GtRNAdb

tRNAscan-SE Analysis of Magnaporthe oryzae 70-15 (v8)

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
tRNA Gene Summary




tRNAs Decoding Standard 20 AA190
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes134
Total tRNAs325


Intron Summary

tRNAs with introns
157
Ala
AGC
9
Ala
CGC
2
Ala
TGC
3
Gly
GCC
14
Gly
CCC
3
Gly
TCC
3
Pro
AGG
5
Pro
CGG
2
Pro
TGG
2
Thr
AGT
4
Thr
CGT
2
Thr
TGT
2
Val
AAC
6
Val
CAC
2
Val
TAC
1
Ser
AGA
4
Ser
CGA
3
Ser
TGA
2
Ser
GCT
3
Arg
ACG
6
Arg
TCG
2
Arg
CCT
3
Arg
TCT
1
Leu
AAG
7
Leu
CAG
4
Leu
TAG
1
Leu
CAA
2
Leu
TAA
1
Phe
GAA
7
Asn
GTT
6
Lys
CTT
6
Glu
CTC
9
Glu
TTC
1
Gln
CTG
6
Gln
TTG
2
Ile
AAT
8
Ile
TAT
1
Met
CAT
4
Tyr
GTA
5
Cys
GCA
3


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
9
GGC
 
CGC
2
TGC
3
14
GlyACC
 
GCC
14
CCC
3
TCC
3
20
ProAGG
5
GGG
 
CGG
2
TGG
2
9
ThrAGT
6
GGT
 
CGT
2
TGT
2
10
ValAAC
6
GAC
 
CAC
2
TAC
1
9

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
4
GGA
 
CGA
3
TGA
2
ACT
 
GCT
3
 
 
 
 
12
ArgACG
6
GCG
 
CCG
2
TCG
2
 
 
 
 
CCT
3
TCT
1
14
LeuAAG
7
GAG
 
CAG
4
TAG
1
 
 
 
 
CAA
2
TAA
1
15

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
7
 
 
 
 
7
AsnATT
 
GTT
6
 
 
 
 
6
Lys 
 
 
 
CTT
9
TTT
2
11
AspATC
 
GTC
10
 
 
 
 
10
Glu 
 
 
 
CTC
9
TTC
3
12
HisATG
 
GTG
4
 
 
 
 
4
Gln 
 
 
 
CTG
6
TTG
2
8

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
8
GAT
 
 
 
TAT
1
9
Met 
 
 
 
CAT
8
 
 
8
TyrATA
 
GTA
5
 
 
 
 
5
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
3
 
 
 
 
3
Trp 
 
 
 
CCA
4
 
 
4
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.