GtRNAdb

tRNAscan-SE Analysis of Monodelphis domestica (opossum) (Broad Oct 2006)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA481
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
3
Predicted pseudogenes0
Total tRNAs484


Intron Summary

tRNAs with introns
30
Ser
TGA
1
Arg
TCT
5
Leu
CAA
4
Ile
TAT
6
Tyr
GTA
14


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
15
GGC
 
CGC
6
TGC
9
30
GlyACC
 
GCC
24
CCC
8
TCC
11
43
ProAGG
11
GGG
 
CGG
3
TGG
8
22
ThrAGT
12
GGT
 
CGT
3
TGT
7
22
ValAAC
9
GAC
 
CAC
9
TAC
5
23

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
12
GGA
 
CGA
3
TGA
6
ACT
 
GCT
9
 
 
 
 
30
ArgACG
5
GCG
 
CCG
4
TCG
5
 
 
 
 
CCT
5
TCT
6
25
LeuAAG
8
GAG
 
CAG
11
TAG
6
 
 
 
 
CAA
4
TAA
2
31

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
12
 
 
 
 
12
AsnATT
 
GTT
13
 
 
 
 
13
Lys 
 
 
 
CTT
19
TTT
13
32
AspATC
1
GTC
24
 
 
 
 
25
Glu 
 
 
 
CTC
13
TTC
14
27
HisATG
 
GTG
9
 
 
 
 
9
Gln 
 
 
 
CTG
11
TTG
7
18

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
13
GAT
 
 
 
TAT
7
20
Met 
 
 
 
CAT
25
 
 
25
TyrATA
 
GTA
15
 
 
 
 
15
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
4
GCA
46
 
 
 
 
50
Trp 
 
 
 
CCA
9
 
 
9
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.