GtRNAdb

tRNAscan-SE Analysis of Legionella pneumophila Corby

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 415373 415449 Ile GAT aaacagcatt tttaatagct0 0 95.81 67.7328.08 Both
chr 2 450123 450197 Val GAC gttgaattat taattcctgg0 0 86.87 62.2824.59 Both
chr 3 612823 612899 Pro GGG cctaaccaat tcaaaacccc0 0 79.71 59.2220.49 Both
chr 4 1099944 1100033 Ser GCT accattgatt atcaacgcgc0 0 77.22 43.7033.52 Both
chr 5 1100040 1100116 Arg ACG gccaatcaac tttttaatca0 0 85.83 70.8215.01 Both
chr 6 1510453 1510528 Phe GAA agccttgagt ttagaatcaa0 0 90.90 63.8727.03 Both
chr 7 1522008 1522082 Phe GAA taaaaatagt ctagaatcaa0 0 31.19 21.0210.17 Eufind
chr 8 1678626 1678701 Lys TTT agcctcttta gtttttaata0 0 88.81 64.1524.66 Both
chr 9 1678757 1678832 Lys TTT taccctgaaa ttctggtctc0 0 88.81 64.1524.66 Both
chr 10 1678893 1678969 Arg TCG acaccccatc tttaatggct0 0 87.32 65.8621.46 Both
chr 11 2047341 2047417 Met CAT ccccctctcc attaaagcca0 0 94.81 71.9422.87 Both
chr 12 2632303 2632390 Ser GGA ttgcccggtt aattacaatt0 0 72.38 42.1930.19 Both
chr 13 2716311 2716397 Leu CAA gaccgcgcgt atcaataaac0 0 76.90 52.5924.31 Both
chr 14 3016050 3016124 Gln TTG ctacaattat ttttcttgtt0 0 68.05 38.4229.63 Both
chr 15 3037627 3037703 Pro CGG caaataaacg tataaataaa0 0 84.61 60.1724.44 Both
chr 16 3539736 3539822 Leu CAG aacgccctat ttaattaagt0 0 69.14 40.1329.01 Both
chr 17 3319512 3319428 Leu GAG ataaaaataa ttttaaatcg0 0 69.69 40.8528.84 Both
chr 18 3304532 3304456 Met CAT cctcagttga atttataaaa0 0 84.63 61.9022.73 Both
chr 19 3279054 3278979 Ala TGC gtccaagatt atagattgag0 0 88.89 71.8417.05 Both
chr 20 3275586 3275511 Thr TGT taaagaatat tctaaatagg0 0 94.56 75.9218.64 Both
chr 21 3275438 3275354 Tyr GTA cgttcttttt gttaagagag0 0 73.58 43.1030.48 Both
chr 22 3275333 3275260 Gly TCC aagttaaaaa aagtagtgaa0 0 82.65 61.0621.59 Both
chr 23 3275207 3275132 Thr GGT tgatatgaaa tgtaatataa0 0 90.41 68.3922.02 Both
chr 24 3273845 3273770 Trp CCA aataaaattt actacaagta0 0 82.40 58.8523.55 Both
chr 25 3007176 3007103 Gly CCC gtgagttttt taaaaaaatg0 0 75.28 53.6921.59 Both
chr 26 2993193 2993118 Ala TGC gtccaagatt atagattgag0 0 88.89 71.8417.05 Both
chr 27 2519633 2519561 Thr CGT ttttctttaa tagtaaaatc0 0 80.63 68.2012.43 Both
chr 28 1970684 1970609 Gly GCC ccgtagagac aatttaagcg0 0 93.55 68.1125.44 Both
chr 29 1970548 1970475 Cys GCA atagatttga ttaaaagaca0 0 63.55 44.0819.47 Both
chr 30 1970458 1970372 Leu TAA gacagtgaat aatttgacta0 0 75.76 41.3434.42 Both
chr 31 1814431 1814359 Lys CTT tttataatat atcaattatt0 0 85.35 63.2022.15 Both
chr 32 1449537 1449462 Ala GGC accttatttt tcaacatcgt0 0 83.68 67.1916.49 Both
chr 33 1449423 1449348 Glu TTC aaagtactag ttatttggca0 0 58.59 34.2124.38 Both
chr 34 1449291 1449216 Glu TTC taagatccag tataattgtt0 0 58.59 34.2124.38 Both
chr 35 1433190 1433114 Pro TGG ggacgggtat tttaagcgcc0 0 85.59 71.9113.68 Both
chr 36 1433108 1433032 Arg TCT gaccatttaa gccgccttgc0 0 86.27 66.6819.59 Both
chr 37 1432871 1432796 His GTG agtaattttg tttgtaacag0 0 79.33 58.2021.13 Both
chr 38 1432705 1432621 Leu TAG caacctgatt tttcatgata0 0 71.89 39.5132.38 Both
chr 39 1426099 1426024 Val TAC taagttttca agaaatggag0 0 93.01 68.9324.08 Both
chr 40 1426017 1425941 Asp GTC accaagaaat gataaacgcg0 0 89.49 68.5920.90 Both
chr 41 802289 802213 Met CAT gacctcttgt tttacatcat0 0 93.63 70.1623.47 Both
chr 42 746246 746170 Arg CCT taaagtcaaa atgaaaccag0 0 80.71 55.7424.97 Both
chr 43 701632 701545 Ser TGA attctcgacc gacaacatta0 0 62.37 24.7637.61 Both
chr 44 88521 88446 Asn GTT ccgcctcaat atcccattct0 0 89.51 62.5526.96 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.