GtRNAdb

tRNAscan-SE Analysis of Methanocaldococcus infernus ME uid48803

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 279368 279445 Arg TCT tgttttgtga ctttgttaac0 0 84.94 73.8511.09  
chr 2 279466 279540 Glu TTC ctcttttact ttatatctta0 0 80.99 64.0916.90  
chr 3 487259 487343 SeC TCA ttttacgtgg cgttttttag0 0 29.41 0.000.00  
chr 4 644691 644764 Val TAC taattcccga ctatttttta0 0 83.66 66.5317.13  
chr 5 684046 684156 Trp CCA ctcttcttgt ttttttaaac684086 684118 59.56 37.4122.15  
chr 6 848916 849028 Met CAT tatatcccgt tttatttttt848954 848989 72.91 55.6417.27  
chr 7 900442 900514 Ala TGC taagccaagt ctttttattt0 0 89.96 79.2410.72  
chr 8 907309 907382 Thr CGT tctacaaaga tttattctcc0 0 84.50 65.5818.92  
chr 9 1239659 1239733 Ile GAT gctcttgtgt tcatttttct0 0 86.12 66.9319.19  
chr 10 1245820 1245908 Ser TGA ctatttttga ttggtttttt0 0 73.57 51.0522.52  
chr 11 1252365 1252441 Thr TGT caggttcgga atccttgccc0 0 90.56 78.8411.72  
chr 12 1252456 1252533 Pro TGG ttgcccatgt tttccctgtc0 0 69.01 48.2120.80  
chr 13 1252543 1252619 Tyr GTA atttccctgt ttaaaatcct0 0 81.68 59.2122.47  
chr 14 1252689 1252762 Lys TTT aaccttaagt cttggtacgg0 0 90.19 77.6812.51  
chr 15 1252930 1253007 Asp GTC tggcttatat atatttttta0 0 75.24 59.6815.56  
chr 16 1304935 1305011 Ala GGC tattttgagt tttttttcct0 0 81.41 68.3913.02  
chr 17 1300115 1300031 Ser GCT ccctttttat tcattaagtt0 0 72.78 54.8717.91  
chr 18 1156164 1156091 Phe GAA ctgttgtggt ctactttatt0 0 82.40 62.2920.11  
chr 19 1156078 1156003 Asn GTT actttattgt attttatttt0 0 81.69 63.5918.10  
chr 20 1155974 1155900 Met CAT ttaaattggt ctactttgct0 0 89.89 72.7617.13  
chr 21 1155892 1155818 Glu TTC ccactacttt ctaatttttt0 0 80.99 64.0916.90  
chr 22 1155768 1155681 Leu TAG caattagaga ttgttgtggc0 0 71.37 54.8916.48  
chr 23 1155672 1155601 His GTG cattgttgtg cttatttttt0 0 63.61 45.0318.58  
chr 24 1153848 1153776 Ala TGC taagccaagt ctttttattt0 0 89.96 79.2410.72  
chr 25 1124910 1124834 Val GAC ttacttttgt attctttttt0 0 76.22 55.5220.70  
chr 26 1047961 1047886 Gly GCC cttatgtggt ttcttagctg0 0 73.01 56.1816.83  
chr 27 1047869 1047797 Gly TCC gctgttaagt tcatttttta0 0 86.62 73.5913.03  
chr 28 922981 922906 Gln TTG tagattatgt ttttttatta0 0 64.71 42.9021.81  
chr 29 689848 689774 Arg GCG tttttctttt ctaattattt0 0 85.95 75.2010.75  
chr 30 660340 660253 Leu GAG gctttgccgt ttttttaagg0 0 71.19 54.0117.18  
chr 31 634936 634858 Met CAT tgttttggga tttttctctt0 0 81.79 57.2724.52  
chr 32 631282 631194 Ser GGA gctgtaaagt cttatttttt0 0 70.26 44.2426.02  
chr 33 627619 627543 Pro GGG ctttttccaa attttttatt0 0 70.49 56.2114.28  
chr 34 400090 400006 Leu TAA taccttctga ctatttttta0 0 78.01 62.3315.68  
chr 35 332989 332915 Cys GCA ccattatgga tattttttta0 0 55.10 42.7012.40  
chr 36 330851 330778 Val CAC ccctttaagt ctattttatt0 0 81.24 64.1117.13  
chr 37 115613 115540 Arg TCG gaactttaaa ctttttgtga0 0 79.22 62.2316.99  
chr 38 25535 25458 Thr GGT tatttttcgt tttttatgca0 0 88.59 74.8313.76  


Note: Only introns located between position 37 and 38 are listed in the table above.



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.