaaag0 0 78.92 58.8420.08 Both
scaffold_108 158 3275697 3275624 Ile AAT ccaacgttcc gagttctctc0 0 79.02 59.7719.25 Both
scaffold_502 4 60082 60009 Ile AAT tcacacaggt ctgaaaacaa0 0 79.74 59.0920.65 Both
scaffold_139 33 648406 648479 Ile AAT ccttgcaggt cgaggaaaag0 0 80.66 60.5820.08 Both
scaffold_108 133 3347504 3347577 Ile AAT ttgcacaagc agaaaagaag0 0 80.66 62.1718.49 Both
scaffold_108 223 2224366 2224293 Ile AAT atttttgcgt ctgggagcaa0 0 80.66 62.1718.49 Both
scaffold_139 30 595187 595260 Ile AAT ttatacggtc cggaaagaag0 0 80.66 62.1718.49 Both
scaffold_139 36 700186 700259 Ile AAT acgccgcggg ctcggcagag0 0 80.66 62.1718.49 Both
scaffold_139 37 700608 700681 Ile AAT cattggcggt aaggttgctt0 0 80.66 62.1718.49 Both
scaffold_44 14 439921 439994 Ile AAT cgttatggct cttcacttta0 0 80.66 62.1718.49 Both
scaffold_47 157 12241322 12241395 Ile AAT ctactaggcc ttggttacta0 0 80.66 62.1718.49 Both
scaffold_47 395 12277433 12277360 Ile AAT tttcccagcg caaagttttt0 0 80.66 62.1718.49 Both
scaffold_9 1175 74079904 74079831 Ile AAT aatgccgggt cgggaagtct0 0 80.66 62.1718.49 Both
scaffold_108 148 3424264 3424192 Ile AAT ggacaggcga aactgggcgt0 0 80.97 61.5619.41 Both
scaffold_108 135 3367431 3367504 Ile AAT tccctgaggt aggggaaaag0 0 81.58 59.3422.24 Both
scaffold_108 143 3472013 3472086 Ile AAT tccctgaggt aggggaaaag0 0 81.58 59.3422.24 Both
scaffold_139 2 9706 9779 Ile AAT tccttgaggt aggggaaaag0 0 81.58 59.3422.24 Both
scaffold_139 7 97364 97437 Ile AAT ttcctgaggt aggggaaaag0 0 81.58 59.3422.24 Both
scaffold_244 15 279652 279579 Ile AAT ttcctgaggt aggggaaaag0 0 81.58 59.3422.24 Both
scaffold_244 17 248885 248812 Ile AAT tccctgaggt aggggaaaag0 0 81.58 59.3422.24 Both
scaffold_209 30 123527 123455 Ile TAT gttcacgggt gttgcttttt0 0 59.74 51.578.17 Both
scaffold_139 9 155144 155216 Ile TAT tacttgtagt acttaacctt0 0 72.86 54.2918.57 Both
scaffold_244 24 81822 81750 Ile TAT tacttgtagt acttaatctt0 0 78.37 59.8018.57 Both
scaffold_40 169 17495491 17495581 Ile TAT ggctaagcga cgaccctttt17495528 17495546 62.12 31.0031.12 Both
scaffold_108 221 2241047 2240954 Ile TAT gggaaagcat tgttttcttc2241009 2240990 67.58 39.3928.19 Both
scaffold_108 247 819273 819180 Ile TAT ctcaagagta gtttttctgc819235 819216 67.59 39.4028.19 Both
scaffold_139 79 858721 858628 Ile TAT gtaggtatct gcattttcca858683 858664 64.41 36.2228.19 Both
 
scaffold_2017 1 5272 5353 Leu AAG tagcctgcaa accctattgt0 0 38.98 33.495.49 Both
scaffold_14 824 32101382 32101301 Leu AAG ttttatgcat tttctgtgga0 0 42.21 35.496.72 Both
scaffold_264 3 102462 102543 Leu AAG tagcattcac actctattgt0 0 47.15 35.3911.76 Both
scaffold_143 20 545961 546042 Leu AAG tagcatgtaa actctattgt0 0 50.76 38.3612.40 Both
scaffold_318 6 104749 104830 Leu AAG tcaggagcac actctattgg0 0 53.05 37.5515.50 Both
scaffold_14 96 8747157 8747241 Leu AAG agatatgtac actctctaac0 0 53.20 46.057.15 Both
scaffold_135 3 72849 72930 Leu AAG ttgggagcaa actctattgg0 0 53.42 36.9316.49 Both
scaffold_0 963 86084290 86084372 Leu AAG tacccctatc agacaacctt0 0 62.97 43.4819.49 Both
scaffold_135 12 195823 195904 Leu AAG cgaggtgcgt actctttcgt0 0 63.43 47.0016.43 Both
scaffold_143 60 1054972 1055053 Leu AAG tagcatgcac agtgtattgc0 0 67.45 47.3520.10 Both
scaffold_108 56 888642 888723 Leu AAG ctccataagc accctattgt0 0 67.69 46.1221.57 Both
scaffold_1474 1 4960 4879 Leu AAG tgaggagcac actctattgg0 0 68.28 43.9624.32 Both
scaffold_662 1 14768 14849 Leu AAG tcgggagcac actctattgg0 0 68.28 43.9624.32 Both
scaffold_135 19 345567 345648 Leu AAG cgggatgcat actctattat0 0 69.34 47.7721.57 Both
scaffold_135 21 403942 404023 Leu AAG tgaggtgcgt actcttttgc0 0 69.34 47.7721.57 Both
scaffold_135 5 91502 91583 Leu AAG ccaggtgcag attctattgt0 0 69.37 45.6823.69 Both
scaffold_118 52 1715238 1715157 Leu AAG ggctacagcg catgcttttt0 0 69.84 50.1619.68 Both
scaffold_135 30 611581 611662 Leu AAG acaacgacat gctccttttc0 0 69.84 50.1619.68 Both
scaffold_65 71 4254766 4254847 Leu AAG acactatcta gctgagtctt0 0 69.84 50.1619.68 Both
scaffold_108 41 584145 584226 Leu AAG ttagcagggc agtctattgt0 0 71.45 48.1923.26 Both
scaffold_135 46 583344 583263 Leu AAG ccctgtgggt aggcttttcc0 0 71.96 50.5821.38 Both
scaffold_143 133 845120 845016 Leu AAG taggatgcaa actctattgt845082 845060 32.45 23.389.07 Both
scaffold_14 1054 10649291 10649185 Leu CAA gcagtcatgt cagttctatt10649253 10649220 44.38 36.487.90 Both
scaffold_1 1231 108541409 108541304 Leu CAA gtttccgtgt caatgttttt108541371 108541350 66.96 46.0320.93 Both
scaffold_108 218 2281145 2281039 Leu CAA tatgtgtagt cagttttatt2281107 2281085 64.13 43.7920.34 Both
scaffold_108 212 2315388 2315282 Leu CAA tgcacgcagt gggttcactt2315350 2315328 64.56 43.2921.27 Both
scaffold_108 93 2442030 2442136 Leu CAA tacgtgcagt acgctctgtt2442068 2442090 58.17 39.0119.16 Eufind
scaffold_108 96 2483297 2483403 Leu CAA tagaggacgt atatctcgtt2483335 2483357 66.23 42.4823.75 Both
scaffold_22 284 25069135 25069241 Leu CAA tgatttcggc cattggtttt25069173 25069195 40.87 28.8811.99 Both
scaffold_108 100 2542925 2543031 Leu CAA tagaggacgt ctgttcagtt2542963 2542985 66.23 42.4823.75 Both
scaffold_108 103 2602929 2603035 Leu CAA tagaggacga ctgttcagtt2602967 2602989 66.23 42.4823.75 Both
scaffold_108 106 2659476 2659582 Leu CAA ctacacgatt gtatctcgtt2659514 2659536 62.77 45.6617.11 Both
scaffold_108 109 2708973 2709079 Leu CAA ctacacgatt gtatgtcgtt2709011 2709033 62.77 45.6617.11 Both
scaffold_108 121 2874158 2874264 Leu CAA tatgttgtat gagttctatt2874196 2874218 55.37 39.3016.07 Both
scaffold_108 176 2880236 2880130 Leu CAA tgcgctcagt gagcttagtt2880198 2880176 66.20 42.7123.49 Both
scaffold_135 48 542315 542209 Leu CAA tttcttgagt cagagggttt542277 542255 66.46 45.5220.94 Both
scaffold_135 27 577523 577628 Leu CAA cgtctcaggt tagcactccg577561 577582 68.78 46.5222.26 Both
scaffold_54 314 7459735 7459629 Leu CAA gtacatgggt cactagtttt7459697 7459675 56.13 39.7116.42 Both
scaffold_0 906 79307999 79308105 Leu CAA ttagagtagt ctggtggtat79308037 79308059 59.23 38.9020.33 Both
scaffold_12 1456 29054703 29054622 Leu CAG aagtagggct agacaacctt0 0 47.38 27.6919.69 Both
scaffold_7 1919 16557290 16557208 Leu CAG catatctaat agacaacctt0 0 56.85 40.7316.12 Eufind
scaffold_28 1030 7585377 7585295 Leu CAG tgccaagcaa gcaaaaattt0 0 64.53 41.9022.63 Both
scaffold_139 87 672428 672346 Leu CAG aactaagcaa gcaaaggttt0 0 71.12 46.6424.48 Both
scaffold_33 463 11021449 11021367 Leu CAG ttttgcgggt gagttcccct0 0 75.90 46.8929.01 Both
scaffold_43 10 710010 710092 Leu CAG cttctgtaga aaggcagact0 0 75.90 46.8929.01 Both
scaffold_43 592 710385 710303 Leu CAG ctgtcaggaa agctgtggtt0 0 75.90 46.8929.01 Both
scaffold_33 468 10977728 10977646 Leu CAG cacagccgcc agacaacctt0 0 77.22 46.8930.33 Both
scaffold_44 791 115763 115681 Leu CAG cactcagcaa atgtggcatt0 0 77.22 46.8930.33 Both
scaffold_44 792 112092 112010 Leu CAG tattacggaa gtacagtttt0 0 77.22 46.8930.33 Both
scaffold_24 525 6578359 6578277 Leu TAA attgttaatc gaatggtttt0 0 34.39 12.8021.59 Both
scaffold_0 2569 35987631 35987553 Leu TAA ttatgcctgt ggggtttgga0 0 42.16 24.8217.34 Both
scaffold_18 942 26688635 26688565 Leu TAA aatctacgag ccttgtgcat0 0 60.59 43.5117.08 Both
scaffold_0 234 14602619 14602701 Leu TAA atgttcccac ggtggcgttt0 0 64.92 37.2927.63 Both
scaffold_139 6 90210 90282 Leu TAA tatttgtagt acttaacctt0 0 64.98 58.626.36 Eufind
scaffold_108 136 3397430 3397502 Leu TAA tatttgtagt acttaatctt0 0 65.39 59.226.17 Eufind
scaffold_63 110 12559475 12559393 Leu TAA ggctaatgac ggtggcatgg0 0 68.21 43.7224.49 Both
scaffold_108 74 2182981 2183063 Leu TAA aacttacagc gataagtttt0 0 72.57 44.8527.72 Both
scaffold_139 35 680014 680096 Leu TAA tttatccgtc aagtaatttt0 0 80.96 49.3331.63 Both
scaffold_108 97 2499969 2500075 Leu TAA tacacgcagt cgattttctt2500007 2500029 65.22 46.0419.18 Both
scaffold_108 98 2508455 2508561 Leu TAA tacacgcagt cggttttctt2508493 2508515 65.22 46.0419.18 Both
scaffold_108 104 2626620 2626726 Leu TAA tacacacagt cgactttctt2626658 2626680 65.81 44.3821.43 Both
scaffold_108 107 2675193 2675299 Leu TAA tacacgcagt ggtttccttt2675231 2675253 53.39 37.0416.35 Both
scaffold_108 110 2720464 2720570 Leu TAA tacacgcagt cggttttctt2720502 2720535 37.22 30.306.92 Both
scaffold_108 114 2762140 2762246 Leu TAA tacatacagt aggctttatt2762178 2762200 61.62 43.6517.97 Both
scaffold_108 272 345994 345913 Leu TAG cagtgtgtgc gtcctattat0 0 42.80 26.3916.41 Both
scaffold_108 285 47195 47114 Leu TAG ccacaggcgt atcctatttt0 0 47.54 37.2210.32 Both
scaffold_143 26 638784 638865 Leu TAG caacaagtgt gtactattag0 0 49.91 34.7315.18 Both
scaffold_264 1 32037 32118 Leu TAG caacacgctt gttctgtttt0 0 52.34 35.5216.82 Both
scaffold_143 7 127368 127449 Leu TAG caacacgctt attctatttt0 0 63.56 48.7514.81 Both
scaffold_143 140 701308 701227 Leu TAG caaagcaagt attctatttt0 0 65.94 44.3821.56 Both
scaffold_118 53 1704469 1704388 Leu TAG acgagcgtgt gtagtacgtt0 0 66.05 46.9119.14 Both
scaffold_65 353 4167108 4167027 Leu TAG atgcctggaa caatctttat0 0 68.14 45.5422.60 Both
scaffold_108 267 418267 418186 Leu TAG taacatgaga gttctattat0 0 70.04 46.4423.60 Both
scaffold_118 18 1603388 1603469 Leu TAG ggtgtcagca gggttgtatt0 0 71.69 50.3321.36 Both
scaffold_47 403 12165559 12165478 Leu TAG tcttcacgca gaccagagtt0 0 72.19 50.8121.38 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
scaffold_84 82 6482988 6483059 Lys CTT taatagacac gccgttcttc0 0 53.04 41.7511.29 Both
scaffold_143 70 1232288 1232360 Lys CTT gtatatgtgg acctgtatta0 0 53.46 34.0019.46 Both
scaffold_9 1704 38048696 38048624 Lys CTT gcctactagt tgagcttttc0 0 55.52 48.906.62 Both
scaffold_11 385 20871339 20871411 Lys CTT atttaaaaat taataatgga0 0 55.61 49.476.14 Eufind
scaffold_53 323 12473378 12473306 Lys CTT gtatgaaggt tgtattttag0 0 55.74 39.8015.94 tRNAscan
scaffold_53 319 12482752 12482680 Lys CTT catcacgctt cagcatttgc0 0 57.59 49.238.36 Eufind
scaffold_56 201 15158883 15158956 Lys CTT gtttaagcct ggaatggttg0 0 57.67 49.917.76 Eufind
scaffold_7 576 46975788 46975860 Lys CTT tttctctaat tgtagtttgg0 0 60.28 50.2810.00 Eufind
scaffold_28 284 16470663 16470735 Lys CTT gtatgcgggt tgcatggaaa0 0 65.61 47.2718.34 Both
scaffold_60 200 13827303 13827375 Lys CTT ctgctgtgat attacttttg0 0 67.50 47.6319.87 Both
scaffold_14 1059 10342017 10341945 Lys CTT tttgaggtct tgtactaaga0 0 69.25 51.5317.72 Both
scaffold_127 47 2302862 2302790 Lys CTT tgacttcgat ggtacttctg0 0 69.31 56.2313.08 Both
scaffold_265 2 41673 41745 Lys CTT tcgctgtggt ggtagttttt0 0 71.35 47.1524.20 Both
scaffold_127 60 1958837 1958765 Lys CTT gagttccagt tgtacattta0 0 71.51 57.3314.18 Eufind
scaffold_265 19 68342 68269 Lys CTT gttacctgtg gtccccaggt0 0 73.04 55.7917.25 Both
scaffold_127 63 1863241 1863169 Lys CTT gcattgtacc tacagttttc0 0 73.91 50.8823.03 Both
scaffold_34 654 3301215 3301143 Lys CTT gtaagcaaat tcatcattcc0 0 75.16 51.9623.20 Both
scaffold_1 1271 104285929 104285857 Lys CTT tgtctccact gagggttttt0 0 76.37 53.7122.66 Both
scaffold_245 20 12392 12320 Lys CTT aggctgtgat agcacttttg0 0 77.03 57.0020.03 Both
scaffold_60 212 14089700 14089772 Lys CTT aggctgtgat agcacttttg0 0 77.03 57.0020.03 Both
scaffold_127 24 1654724 1654796 Lys CTT aagtcccggc gggtgttttt0 0 80.47 57.8122.66 Both
scaffold_127 29 1824250 1824322 Lys CTT gcctacaggc tacagttttc0 0 80.47 57.8122.66 Both
scaffold_127 34 1924865 1924937 Lys CTT aagctactgc tgtatattta0 0 80.47 57.8122.66 Both
scaffold_127 57 2021852 2021780 Lys CTT tgtatctact tgcgttttta0 0 80.47 57.8122.66 Both
scaffold_44 797 82198 82126 Lys CTT atgcataact gctgctttca0 0 80.47 57.8122.66 Both
scaffold_28 184 9973725 9973797 Lys CTT cttccaagca gcctagtttt0 0 80.72 58.2822.44 Both
scaffold_9 1753 33846236 33846164 Lys CTT ttacacaagt caaggctttt0 0 80.72 58.2822.44 Both
scaffold_127 44 2251928 2252000 Lys CTT tgacttcagt ggtgcttttg0 0 80.79 56.4324.36 Both
scaffold_17 3 119658 119730 Lys CTT aaacagcagt ggcgcctttt0 0 80.79 56.4324.36 Both
scaffold_209 23 405179 405107 Lys CTT tggctgtggt ggtatttttt0 0 80.79 56.4324.36 Both
scaffold_209 37 3194 3122 Lys CTT tgacttcagt ggtgcttttg0 0 80.79 56.4324.36 Both
scaffold_60 182 13410972 13411044 Lys CTT tgactgtggt ggtagttttt0 0 80.79 56.4324.36 Both
scaffold_60 202 13890441 13890513 Lys CTT tgacttcagt ggtacttttt0 0 80.79 56.4324.36 Both
scaffold_602 1 22923 22995 Lys CTT gagctgcggt ggtgcttttc0 0 80.79 56.4324.36 Both
scaffold_60 219 14117413 14117341 Lys CTT caactgtgat agtacttttg0 0 80.79 56.4324.36 Both
scaffold_60 421 167225 167153 Lys CTT aagcagcagc ggtacttttt0 0 80.79 56.4324.36 Both
scaffold_44 69 3739123 3739193 Lys TTT tatatgtggg cctcatgcac0 0 29.13 22.556.58 Both
scaffold_5 2008 27500808 27500738 Lys TTT acttgtagag caatcattgc0 0 38.66 29.589.08 Both
scaffold_24 511 8433919 8433849 Lys TTT gatttatgag cctcattcac0 0 50.37 42.338.04 Both
scaffold_265 1 3581 3652 Lys TTT gccatgcagg atttgttttg0 0 50.94 33.7817.16 Both
scaffold_15 812 50658366 50658294 Lys TTT aatggctatg ttctttcact0 0 53.41 36.8016.61 Both
scaffold_48 324 4432682 4432612 Lys TTT gcgatagagg tctcatgtgc0 0 55.27 46.708.57 Eufind
scaffold_143 4 30012 30086 Lys TTT atattagaca gtctttcatt0 0 55.95 48.037.92 Eufind
scaffold_412 3 65427 65501 Lys TTT atattagaca gtctttcatt0 0 55.95 48.037.92 Eufind
scaffold_0 479 35876566 35876637 Lys TTT gatattaact atactttttg0 0 56.32 45.3610.96 Both
scaffold_37 240 22521717 22521789 Lys TTT agcctccaac tttgttcata0 0 56.84 46.949.90 Eufind
scaffold_38 218 18901354 18901426 Lys TTT taggtctgtc atgtatgcta0 0 57.78 42.2615.52 Eufind
scaffold_1 2185 33553944 33553874 Lys TTT acagttgggg tctcaagcac0 0 57.96 46.7711.19 Both
scaffold_12 612 44715118 44715188 Lys TTT ttttgagggg cctcgtgtgc0 0 58.19 49.878.32 Eufind
scaffold_66 66 6686947 6687019 Lys TTT aatcaagagc tgagagggtt0 0 58.82 48.4210.40 Eufind
scaffold_26 576 30242571 30242500 Lys TTT tctccagggc gaagttttgg0 0 60.25 45.6514.60 Eufind
scaffold_25 281 15595863 15595933 Lys TTT ttccccaggg cccatctgtc0 0 60.38 40.5519.83 Eufind
scaffold_135 18 315623 315695 Lys TTT acatacacag atctttattc0 0 60.83 50.7010.13 Eufind
scaffold_28 545 32626647 32626719 Lys TTT ttcaattata ctagcagttc0 0 61.37 52.888.49 Eufind
scaffold_2351 1 2490 2418 Lys TTT gggtaaagag gtattcttat0 0 61.45 50.4610.99 Both
scaffold_412 11 857 785 Lys TTT gggtaaagag ttactcttat0 0 61.92 50.9310.99 Both
scaffold_7 1667 41867643 41867573 Lys TTT atagtacctg cttcctttgg0 0 62.02 48.8813.14 Eufind
scaffold_143 15 360477 360551 Lys TTT atattagaca gtctttcatt0 0 62.09 48.2313.86 Eufind
scaffold_143 61 1064924 1064998 Lys TTT atattagata gtctttcatt0 0 62.09 48.2313.86 Eufind
scaffold_264 4 112886 112960 Lys TTT atattagaca gtctttcatt0 0 62.09 48.2313.86 Eufind
scaffold_135 9 123117 123189 Lys TTT gcataagtgg ttgatctttg0 0 62.47 49.2613.21 Both
scaffold_44 409 18777523 18777453 Lys TTT ataagagtgg cctcatgcac0 0 62.49 56.306.19 Both
scaffold_9 914 73533285 73533357 Lys TTT ttcattagga ttattctcat0 0 63.10 52.4010.70 Eufind
scaffold_143 29 685399 685471 Lys TTT aggtaaagag ttatcctcat0 0 63.66 52.6710.99 Both
scaffold_24 389 27213462 27213390 Lys TTT cctcataagg atatgcattt0 0 64.33 57.327.01 Both
scaffold_108 1 23714 23786 Lys TTT agataaatag ttatcagcat0 0 67.19 54.5812.61 Both
scaffold_16 1047 29982117 29982045 Lys TTT ctacccttaa ttatcctcgg0 0 67.27 53.2714.00 Both
scaffold_376 5 151013 150941 Lys TTT cagtaaagag ttatcttcct0 0 67.67 54.1913.48 Both
scaffold_1 848 83400256 83400328 Lys TTT ctatctgtga gactgtcctt0 0 67.78 59.588.20 Eufind
scaffold_12 1784 4266984 4266912 Lys TTT aaataaatac ctgccgtttg0 0 71.28 52.6218.66 Both
scaffold_264 23 216 144 Lys TTT gaatgtagag ttattctctt0 0 73.75 61.7611.99 Both
scaffold_5 1200 97000506 97000434 Lys TTT ttattggcga gaaggcttaa0 0 73.77 55.5118.26 Both
scaffold_143 171 150704 150632 Lys TTT cagtaaagag ttatcttcct0 0 75.10 61.6313.47 Both
scaffold_108 250 724679 724607 Lys TTT agatttgggg atattatcag0 0 76.24 62.9813.26 Both
scaffold_108 43 599069 599141 Lys TTT ttcacctaga ttctttcttt0 0 79.49 60.5118.98 Both
scaffold_13 1514 9214861 9214789 Lys TTT taccgctaga gttctatttc0 0 79.88 58.8721.01 Both
scaffold_108 13 188113 188185 Lys TTT gaaagtaggg gttattttca0 0 80.56 62.9017.66 Both
scaffold_108 17 239092 239164 Lys TTT caaagtagga ttatcctcat0 0 80.73 63.0817.65 Both
scaffold_108 5 77989 78061 Lys TTT gtatgtagag ttactctcat0 0 80.73 63.0817.65 Both
scaffold_135 25 453147 453219 Lys TTT cccataaggg tcattttttc0 0 80.73 63.0817.65 Both
scaffold_143 163 245268 245196 Lys TTT ggatatagag ttattctctt0 0 80.73 63.0817.65 Both
scaffold_143 49 930905 930977 Lys TTT ggatgtagag ttatcttcat0 0 80.73 63.0817.65 Both
scaffold_264 11 199166 199094 Lys TTT ggatgtagag ttattctctt0 0 80.73 63.0817.65 Both
scaffold_143 33 734752 734824 Lys TTT gaatgtagag ttattctctt0 0 81.20 63.5517.65 Both
scaffold_108 129 3222831 3222903 Lys TTT tccctcgggg ctataatctc0 0 81.41 62.4318.98 Both
scaffold_108 257 573332 573260 Lys TTT cggcacgggt ttctttgtaa0 0 81.83 60.8321.00 Both
scaffold_108 172 2906846 2906774 Lys TTT accccaggga ctatcggttg0 0 83.31 61.9521.36 Both
scaffold_108 89 2411184 2411256 Lys TTT accccaggga tgagtgatat0 0 83.31 61.9521.36 Both
scaffold_13 141 9214484 9214556 Lys TTT caaagtgagc cagtggcttt0 0 83.80 62.7821.02 Both
scaffold_44 3 86107 86179 Lys TTT cttagcgtga tcgttgtttt0 0 83.80 62.7821.02 Both
scaffold_47 150 12164456 12164528 Lys TTT cctagcaagg tcaggttttt0 0 83.80 62.7821.02 Both
scaffold_71 145 10571988 10572060 Lys TTT accctcgtga gactgtcact0 0 83.80 62.7821.02 Both
scaffold_71 158 10576424 10576352 Lys TTT ttcttttgga ggaactcttt0 0 83.80 62.7821.02 Both
scaffold_143 156 440980 440908 Lys TTT ggatgtagag ttattctctt0 0 84.36 63.3621.00 Both
scaffold_143 175 94824 94752 Lys TTT ggatgtagag ttatcctcat0 0 84.36 63.3621.00 Both
scaffold_143 58 1019782 1019854 Lys TTT gagtgtagag ttatcctcat0 0 84.36 63.3621.00 Both
 
scaffold_135 80 149644 149572 Met CAT ttttggcttg aaaggggtct0 0 42.48 34.507.98 Both
scaffold_127 66 1797274 1797202 Met CAT ctgcaaccta ggtgcctttt0 0 47.30 41.415.89 Both
scaffold_49 6 496550 496621 Met CAT aactccaggc cggtacgttt0 0 53.14 31.9421.20 Both
scaffold_139 59 1629440 1629511 Met CAT acaaccaagg ttttagtaga0 0 54.39 32.1422.25 Both
scaffold_204 19 371973 372044 Met CAT acaaccaagg ttttaatgga0 0 54.39 36.0418.35 Both
scaffold_139 72 1042187 1042104 Met CAT aggccccaat ctctattttc0 0 57.00 30.4026.60 Both
scaffold_182 17 215715 215644 Met CAT acaagcaagg ttttagtgga0 0 57.83 35.1322.70 Eufind
scaffold_139 64 1308017 1307946 Met CAT ataaccaagg ttttagtgga0 0 58.13 34.7523.38 Both
scaffold_265 3 66861 66933 Met CAT tttcccgggt gttggtcttt0 0 59.02 46.9012.12 Both
scaffold_182 19 82246 82175 Met CAT acaaccaagg ttttagtgga0 0 59.31 35.9323.38 Both
scaffold_182 18 145180 145109 Met CAT acaagcaagg ttttactgga0 0 60.79 35.5225.27 Eufind
scaffold_139 65 1263506 1263435 Met CAT acaaccaagg ttttagtgga0 0 61.05 33.0428.01 tRNAscan
scaffold_139 55 1195322 1195393 Met CAT acaaccaagg ttttagtgga0 0 62.68 39.9822.70 Eufind
scaffold_182 12 573128 573057 Met CAT acaaccaagg ttttagtgga0 0 62.93 41.1421.79 Eufind
scaffold_108 124 2902711 2902782 Met CAT gtaactgtga tgaacttttt0 0 63.35 32.5530.80 Both
scaffold_34 428 18954920 18954848 Met CAT aacattttat caggtggagg0 0 63.48 52.9410.54 Both
scaffold_182 15 339963 339892 Met CAT acaaccaagg ttttagtgga0 0 64.12 36.1128.01 Both
scaffold_204 21 311694 311623 Met CAT gcaatcaagg ttttagtgga0 0 64.93 39.7825.15 Eufind
scaffold_5 1270 91160722 91160650 Met CAT tgaacacagt gtcttttctc0 0 65.58 50.4715.11 Eufind
scaffold_139 54 1137083 1137154 Met CAT acagccaagg ttttagtgga0 0 65.86 37.8528.01 Both
scaffold_139 69 1107025 1106954 Met CAT acagccaagg ttttagtgga0 0 65.86 37.8528.01 Both
scaffold_139 71 1045349 1045278 Met CAT acagtcaagg ttttagtgga0 0 67.60 39.5928.01 Both
scaffold_139 73 1017948 1017877 Met CAT acagccaagg ttttagtgga0 0 67.60 39.5928.01 Both
scaffold_139 76 911935 911864 Met CAT acaaccaagg ttttagtgga0 0 67.60 39.5928.01 Both
scaffold_204 22 281742 281671 Met CAT acagccaagg ttttagtgga0 0 67.60 39.5928.01 Both
scaffold_108 130 3232824 3232895 Met CAT catgccagct tttgttttac0 0 68.98 40.9628.02 Both
scaffold_108 173 2893660 2893589 Met CAT acaatgaggg ttttgatatc0 0 68.98 40.9628.02 Both
scaffold_108 235 2097639 2097568 Met CAT tttaacagct acgttttttt0 0 68.98 40.9628.02 Both
scaffold_108 69 1994318 1994389 Met CAT aaccccgtgg gggcttttat0 0 68.98 40.9628.02 Both
scaffold_139 75 961838 961767 Met CAT ataatcaaga ttttagtgga0 0 68.98 40.9628.02 Both
scaffold_182 5 283337 283408 Met CAT acaaccaagg ttttagtgga0 0 68.98 40.9628.02 Both
scaffold_33 18 2195341 2195412 Met CAT tttaccaggt tctgggagtt0 0 68.98 40.9628.02 Both
scaffold_44 6 226941 227012 Met CAT accatcccga gtttctttcc0 0 68.98 40.9628.02 Both
scaffold_44 784 259143 259072 Met CAT caacacaggg gctttttttt0 0 68.98 40.9628.02 Both
scaffold_135 59 403160 403088 Met CAT tccagagagt gtagaagttt0 0 73.35 55.0018.35 Both
scaffold_108 245 887777 887705 Met CAT ttgtataagt agacggtttt0 0 73.48 52.2721.21 Both
scaffold_139 77 908715 908643 Met CAT tgattcctgt ctctgttttc0 0 75.27 52.3522.92 Both
scaffold_204 23 278541 278469 Met CAT tgattcctgt ctctgttttc0 0 75.27 52.3522.92 Both
scaffold_108 255 583420 583348 Met CAT gtgtaggggt cgatagtttt0 0 75.63 52.7122.92 Both
scaffold_135 28 584186 584258 Met CAT agggacagtt gcggggtttt0 0 76.58 56.4420.14 Both
scaffold_135 45 596427 596355 Met CAT tcttctgtct gtagcgtttt0 0 76.58 56.4420.14 Both
scaffold_204 4 134699 134771 Met CAT aaaccggact gtcttttctc0 0 76.99 55.7721.22 Both
scaffold_8 1488 69175276 69175204 Met CAT agctgtaggt caatactttt0 0 77.15 56.7920.36 Both
scaffold_139 74 1014633 1014561 Met CAT taccctcggt ctgtattttc0 0 77.36 56.1421.22 Both
scaffold_135 74 194960 194888 Met CAT tttagcgtgt ctgagagctt0 0 77.40 56.1921.21 Both
scaffold_135 55 436132 436060 Met CAT ttaaacaggt acgaaggttt0 0 78.13 55.2122.92 Both
scaffold_139 70 1103644 1103572 Met CAT ggagcccagt ctctcttttc0 0 78.21 55.6422.57 Both
scaffold_204 24 217322 217250 Met CAT gaacctagcg tgctgttttc0 0 78.21 55.6422.57 Both
scaffold_204 25 171224 171152 Met CAT tgattccaat cactgttttc0 0 78.21 55.6422.57 Both
scaffold_57 34 5546436 5546508 Met CAT ccacccagga tccagctctt0 0 79.85 59.4920.36 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
scaffold_108 154 3342900 3342828 Phe AAA ccacaagtaa aactggtcgt0 0 56.10 45.6310.47 Eufind
scaffold_143 115 1157707 1157635 Phe GAA cacccaggca attttgtttg0 0 54.33 45.958.38 Both
scaffold_21 829 17433989 17433917 Phe GAA tatgggcgga gaagaggatc0 0 56.62 39.5617.06 tRNAscan
scaffold_108 2 55065 55137 Phe GAA ttccaaaaaa acttacttcg0 0 57.19 40.4816.71 Eufind
scaffold_135 82 128029 127957 Phe GAA ctcccaagca gttttgttga0 0 57.30 50.416.89 Eufind
scaffold_18 206 14033651 14033723 Phe GAA aagtcaggta gcttcagtta0 0 57.99 44.0113.98 Both
scaffold_143 30 710672 710744 Phe GAA tttcatagta acttacgtcg0 0 62.75 54.448.31 Both
scaffold_135 85 90266 90194 Phe GAA ccactcggct gttctgttga0 0 62.97 54.658.32 Eufind
scaffold_2 2413 7816921 7816849 Phe GAA tacaacagta attgtttgga0 0 66.94 52.9214.02 Both
scaffold_143 45 906361 906433 Phe GAA tttcgaaata acacacttag0 0 70.29 48.1222.17 Both
scaffold_143 98 1500007 1499935 Phe GAA cacaccggga gttctgttga0 0 71.01 59.4111.60 Both
scaffold_108 222 2227257 2227185 Phe GAA ccagtagcgg accgagaaaa0 0 76.23 61.2714.96 Both
scaffold_264 9 218848 218776 Phe GAA ttccgaaata acttacttcg0 0 76.38 60.7615.62 Both
scaffold_143 153 463867 463795 Phe GAA tttcgaaaga acttacttcg0 0 76.73 59.6817.05 Both
scaffold_311 16 3141 3069 Phe GAA acacagggca gttctgttga0 0 79.22 61.3217.90 Both
scaffold_143 105 1381094 1381022 Phe GAA gcacacggca gttctgttga0 0 81.62 60.0121.61 Both
scaffold_143 112 1270509 1270437 Phe GAA gcagccagga gttccgttgg0 0 81.70 61.9419.76 Both
scaffold_108 253 617236 617164 Phe GAA ccccgaggga gttctgttta0 0 82.45 60.8421.61 Both
scaffold_108 265 463380 463308 Phe GAA tttccgcgga actggcttcg0 0 82.45 60.8421.61 Both
scaffold_108 32 465840 465912 Phe GAA tttccgcgga actggcttcg0 0 82.45 60.8421.61 Both
scaffold_135 53 462938 462866 Phe GAA tttccacaca atttctttta0 0 82.45 60.8421.61 Both
scaffold_135 58 414833 414761 Phe GAA gcaaccggca gttttgttgc0 0 82.45 60.8421.61 Both
scaffold_135 72 220282 220210 Phe GAA cactcaggca ggttaattta0 0 82.45 60.8421.61 Both
scaffold_311 8 124243 124171 Phe GAA gcacacggca gttctgttga0 0 82.45 60.8421.61 Both
scaffold_71 146 10575246 10575318 Phe GAA atttgtgctt gggtttttat0 0 82.45 60.8421.61 Both
scaffold_143 161 269923 269851 Phe GAA tttcaaaata actcacttag0 0 82.59 59.4423.15 Both
scaffold_143 172 119467 119395 Phe GAA tttcaaagta actcacttcg0 0 82.59 59.4423.15 Both
scaffold_143 56 994949 995021 Phe GAA tttcaaagta actcacttcg0 0 82.59 59.4423.15 Both
scaffold_11 283 10991184 10991256 Phe GAA gtagaaacgc taccctttta0 0 84.19 62.5821.61 Both
scaffold_135 44 608768 608696 Phe GAA tgtgggcgga gacgtaaatc0 0 84.19 62.5821.61 Both
scaffold_153 21 1085823 1085751 Phe GAA ccaccgcccg aacttttggg0 0 84.19 62.5821.61 Both
scaffold_18 1173 13870045 13869973 Phe GAA atttgccctg accttttgga0 0 84.19 62.5821.61 Both
scaffold_84 28 1856232 1856304 Phe GAA gatctcggtc agcggttgcc0 0 84.19 62.5821.61 Both
 
scaffold_37 22 1936732 1936803 Pro AGG aaggatgagt ttgtctgttc0 0 39.77 29.7010.07 Both
scaffold_53 120 5437649 5437720 Pro AGG taatctgtgt gttgtttctg0 0 44.45 26.7017.75 Both
scaffold_318 12 49734 49663 Pro AGG gaaactaagt cttttggaac0 0 64.35 50.1414.21 Both
scaffold_311 11 71681 71610 Pro AGG gaaactaagt cttttggaac0 0 66.98 51.0615.92 Both
scaffold_118 35 1718534 1718605 Pro AGG tttttgccgt tttctttggc0 0 69.59 47.5322.06 Both
scaffold_135 78 162089 162018 Pro AGG taagccaggt gttttaaact0 0 70.27 52.0218.25 Both
scaffold_118 33 1713360 1713431 Pro AGG gctatcgtgt tgttttcaac0 0 75.92 53.8522.07 Both
scaffold_118 34 1716196 1716267 Pro AGG gtttgcgtgt ttcgttttct0 0 75.92 53.8522.07 Both
scaffold_135 62 365519 365448 Pro AGG gaaaccatgt gttttgaaaa0 0 75.92 53.8522.07 Both
scaffold_135 68 290306 290235 Pro AGG aaaaccgtgc gttttggaaa0 0 75.92 53.8522.07 Both
scaffold_143 107 1332206 1332135 Pro AGG gaaaccaagt attttggaac0 0 75.92 53.8522.07 Both
scaffold_33 298 27469413 27469484 Pro AGG cacacacacg tttttttctc0 0 75.92 53.8522.07 Both
scaffold_44 796 83511 83440 Pro AGG ctaaccagat atttttcatt0 0 75.92 53.8522.07 Both
scaffold_5 1128 98298688 98298759 Pro AGG agctaccagc tgtttttcat0 0 75.92 53.8522.07 Both
scaffold_79 131 1215287 1215216 Pro AGG tggagagagc acctttttct0 0 75.92 53.8522.07 Both
scaffold_996 1 1069 1140 Pro AGG cacacacacg tttttttctc0 0 75.92 53.8522.07 Both
scaffold_47 398 12273163 12273092 Pro CGG tctacacgtc tgttttgctt0 0 76.52 54.4622.06 Both
scaffold_53 321 12480656 12480585 Pro CGG ttgcctccgt tcgttcggtt0 0 76.52 54.4622.06 Both
scaffold_996 3 1950 1879 Pro CGG tttcaggagc agggtttttc0 0 76.52 54.4622.06 Both
scaffold_64 274 2721967 2721896 Pro TGG atgggatgtt agttttaact0 0 49.81 43.166.65 Both
scaffold_143 88 1526405 1526476 Pro TGG ataaagtgct ttttcttctt0 0 56.37 44.9511.42 Eufind
scaffold_54 24 3681486 3681557 Pro TGG gtcaggacct tgctttacac0 0 56.66 47.279.39 Eufind
scaffold_311 3 39095 39166 Pro TGG ctaaggtggt ctgttttctt0 0 57.00 46.4010.60 Eufind
scaffold_318 1 18257 18328 Pro TGG acaaggtgct cagttttctt0 0 58.11 43.2614.85 Eufind
scaffold_90 66 2947689 2947618 Pro TGG caacaggagc agggtttttc0 0 64.35 47.0617.29 Eufind
scaffold_143 69 1226753 1226824 Pro TGG gtagcgtggt acgttttctt0 0 65.00 48.6716.33 Both
scaffold_143 75 1303663 1303734 Pro TGG ctagggtggc ctgttttctt0 0 69.72 47.8121.91 Both
scaffold_135 7 111337 111408 Pro TGG ataacgtggt ttgttttctt0 0 73.64 51.7321.91 Both
scaffold_143 64 1149602 1149673 Pro TGG atgacgtagt gagttttctt0 0 73.64 51.7321.91 Both
scaffold_1 1174 104308547 104308618 Pro TGG cttagcgtct gctttttaac0 0 76.15 54.0922.06 Both
scaffold_118 57 1530407 1530336 Pro TGG caggaacggt agttttttac0 0 76.15 54.0922.06 Both
scaffold_79 12 1214917 1214988 Pro TGG ctaagcagct ctcttttgcc0 0 76.24 54.2322.01 Both
scaffold_118 54 1700368 1700297 Pro TGG acagaggcct tgttttacac0 0 78.87 58.5220.35 Both
 
scaffold_118 40 2638333 2638248 SeC(e) TCA ggaaaatacc aactagtatc0 0 51.09 0.000.00 Eufind
scaffold_24 29 5867042 5867127 SeC(e) TCA acaacaacat gtcagactag0 0 51.19 0.000.00 Eufind
scaffold_174 4 257426 257341 SeC(e) TCA cggaaatatc gactggtagc0 0 53.63 0.000.00 Eufind
scaffold_246 3 124459 124374 SeC(e) TCA tggaaatatc gaccagtagc0 0 56.22 0.000.00 Eufind
scaffold_2 1008 92981839 92981924 SeC(e) TCA ctttatgttt gacagattca0 0 59.61 0.000.00 Eufind
scaffold_4 2471 4598576 4598491 SeC(e) TCA tctttgtttc gagaggctgt0 0 75.99 0.000.00 Eufind
 
scaffold_0 367 25344936 25345006 SeC TCA gcgatgagga cctcaagcac0 0 50.11 0.000.00 Both
scaffold_15 233 16978347 16978417 SeC TCA tttttagggg ccttatgcac0 0 50.22 0.000.00 Eufind
scaffold_13 1418 15793059 15792989 SeC TCA ctaattgggg cttcatgtgc0 0 51.54 0.000.00 Eufind
scaffold_1 1720 76211906 76211836 SeC TCA agtaacggag cctcatgtac0 0 51.61 0.000.00 Eufind
scaffold_26 972 6321914 6321843 SeC TCA tgcctggagg cctcatgggc0 0 51.78 0.000.00 Both
scaffold_7 798 64994798 64994868 SeC TCA gagagatgag cctcatgccc0 0 51.82 0.000.00 Eufind
scaffold_6 520 37440337 37440407 SeC TCA ggaggatggg cctcatgtgc0 0 51.90 0.000.00 Eufind
scaffold_108 185 2741750 2741678 SeC TCA atagttggaa cttaaaactt0 0 51.96 0.000.00 Both
scaffold_20 422 31720226 31720296 SeC TCA ttaaaaaatg ccacacgtgc0 0 51.99 0.000.00 Eufind
scaffold_20 546 42165026 42165096 SeC TCA atcttataag ccttatgcac0 0 53.22 0.000.00 Both
scaffold_33 306 26681044 26680974 SeC TCA gataagaagg cctcatgatg0 0 53.62 0.000.00 Eufind
scaffold_0 1699 118812771 118812701 SeC TCA tgttaacagg tctcatatgt0 0 54.55 0.000.00 Eufind
scaffold_6 1953 22783577 22783507 SeC TCA cctggaggag cctcgtgaac0 0 54.88 0.000.00 Eufind
scaffold_53 368 9667674 9667604 SeC TCA aggggatgag cctcatgtgc0 0 56.36 0.000.00 Both
scaffold_3 1116 98074736 98074806 SeC TCA tactttgggg cctcatatac0 0 56.64 0.000.00 Eufind
scaffold_29 332 20220521 20220591 SeC TCA tgtttaggag gctcgagcac0 0 57.06 0.000.00 Eufind
scaffold_15 1051 32555369 32555299 SeC TCA caagctggga ccttatacac0 0 57.14 0.000.00 Eufind
scaffold_25 889 11139514 11139444 SeC TCA acatatggag cctcatgcac0 0 58.72 0.000.00 Eufind
 
scaffold_25 461 26626818 26626889 Ser ACT accccaaggc catgaaagaa0 0 27.52 22.075.45 Both
scaffold_27 328 19949066 19949139 Ser ACT tagtggtggg ccccggaaga0 0 43.93 29.7814.15 Both
scaffold_8 590 47365013 47365086 Ser ACT ttgctgatgt atatgattta0 0 47.82 31.0716.75 Both
scaffold_70 441 6140009 6139928 Ser AGA cttcgtggtc tctagaattt0 0 54.68 37.5017.18 Both
scaffold_264 10 215365 215285 Ser AGA gaaagcatct gactatttgg0 0 57.51 32.8924.62 Eufind
scaffold_143 57 1001931 1002012 Ser AGA gaaagcagct gctctttgga0 0 58.52 37.4821.04 Both
scaffold_40 408 4903169 4903088 Ser AGA taaggaaaga cgttgtttgg0 0 59.31 34.7224.59 Both
scaffold_143 32 716978 717059 Ser AGA gaaggcagct aactgtttgg0 0 61.15 34.5226.63 Eufind
scaffold_108 4 61986 62067 Ser AGA gaagggagct gactatttgg0 0 63.17 31.8431.33 Both
scaffold_143 155 457049 456968 Ser AGA taaggcagct gactgtttgg0 0 71.16 49.7721.39 Both
scaffold_108 256 582266 582185 Ser AGA gcgattaact gagtagctat0 0 71.16 52.8618.30 Both
scaffold_108 11 162775 162855 Ser AGA tgattcagct gaacaattgg0 0 71.91 41.7230.19 Both
scaffold_143 47 913290 913371 Ser AGA taaggcagct gactgtttcg0 0 75.19 47.4227.77 Both
scaffold_2115 1 2450 2531 Ser AGA taaggcagct gaccatttgg0 0 75.89 44.7831.11 Both
scaffold_143 174 112602 112521 Ser AGA taaggcagct tactatttgg0 0 78.19 50.0728.12 Both
scaffold_108 26 366362 366443 Ser AGA ggggccagct ggctagttgg0 0 84.20 56.0828.12 Both
scaffold_108 28 391516 391597 Ser AGA taaattaact ctatattttg0 0 84.20 56.0828.12 Both
scaffold_44 779 552620 552539 Ser AGA ctttaaaact gactatttgg0 0 84.25 57.6526.60 Both
scaffold_108 19 278038 278119 Ser AGA tgagtcagct gaatagttgg0 0 84.74 54.2230.52 Both
scaffold_108 206 2383705 2383624 Ser AGA tctctctcat atcctgtcct0 0 86.37 53.6232.75 Both
scaffold_108 165 2981781 2981700 Ser AGA ctgtgccgct aagcgctttt0 0 86.84 55.7331.11 Both
scaffold_108 168 2955821 2955740 Ser AGA tgtcctccag gtcctttact0 0 86.84 55.7331.11 Both
scaffold_108 86 2366064 2366145 Ser AGA tttcctccag ggcccttcct0 0 86.84 55.7331.11 Both
scaffold_108 166 2971451 2971370 Ser AGA tggagcgtga agtttctttt0 0 88.01 56.9031.11 Both
scaffold_44 788 229393 229312 Ser AGA gtatgcagca agtgcgaact0 0 88.01 56.9031.11 Both
scaffold_47 158 12262598 12262679 Ser AGA aacagcccgt cttcgttgga0 0 88.01 56.9031.11 Both
scaffold_47 396 12276964 12276883 Ser AGA gtaggcgcga agttgttttt0 0 88.01 56.9031.11 Both
scaffold_8 1821 42147175 42147094 Ser AGA gctagcagaa ggaatgtgaa0 0 88.01 56.9031.11 Both
scaffold_108 163 2999397 2999316 Ser AGA aattacgtat ggcatttttc0 0 88.26 57.1531.11 Both
scaffold_108 127 2941755 2941836 Ser AGA cttgtgctat atcctgtcct0 0 88.50 57.3931.11 Both
scaffold_108 31 435805 435886 Ser AGA ggaagcagct ggctagttgg0 0 88.50 57.3931.11 Both
scaffold_108 33 471879 471960 Ser AGA gcagccagct tactgtttgg0 0 88.50 57.3931.11 Both
scaffold_2 487 45553763 45553844 Ser CGA ggttttggga gcggcgcttt0 0 89.14 63.5025.64 Both
scaffold_108 78 2221277 2221358 Ser CGA agtttccgga atccactttt0 0 90.62 59.1531.47 Both
scaffold_139 85 687558 687477 Ser CGA ccaccatcag ttcgtctttt0 0 90.62 59.1531.47 Both
scaffold_47 402 12187812 12187731 Ser CGA gtcgcacgtg tcagtgcttt0 0 92.09 62.9129.18 Both
scaffold_12 104 6666297 6666365 Ser GCT ggtggcgtag cttcttggaa0 0 20.02 14.895.13 Both
scaffold_18 796 42251989 42251920 Ser GCT catatattaa ctccttggaa0 0 20.04 11.348.70 Both
scaffold_25 532 32148372 32148442 Ser GCT agccctagaa tccttggaaa0 0 20.26 14.975.29 Both
scaffold_13 47 3475680 3475748 Ser GCT gtccaggaaa ctccttggaa0 0 20.33 14.845.49 Both
scaffold_15 1154 26165556 26165485 Ser GCT tgtgtgtgga tccttggaaa0 0 20.88 14.386.50 Both
scaffold_10 650 52137352 52137420 Ser GCT atactgcaaa ctccttggaa0 0 21.16 13.277.89 Both
scaffold_56 380 6439699 6439631 Ser GCT gttctggaaa ctccttggaa0 0 21.27 16.075.20 Both
scaffold_0 2837 13993240 13993174 Ser GCT tgtaatcttt ctccttggaa0 0 21.66 10.2211.44 Both
scaffold_29 474 30136824 30136887 Ser GCT ttggagtcct ctccttggaa0 0 22.10 12.539.57 Both
scaffold_81 113 3675199 3675131 Ser GCT gctgtggaaa ctccttggaa0 0 22.11 15.786.33 Both
scaffold_8 258 21559027 21559095 Ser GCT actttgcaaa ctccttggaa0 0 22.49 11.4811.01 Both
scaffold_1 5 908333 908404 Ser GCT tagtctggaa tacttggaaa0 0 23.01 14.748.27 Both
scaffold_39 251 15075992 15076060 Ser GCT ttccaggaaa ctccttggaa0 0 23.35 17.585.77 Both
scaffold_62 62 6901878 6901948 Ser GCT ctcatagcga ctccttggaa0 0 24.58 17.117.47 Both
scaffold_39 346 19720177 19720245 Ser GCT tgctaggaaa ctccttggaa0 0 24.85 14.2310.62 Both
scaffold_10 1139 46728930 46728851 Ser GCT gctatatact actctatggg0 0 25.01 16.508.51 Both
scaffold_39 518 17691587 17691519 Ser GCT taataggaaa cttcttggaa0 0 25.01 16.918.10 Both
scaffold_20 794 27396566 27396499 Ser GCT tttctgacct ccttagaaac0 0 25.25 10.6114.64 Both
scaffold_59 266 11018058 11017982 Ser GCT cgagtaaaga tggtagcaag0 0 25.53 13.2012.33 Both
scaffold_2 1928 55719711 55719643 Ser GCT agtgcagaaa ctcctcggaa0 0 25.78 15.1510.63 Both
scaffold_2 968 89801708 89801776 Ser GCT agttcagaaa ctccttggaa0 0 26.22 12.5213.70 Both
scaffold_0 1701 118641712 118641644 Ser GCT tttatggaaa ctccttagaa0 0 26.54 20.416.13 Both
scaffold_22 743 32794100 32794030 Ser GCT tgcttcagaa ttcttggaaa0 0 27.15 12.6814.47 Both
scaffold_30 437 21185684 21185616 Ser GCT taggtggaaa ctccttggaa0 0 27.71 11.2116.50 Both
scaffold_297 1 44460 44528 Ser GCT gatgaggaaa cttcttggaa0 0 28.44 14.7413.70 Both
scaffold_74 30 2392934 2393004 Ser GCT tggctagaac tacttgaaaa0 0 28.53 17.4611.07 Both
scaffold_3 719 62689130 62689199 Ser GCT ttggttaatc cttggaaact0 0 28.94 17.3011.64 Both
scaffold_44 246 12045621 12045690 Ser GCT ttaaaggagc ccacgggaga0 0 29.54 21.567.98 Both
scaffold_90 52 4901673 4901599 Ser GCT taggtattga cactggagaa0 0 32.80 14.2018.60 Both
scaffold_6 765 57762667 57762735 Ser GCT ttaatggtca ctccttggaa0 0 32.83 18.8014.03 Both
scaffold_49 405 15678291 15678218 Ser GCT attggggagt cctgggaaga0 0 37.69 28.189.51 Both
scaffold_5 248 20225779 20225852 Ser GCT gcaacagagt ccttagaaga0 0 39.33 29.359.98 Both
scaffold_9 1805 30444377 30444300 Ser GCT ctgaaggaaa tgggaaaaag0 0 41.76 29.6912.07 Both
scaffold_8 1229 83237972 83237900 Ser GCT tacataagga gtgtgggaga0 0 45.06 29.9415.12 Both
scaffold_4 1111 86116638 86116709 Ser GCT tatagagaaa ctgtgggaga0 0 48.15 37.1610.99 Both
scaffold_108 8 135024 135105 Ser GCT cttaactcct ttcttccttt0 0 52.36 38.0914.27 Both
scaffold_108 18 257467 257548 Ser GCT gttaactcct gttctttctt0 0 54.22 43.1011.12 Both
scaffold_19 816 30751506 30751425 Ser GCT agggtttcca ttccttcctt0 0 54.29 41.1313.16 Both
scaffold_429 1 204 277 Ser GCT ttaatctgcg ggccttaagt0 0 55.47 46.788.69 Both
scaffold_0 1579 125916375 125916293 Ser GCT tgaagctcct ttccttcctt0 0 56.21 46.559.66 Eufind
scaffold_84 13 1031169 1031239 Ser GCT cccatacagg cctcattgca0 0 56.85 45.5111.34 Eufind
scaffold_108 14 193496 193577 Ser GCT tttttttctt ttctttcctt0 0 57.50 49.947.56 Eufind
scaffold_143 40 807428 807509 Ser GCT attaactcct ttctttcttt0 0 57.55 47.3310.22 Eufind
scaffold_4 762 53569385 53569466 Ser GCT tagtgttgtg atatcagttc0 0 60.71 42.9117.80 Eufind
scaffold_108 22 290452 290533 Ser GCT ctttattcct ttccttcctt0 0 65.25 44.3020.95 Both
scaffold_108 12 179284 179365 Ser GCT ctttattcct ttccttcctt0 0 65.40 40.8424.56 Eufind
scaffold_2 1009 92981945 92982026 Ser GCT cacctttgta ttctgcaggt0 0 65.74 49.7016.04 Both
scaffold_143 177 83231 83150 Ser GCT ctttattcct ttcctttccg0 0 65.94 41.6224.32 Both
scaffold_143 157 421163 421082 Ser GCT ctttattcct tttcttcttt0 0 66.63 49.4217.21 Both
scaffold_143 53 969692 969773 Ser GCT ctttattcct tttcttcttt0 0 66.83 44.1522.68 Both
scaffold_108 275 318354 318273 Ser GCT cattattcct cttccttacc0 0 68.69 40.4728.22 Both
scaffold_143 147 610357 610276 Ser GCT ctttattcct tttcttcttt0 0 69.08 47.5821.50 Both
scaffold_143 179 57003 56922 Ser GCT ctttatcctt gttcttcttt0 0 73.14 50.2322.91 Both
scaffold_143 143 662367 662286 Ser GCT ctttattcct ttccttcctt0 0 73.74 51.5122.23 Both
scaffold_143 35 745505 745586 Ser GCT ctttattcct ttccttcctt0 0 76.33 50.5025.83 Both
scaffold_412 6 92427 92346 Ser GCT ctttatccgt gttcttcttt0 0 77.84 51.6026.24 Both
scaffold_143 51 942454 942535 Ser GCT ctttattcct ttcctttcct0 0 78.03 47.5530.48 Both
scaffold_139 40 716718 716799 Ser GCT agcagaagca ttccttcgtt0 0 78.84 56.6922.15 Both
scaffold_264 12 179537 179456 Ser GCT ttttattcct tttcttcttt0 0 79.02 53.6925.33 Both
scaffold_264 13 171531 171450 Ser GCT ttttattcct tttcttcttt0 0 79.02 53.6925.33 Both
scaffold_143 38 773957 774038 Ser GCT ctttattcct tttcttcttt0 0 80.37 52.0628.31 Both
scaffold_108 6 114734 114815 Ser GCT ctttattcct tttcttcttt0 0 80.38 48.8731.51 Both
scaffold_143 166 227598 227517 Ser GCT ctttattcct tttcttctta0 0 80.63 52.3228.31 Both
scaffold_108 160 3267394 3267313 Ser GCT ttcttcgtgg atagtggatc0 0 83.02 55.4527.57 Both
scaffold_108 29 400532 400613 Ser GCT atcagttcct ttctttcctt0 0 83.33 55.7527.58 Both
scaffold_44 13 380643 380724 Ser GCT acaccagaga tttcttcctt0 0 83.64 53.2630.38 Both
scaffold_13 524 31911878 31911959 Ser GCT gttactaaga ttcctttctt0 0 84.33 53.8430.49 Both
scaffold_44 11 249849 249930 Ser GCT tcagcgggca ttccatggtt0 0 85.34 57.7727.57 Both
scaffold_47 155 12240547 12240628 Ser GCT tcttcccata tcccgcaggt0 0 85.34 57.7727.57 Both
scaffold_64 189 10253082 10253001 Ser GCT aggcttctgg aaggaagttt0 0 85.34 57.7727.57 Both
scaffold_71 238 3153419 3153338 Ser GCT cactgtaggg gtcgcgtttt0 0 85.83 58.2527.58 Both
scaffold_108 242 1313243 1313162 Ser GCT gcttctgtgt gctagctaaa0 0 88.12 59.2228.90 Both
scaffold_108 252 677155 677074 Ser GCT aacagtacct gctgcttcag0 0 88.12 59.2228.90 Both
scaffold_108 49 748331 748412 Ser GCT gggtccgccg gcttgttgag0 0 88.12 59.2228.90 Both
scaffold_122 8 908911 908992 Ser GCT tcccgtactt gatagcaaag0 0 88.12 59.2228.90 Both
scaffold_139 80 764472 764391 Ser GCT tttgcatcgt ggtaagtctt0 0 88.12 59.2228.90 Both
scaffold_44 8 241494 241574 Ser TGA nnnnnnnnnn cgacagggct0 0 58.26 40.3317.93 Both
scaffold_27 986 929159 929078 Ser TGA ggtttctgtg gaagcgggtt0 0 62.97 48.4914.48 Both
scaffold_108 128 2966645 2966726 Ser TGA ccagtatctg gtgtagtttt0 0 80.80 55.4525.35 Both
scaffold_135 26 490889 490970 Ser TGA agagtcaagt gcttagtttt0 0 85.54 53.5332.01 Both
scaffold_108 87 2389514 2389595 Ser TGA caaacgttaa gttttaccat0 0 85.96 56.1729.79 Both
scaffold_108 169 2936680 2936599 Ser TGA tgaacggtga gttttaccac0 0 86.85 55.7431.11 Both
scaffold_10 612 49435261 49435342 Ser TGA gattctcgtg gaagcggatg0 0 90.86 62.3328.53 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
scaffold_34 570 10412168 10412098 Sup TTA ggccagtggg cctcatcctc0 0 53.99 43.0810.91 Both
scaffold_264 20 47825 47753 Sup TTA cagtaggaag ttatcctcac0 0 63.06 55.577.49 Both
 
scaffold_31 709 8394909 8394838 Thr AGT atttgaagaa tgtatcgttt0 0 39.14 28.4210.72 Both
scaffold_10 1128 48422709 48422636 Thr AGT aatactagtg ctgctatatt0 0 55.74 47.997.75 Eufind
scaffold_32 585 11410262 11410189 Thr AGT atagggtgtt ttatagaaac0 0 70.48 53.2417.24 Both
scaffold_43 164 9657817 9657890 Thr AGT ataggcatga ggccctcaag0 0 76.86 60.5216.34 Both
scaffold_108 36 535101 535174 Thr AGT ctgttgaggg ctctacttgg0 0 79.46 59.6519.81 Both
scaffold_139 84 711033 710960 Thr AGT cctcagaagg tcgttgttaa0 0 80.30 60.8519.45 Both
scaffold_47 156 12240843 12240916 Thr AGT agcttcagcg ccgtcttacc0 0 81.12 61.5219.60 Both
scaffold_47 401 12188355 12188282 Thr AGT gtctccggct gggcctattt0 0 81.60 62.0019.60 Both
scaffold_108 225 2176938 2176865 Thr AGT cttactgtga atatttcttg0 0 82.51 62.1620.35 Both
scaffold_44 4 110183 110256 Thr AGT gtgccgtgtt tttgcggttt0 0 83.05 63.4919.56 Both
scaffold_43 432 9663336 9663263 Thr AGT tcctacgggc ggtctctagt0 0 84.06 64.4519.61 Both
scaffold_47 397 12276583 12276510 Thr AGT tggcagcgtc ttattcagcg0 0 84.06 64.4519.61 Both
scaffold_108 260 511941 511868 Thr AGT ttgccgtggg ctctggctct0 0 84.35 64.5519.80 Both
scaffold_108 76 2213307 2213380 Thr AGT cctcagggct atgttttgta0 0 85.27 65.7119.56 Both
scaffold_108 53 880423 880496 Thr CGT ttgttcgtgt taaggttttc0 0 52.33 32.3120.02 Both
scaffold_4 1751 53803191 53803121 Thr CGT attagtggga cctcatgcgc0 0 55.93 43.1712.76 Eufind
scaffold_102 102 2197089 2197019 Thr CGT agccaatgcc gcatgggtgg0 0 60.62 49.1811.44 Eufind
scaffold_108 94 2454699 2454771 Thr CGT tcctcgcgaa caggtcatta0 0 75.91 55.0220.89 Both
scaffold_11 1144 51594431 51594358 Thr CGT ctgagaacat taacgttttc0 0 76.48 59.4817.00 Both
scaffold_108 177 2869036 2868964 Thr CGT ttcaggaaaa taacttgctg0 0 77.58 55.6621.92 Both
scaffold_31 17 1071674 1071745 Thr CGT tcggctgtca aggacttgag0 0 79.77 59.8819.89 Both
scaffold_53 642 608186 608115 Thr CGT ttctaacgca agcgtcggct0 0 80.42 57.5722.85 Both
scaffold_108 54 883071 883144 Thr CGT ttgttcgtgt taaggttttc0 0 81.51 60.8120.70 Both
scaffold_108 47 687244 687317 Thr CGT ccgcgccacc ttttcgtcaa0 0 81.52 62.0719.45 Both
scaffold_264 15 140960 140879 Thr GGT cttaactccc tcgttctttt0 0 55.93 37.4218.51 Both
scaffold_28 495 29339035 29339108 Thr TGT atcttagtct atttcagggc0 0 44.02 33.2410.78 Both
scaffold_104 51 2730273 2730201 Thr TGT gtctagtgaa tagctcctta0 0 49.10 41.197.91 Both
scaffold_8 278 23068334 23068405 Thr TGT tatagggtct ctctatcttc0 0 49.53 33.1316.40 Both
scaffold_0 168 10254320 10254390 Thr TGT ttaccagagg cttaacgcac0 0 54.36 47.996.37 Both
scaffold_43 74 4464245 4464317 Thr TGT tatggttgag agccttggct0 0 59.85 46.3713.48 Both
scaffold_264 2 68948 69021 Thr TGT catctgtctg taacattttc0 0 68.82 58.6410.18 Eufind
scaffold_143 1 2362 2435 Thr TGT cacctgtgtg tgactttttc0 0 71.75 57.0814.67 Both
scaffold_108 58 922630 922703 Thr TGT caaacatatg ctgtttttgc0 0 75.06 54.3520.71 Both
scaffold_135 24 441350 441423 Thr TGT cgcgagcgtg cagtttttcc0 0 77.12 59.9917.13 Both
scaffold_143 8 171730 171803 Thr TGT cacctgtgtg tgacattttc0 0 78.42 57.7720.65 Both
scaffold_108 42 597010 597083 Thr TGT atacaccgtg tggtattttt0 0 78.70 57.9920.71 Both
scaffold_118 55 1532989 1532917 Thr TGT caccacaaga aggagcgtct0 0 78.79 56.3622.43 Both
scaffold_1 1173 104305312 104305384 Thr TGT aattgtggct gcacttttct0 0 79.46 56.9222.54 Both
scaffold_118 32 1712926 1712998 Thr TGT cccgggcgac agctgctaca0 0 79.46 56.9222.54 Both
scaffold_118 30 1701881 1701953 Thr TGT gtcatgtggt caacccgaga0 0 80.19 55.9524.24 Both
scaffold_108 57 892398 892471 Thr TGT catgctcatg ttgtttttcc0 0 82.34 61.6420.70 Both
scaffold_143 13 328971 329044 Thr TGT catctgtatg taactttttc0 0 82.34 61.6420.70 Both
scaffold_143 19 503874 503947 Thr TGT cacctgtgtg tgactttttc0 0 82.34 61.6420.70 Both
scaffold_376 4 162123 162196 Thr TGT catctgtatg taactttttc0 0 82.34 61.6420.70 Both
scaffold_803 2 9759 9686 Thr TGT tgcctgtatg tgactttttc0 0 82.34 61.6420.70 Both
scaffold_143 141 664359 664286 Thr TGT catctgtatg taactttttc0 0 83.57 61.5022.07 Both
scaffold_108 50 793922 793995 Thr TGT caaccgagtt tacagtggta0 0 85.34 65.4119.93 Both
 
scaffold_108 35 515915 515986 Trp CCA gttatttagt cggaggttta0 0 47.17 41.096.08 Both
scaffold_6 1935 23831651 23831580 Trp CCA caacctgagt agggtggttg0 0 58.42 48.709.72 Both
scaffold_6 308 18224482 18224553 Trp CCA agctaagaag tggatttttt0 0 69.94 46.8323.11 Both
scaffold_108 95 2464315 2464386 Trp CCA ccttgcccgt ctgtgactac0 0 70.21 47.4522.76 Both
scaffold_108 209 2340256 2340185 Trp CCA tacttcctat gggggggctt0 0 70.64 48.8421.80 Both
scaffold_2 1022 93553820 93553891 Trp CCA aacccagcag tggggttttt0 0 71.65 49.8521.80 Both
scaffold_47 154 12240076 12240147 Trp CCA acgtctcgcc gttacttttt0 0 72.35 50.5521.80 Both
scaffold_108 113 2743592 2743663 Trp CCA cattgcctgt cgggggttaa0 0 72.40 47.9124.49 Both
scaffold_108 91 2431429 2431500 Trp CCA gggcggctgt gggtggtcgt0 0 72.48 52.3520.13 Both
scaffold_108 211 2322707 2322636 Trp CCA cattgtctgt cgggagttaa0 0 73.00 51.2121.79 Both
scaffold_108 214 2298202 2298131 Trp CCA cactgtgtgt cgagggttta0 0 73.00 51.2121.79 Both
scaffold_108 215 2292599 2292528 Trp CCA cactgtgtgt cgaggattaa0 0 73.00 51.2121.79 Both
scaffold_108 102 2585631 2585702 Trp CCA ccttgcctgt cagcggttac0 0 73.30 54.5118.79 Both
scaffold_108 179 2859550 2859479 Trp CCA ccttgcctgt gggtgattac0 0 74.00 52.2121.79 Both
scaffold_44 5 225512 225583 Trp CCA gcctacagga agctttttag0 0 74.00 52.2121.79 Both
scaffold_44 7 234779 234850 Trp CCA cagcgcccgt ggatgagcac0 0 74.00 52.2121.79 Both
scaffold_96 25 3745577 3745648 Trp CCA tcctcactat ttgtcgcctt0 0 74.80 53.0021.80 Both
scaffold_47 400 12270953 12270882 Trp CCA cgtttgagaa aaaggagtac0 0 74.81 54.9419.87 Both
scaffold_108 174 2887744 2887673 Trp CCA ggtgagctgt cgggtcgttg0 0 75.13 52.0123.12 Both
scaffold_108 108 2691925 2691996 Trp CCA ccttgcctgt cggtgattac0 0 79.23 56.1123.12 Both
scaffold_108 183 2810998 2810927 Trp CCA ccttgcccgt ggatgactgc0 0 79.23 56.1123.12 Both
scaffold_108 99 2525154 2525225 Trp CCA tcttgcctgt cggtgattac0 0 79.23 56.1123.12 Both
scaffold_108 105 2643244 2643315 Trp CCA ccttgcctgt cagtgattac0 0 81.86 57.0324.83 Both
 
scaffold_20 120 8508278 8508365 Tyr ATA gcatctaagt gtatatgaag8508315 8508329 51.35 31.5619.79 Both
scaffold_8 135 12280070 12280163 Tyr GTA tttctttgtc gatgttttct12280107 12280127 74.87 48.4626.41 Both
scaffold_118 56 1531771 1531682 Tyr GTA atacgtgctc agagcccctg1531734 1531718 72.85 46.4426.41 Both
scaffold_118 19 1604617 1604707 Tyr GTA gagcatgcac agtgcccgac1604654 1604671 69.39 47.4521.94 Both
scaffold_118 20 1607651 1607740 Tyr GTA tggagtgcac gttgcttatc1607688 1607704 73.06 46.6526.41 Both
scaffold_118 21 1610530 1610619 Tyr GTA aggtgtgcac gtggttgagg1610567 1610583 75.47 49.0626.41 Both
scaffold_118 22 1615736 1615825 Tyr GTA cagtgcgcac ggtgcgaggt1615773 1615789 72.29 45.8826.41 Both
scaffold_118 23 1618831 1618920 Tyr GTA tactgtgcac agtgcccgac1618868 1618884 71.97 45.5626.41 Both
scaffold_118 24 1622147 1622236 Tyr GTA cagaccgcac ggtgcctgat1622184 1622200 74.20 47.7926.41 Both
scaffold_118 25 1625503 1625591 Tyr GTA cagagtgcac gatgcctaac1625540 1625555 72.35 45.9426.41 Both
scaffold_118 26 1628837 1628926 Tyr GTA tagtatgggc ggtgcctgat1628874 1628890 75.48 49.0726.41 Both
scaffold_118 28 1631184 1631273 Tyr GTA cagcgtgcac ggtgtcggat1631221 1631237 75.33 48.9226.41 Both
scaffold_118 29 1634581 1634670 Tyr GTA cgctctgcac ggtgcccgaa1634618 1634634 70.74 44.3326.41 Both
scaffold_118 31 1702617 1702707 Tyr GTA tctcccgtac agggacggta1702654 1702671 73.39 46.9826.41 Both
scaffold_8 212 18717715 18717804 Tyr GTA acttaggcac ggtacctgat18717752 18717768 74.83 48.4226.41 Both
scaffold_8 220 19100866 19100958 Tyr GTA tctgggtgtc gacattttcc19100903 19100922 74.10 47.6926.41 Both
scaffold_20 523 40592030 40592118 Tyr GTA gctagcgagg cttcgtgtgg40592067 40592082 75.99 51.2924.70 Both
scaffold_44 800 58566 58478 Tyr GTA agcacagagc ctcagttttt58529 58514 76.83 50.4226.41 Both
scaffold_44 799 64402 64313 Tyr GTA ctccaagccc cggcgttttt64365 64349 77.50 51.4526.05 Both
scaffold_44 798 70281 70194 Tyr GTA ctccgcgggt actcgtcttt70244 70230 75.70 49.2926.41 Both
 
scaffold_9 45 4237630 4237710 Undet ??? ttggctaatt ctctatgggg0 0 25.37 14.3810.99 Both
scaffold_8 1677 52726263 52726194 Undet ??? tttatatggt gttcatgtgc0 0 46.63 39.487.15 Both
scaffold_53 410 8535753 8535684 Undet ??? gacttcagga ccccatgtgc0 0 49.72 35.0914.63 Both
scaffold_67 406 3503649 3503580 Undet ??? agttgctggg cctcaactgc0 0 55.78 37.9217.86 Eufind
scaffold_9 1195 72752518 72752447 Undet ??? gatacatgag ccccaagcac0 0 64.87 44.7620.11 Eufind
 
scaffold_139 58 1557017 1557089 Val AAC tgtaccgtgt aattttgcat0 0 41.77 33.408.37 Both
scaffold_4 794 56700943 56701014 Val AAC atatattacc ctttactgga0 0 55.99 43.5012.49 Eufind
scaffold_244 13 295997 296069 Val AAC acacaagcga ttgtgagttc0 0 56.01 50.565.45 Eufind
scaffold_36 89 5323336 5323408 Val AAC ttagactaga cacgatatct0 0 56.30 46.519.79 Eufind
scaffold_1069 1 4069 4141 Val AAC agccaagtgt gtgggttggc0 0 57.42 46.7810.64 Eufind
scaffold_244 9 174699 174772 Val AAC acagaagtga aactgggcat0 0 59.90 41.7918.11 Eufind
scaffold_139 108 254752 254680 Val AAC acacaaagag gactggtcat0 0 64.29 49.6614.63 Eufind
scaffold_139 111 147694 147622 Val AAC ggacaagtga aatactcctt0 0 65.58 49.0316.55 Both
scaffold_139 105 307847 307775 Val AAC tgacaagcaa gatttcgcat0 0 66.23 51.3214.91 Eufind
scaffold_139 91 614542 614470 Val AAC tggtaggcaa agctggccac0 0 66.25 51.5114.74 Eufind
scaffold_108 232 2127170 2127098 Val AAC catagtgcgt acatttctat0 0 66.62 56.2710.35 Eufind
scaffold_108 151 3390888 3390816 Val AAC agagaagtga aactgggcat0 0 67.18 46.8620.32 Both
scaffold_139 106 298136 298064 Val AAC atacaaatag gaccggtcgt0 0 69.11 58.0111.10 Both
scaffold_75 365 1257715 1257643 Val AAC acagctggta gagtgcagta0 0 69.29 50.5818.71 Both
scaffold_139 102 391881 391809 Val AAC acacaaatag gactggtcat0 0 72.47 56.6515.82 Both
scaffold_502 3 51302 51374 Val AAC acacacacag gacggatcct0 0 73.27 48.0825.19 Both
scaffold_139 116 37348 37276 Val AAC agataagtga aactgggtgt0 0 76.43 51.2425.19 Both
scaffold_139 110 185071 184999 Val AAC gcacaggtag agctgctgct0 0 77.12 59.5217.60 Eufind
scaffold_139 100 430643 430571 Val AAC gcacaaatag gactggtcat0 0 78.55 58.1220.43 Both
scaffold_139 93 575207 575135 Val AAC tcaagtgcaa aatttctcat0 0 78.75 54.8823.87 Both
scaffold_502 2 10549 10621 Val AAC acacaaagag gactggtcct0 0 78.87 58.2720.60 Both
scaffold_244 3 47736 47808 Val AAC agacaactga aactgggcag0 0 79.68 60.0519.63 Both
scaffold_519 6 52485 52413 Val AAC agacaactga aactgggcag0 0 79.68 60.0519.63 Both
scaffold_139 92 605615 605543 Val AAC acacgaagag gacgggtcct0 0 80.12 60.0620.06 Both
scaffold_108 145 3455652 3455581 Val AAC agagaagcga aactgggcgt0 0 80.53 54.9325.60 Eufind
scaffold_244 10 220117 220188 Val AAC agagaagcga aactgggcgt0 0 80.53 54.9325.60 Eufind
scaffold_139 104 348099 348027 Val AAC acagaaatag gactggtggt0 0 83.19 59.4623.73 Both
scaffold_108 77 2217099 2217171 Val AAC acagccaaga aagcccagct0 0 83.83 62.1221.71 Both
scaffold_108 234 2119665 2119593 Val AAC atcagagcgt tcaggttggg0 0 84.12 58.9425.18 Both
scaffold_139 90 631009 630937 Val AAC caatagctgg agcaaaactt0 0 84.34 59.1525.19 Both
scaffold_17 188 19690636 19690708 Val AAC tagaaagcga agctgggcat0 0 84.90 61.1823.72 Both
scaffold_108 228 2156683 2156611 Val AAC catagagcat acagctcggt0 0 85.07 59.8825.19 Both
scaffold_139 94 566650 566578 Val AAC acacaaagag gactggtcct0 0 85.07 59.8825.19 Both
scaffold_139 89 659546 659474 Val AAC cagtaagcga tgtaagttgc0 0 85.47 60.2925.18 Both
scaffold_108 227 2170261 2170189 Val AAC cactcaacgt aaagcagagt0 0 86.08 60.9025.18 Both
scaffold_1 1172 104274094 104274166 Val AAC ttgtctgtcg tatgtgtgtt0 0 86.26 62.3923.87 Both
scaffold_108 153 3351137 3351065 Val AAC agacaagcga aactgggcat0 0 86.79 61.6025.19 Both
scaffold_139 114 81086 81014 Val AAC agacaagcga acctgggcat0 0 86.79 61.6025.19 Both
scaffold_244 5 98331 98403 Val AAC ggacacgcga aactgggcgt0 0 86.79 61.6025.19 Both
scaffold_244 7 141288 141360 Val AAC ggacaggcga aactgggcgt0 0 86.79 61.6025.19 Both
scaffold_42 264 10597501 10597429 Val AAC cttcacagaa catttttttc0 0 86.79 61.6025.19 Both
scaffold_76 136 4897768 4897698 Val CAC tatgaacaag cttcatgtgc0 0 46.24 33.5412.70 Both
scaffold_16 914 39957792 39957721 Val CAC aatgtagctg ttttttcact0 0 46.51 29.1217.39 Both
scaffold_209 29 210439 210367 Val CAC gaacctcttg gttgcttttt0 0 57.74 49.438.31 Eufind
scaffold_265 7 133680 133752 Val CAC cacttacttg gttgcttttt0 0 60.67 54.576.10 Eufind
scaffold_64 247 4871826 4871754 Val CAC ttcccacgta gttgcttctg0 0 62.09 51.2010.89 Both
scaffold_422 1 35565 35637 Val CAC tttcctcggt cttgttcttt0 0 62.33 44.1818.15 Both
scaffold_139 99 439228 439156 Val CAC tgacaagcaa gacttctcat0 0 65.16 45.7519.41 Both
scaffold_530 1 51040 51112 Val CAC tttcctgggt gttgctcttt0 0 65.73 51.4114.32 Both
scaffold_245 13 177264 177192 Val CAC cactttcgtg gttgcgtttt0 0 67.53 49.8617.67 Eufind
scaffold_429 5 63230 63302 Val CAC cacttacgtg gttgcgtttt0 0 68.52 50.8717.65 Both
scaffold_265 12 204892 204820 Val CAC tttcccgggt gttgttcttt0 0 69.23 45.0124.22 Both
scaffold_139 101 400503 400431 Val CAC tgacaagcaa gatttctcat0 0 70.00 54.8015.20 Eufind
scaffold_139 103 356612 356540 Val CAC tgacaagcaa gatttctcat0 0 74.11 54.4819.63 Both
scaffold_11 1231 42754985 42754913 Val CAC accgtccgtg gctgactttt0 0 74.12 57.7016.42 Both
scaffold_245 15 112202 112130 Val CAC gaacctcagg ttgcttgttt0 0 74.98 53.1621.82 Both
scaffold_209 34 59515 59443 Val CAC cacttacctg gttgcgtttt0 0 78.11 56.9921.12 Both
scaffold_60 221 13985955 13985883 Val CAC tttcccgggt gttgctcttt0 0 78.42 55.9522.47 Both
scaffold_60 12 319870 319942 Val CAC cacctgcagg agcttctttt0 0 80.02 59.5220.50 Both
scaffold_308 1 19926 19998 Val CAC ttccccgggt gttgctcttt0 0 81.13 58.3922.74 Both
scaffold_139 95 532558 532486 Val CAC tggcaagcaa gatttctcat0 0 81.49 56.4625.03 Both
scaffold_429 4 54083 54155 Val CAC cacttacctg gttccttttt0 0 82.69 61.4221.27 Both
scaffold_209 24 379901 379829 Val CAC ttccccgggt gttggtcttt0 0 85.50 61.7823.72 Both
scaffold_139 97 487173 487101 Val CAC tgacaagcaa aacttggtgt0 0 86.08 60.8925.19 Both
scaffold_139 107 263263 263191 Val CAC tgacaagcaa aacttggtgt0 0 87.06 63.5823.48 Both
scaffold_11 1228 42853538 42853466 Val CAC aaggcacgcg gctttttttg0 0 87.39 62.2025.19 Both
scaffold_11 629 42525548 42525620 Val CAC ctattgcgcg acttccattt0 0 87.39 62.2025.19 Both
scaffold_11 637 42852697 42852769 Val CAC aaggcacgcg gctttttttg0 0 87.39 62.2025.19 Both
scaffold_127 71 1718799 1718727 Val CAC catccgctta gctcagtttt0 0 87.39 62.2025.19 Both
scaffold_33 471 10956538 10956466 Val CAC ctgctagcta gttggacctt0 0 87.39 62.2025.19 Both
scaffold_44 794 105420 105348 Val CAC tttacatcgg tgtttttttc0 0 87.39 62.2025.19 Both
scaffold_541 7 7389 7317 Val CAC gattctcagt gttgcttgtt0 0 87.39 62.2025.19 Both
scaffold_60 184 13436148 13436220 Val CAC tttcacgggt gttgctcttt0 0 87.39 62.2025.19 Both
scaffold_60 194 13710622 13710694 Val CAC ttttaggggt gttgctcttt0 0 87.39 62.2025.19 Both
scaffold_60 2 92621 92693 Val CAC caacctcaag gttgcttttt0 0 87.39 62.2025.19 Both
scaffold_502 1 1969 2041 Val CAC tggcaagcaa aacttggtgt0 0 87.79 62.6025.19 Both
scaffold_108 231 2135787 2135715 Val GAC atcagagcgt gcggtttggc0 0 85.36 60.1725.19 Both
scaffold_14 218 19060236 19060306 Val TAC gtgcctagga ccttaagagc0 0 26.04 14.6711.37 Both
scaffold_2 1074 96963511 96963581 Val TAC taagctgggg tctcgtgcac0 0 39.34 32.556.79 Both
scaffold_43 339 16049296 16049226 Val TAC cctcagtgag actcatgcgc0 0 39.85 26.5213.33 Both
scaffold_28 630 31266800 31266730 Val TAC tttcacttct cctcatgcac0 0 40.52 32.817.71 Both
scaffold_101 121 2261720 2261650 Val TAC agactgatag cctcattcac0 0 45.73 32.6813.05 Both
scaffold_12 514 38980913 38980983 Val TAC tctatggggg cttcatgcgc0 0 48.09 32.7915.30 Both
scaffold_108 150 3396825 3396753 Val TAC tacttgttgt gtggtatttc0 0 50.85 40.3910.46 Both
scaffold_0 2105 81881434 81881364 Val TAC tcacatggag cctaatgaac0 0 51.76 30.6021.16 Both
scaffold_30 475 18526101 18526031 Val TAC atgctatgag cctcaagcac0 0 53.17 33.8219.35 Both
scaffold_244 8 168785 168857 Val TAC tacttgttgt gtggtatttc0 0 54.30 43.8410.46 Both
scaffold_73 122 7975748 7975820 Val TAC ttatggtgaa tcacacgtat0 0 58.48 38.5019.98 tRNAscan
scaffold_55 547 59525 59453 Val TAC tcatttaagc tatggggact0 0 59.50 45.8313.67 Eufind
scaffold_108 146 3443705 3443633 Val TAC tacttcttgt gtggtatttc0 0 59.90 52.197.71 Eufind
scaffold_244 4 82427 82499 Val TAC tacttgttgt gtggtatttc0 0 63.76 52.1211.64 Both
scaffold_519 5 61108 61036 Val TAC tacttattgt gtggtatttc0 0 64.13 50.8013.33 Both
scaffold_244 27 38434 38362 Val TAC tacttgtagt acttaacctt0 0 65.58 56.419.17 Eufind
scaffold_108 144 3464178 3464106 Val TAC tacttgttgt gtggtatttc0 0 65.94 51.9813.96 Both
scaffold_139 115 45948 45876 Val TAC tacttgttgt gtggtatttc0 0 65.94 51.9813.96 Both
scaffold_244 1 6976 7048 Val TAC tacttgttgt gtggtatttc0 0 65.94 51.9813.96 Both
scaffold_244 6 132727 132799 Val TAC tacttgttgt gtggtatttc0 0 65.94 51.9813.96 Both
scaffold_519 7 19569 19497 Val TAC tacttgttgt gtggcatttc0 0 65.94 51.9813.96 Both
scaffold_108 140 3444311 3444383 Val TAC tatttgtagt acttaatctt0 0 67.36 55.0512.31 Both
scaffold_502 5 34206 34134 Val TAC tatttcctgt acctagtttt0 0 70.80 55.8514.95 Both
scaffold_519 1 20175 20247 Val TAC tacttgtagt acttaatctt0 0 71.29 52.7218.57 Both
scaffold_139 4 46560 46632 Val TAC tacttgtagt acttaacctt0 0 71.49 59.1512.34 Both
scaffold_244 14 286839 286767 Val TAC tacttgtagt acttaatctt0 0 71.58 56.6314.95 Both
scaffold_139 29 584905 584977 Val TAC tatttcctgt acctaaactt0 0 73.47 51.0922.38 Both
scaffold_139 12 203729 203801 Val TAC tatttcctgt acctcagctc0 0 74.39 56.7017.69 Both
scaffold_139 14 230605 230677 Val TAC tatttcctgt acctaggctc0 0 75.67 54.0621.61 Both
scaffold_244 19 168180 168108 Val TAC tacttgtagt acttaacctt0 0 76.35 59.2517.10 Both
scaffold_108 233 2124326 2124254 Val TAC ctctgtagta gttctttgtc0 0 76.94 54.6922.25 Both
scaffold_139 27 542647 542719 Val TAC tatttcctgt acctggtttt0 0 76.99 60.1316.86 Both
scaffold_519 3 61719 61791 Val TAC tacttgtagt acttaacctt0 0 77.53 58.9718.56 Both
scaffold_108 134 3360286 3360358 Val TAC tacttgtagt acgtaacctt0 0 78.23 59.6718.56 Both
scaffold_108 139 3433421 3433493 Val TAC tacttgtagt acttaacctt0 0 78.23 59.6718.56 Both
scaffold_108 142 3464785 3464857 Val TAC tacttgtagt acttaacctt0 0 78.23 59.6718.56 Both
scaffold_139 1 2538 2610 Val TAC tacttgtagt acttaatctt0 0 78.23 59.6718.56 Both
scaffold_244 16 256020 255948 Val TAC tacttgtagt acttaacctt0 0 78.23 59.6718.56 Both
scaffold_244 22 132120 132048 Val TAC tacttgtagt acttaacctt0 0 78.23 59.6718.56 Both
scaffold_244 28 6369 6297 Val TAC tacttatagt acttaacctt0 0 78.23 59.6718.56 Both
scaffold_139 34 657967 658039 Val TAC tggttgttga actcaagctt0 0 79.95 61.3918.56 Both
scaffold_139 21 407886 407958 Val TAC tatttcctgt acagccttca0 0 80.45 60.3220.13 Both
scaffold_139 23 456984 457056 Val TAC gatttcctgt acctagactc0 0 81.37 58.0123.36 Both
scaffold_139 25 503802 503874 Val TAC tatttcctgt acagccatca0 0 81.37 58.0123.36 Both
scaffold_71 147 10580927 10580999 Val TAC gaaagcaagt cagagggctg0 0 82.67 57.6325.04 Both
scaffold_139 39 716095 716167 Val TAC tctctgtcgc acacttgctt0 0 83.17 64.6118.56 Both
scaffold_15 523 39283758 39283830 Val TAC catatttttt gttcttggaa0 0 83.88 58.9324.95 Both
scaffold_39 217 12892670 12892742 Val TAC ctttcaggaa tgactggcac0 0 84.38 61.0523.33 Both
scaffold_39 613 13209504 13209432 Val TAC aggccgtgaa tcacgtgaat0 0 85.12 60.0825.04 Both
scaffold_108 230 2140489 2140417 Val TAC atccgtcgta gatctttttc0 0 85.22 60.2824.94 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.