GtRNAdb

tRNAscan-SE Analysis of Leptospira interrogans serovar Copenhageni

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA25
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
11
Predicted pseudogenes1
Total tRNAs37


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
1
CGC
 
TGC
 
1
GlyACC
 
GCC
1
CCC
 
TCC
1
2
ProAGG
 
GGG
 
CGG
 
TGG
1
1
ThrAGT
 
GGT
 
CGT
1
TGT
1
2
ValAAC
 
GAC
1
CAC
 
TAC
 
1

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
1
CGA
 
TGA
 
ACT
 
GCT
 
 
 
 
 
1
ArgACG
 
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
 
TCT
1
2
LeuAAG
 
GAG
1
CAG
 
TAG
1
 
 
 
 
CAA
1
TAA
1
4

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
1
 
 
 
 
1
AsnATT
 
GTT
1
 
 
 
 
1
Lys 
 
 
 
CTT
 
TTT
1
1
AspATC
 
GTC
1
 
 
 
 
1
Glu 
 
 
 
CTC
 
TTC
1
1
HisATG
 
GTG
1
 
 
 
 
1
Gln 
 
 
 
CTG
 
TTG
 
0

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
 
 
 
TAT
 
0
Met 
 
 
 
CAT
3
 
 
3
TyrATA
 
GTA
1
 
 
 
 
1
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
1
 
 
 
 
1
Trp 
 
 
 
CCA
 
 
 
0
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.