GtRNAdb

tRNAscan-SE Analysis of Methanocaldococcus infernus ME uid48803

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
tRNAscan-SE Run Options & Statistics

tRNA Summary for Your organism

tRNAs decoding Standard 20 AA:            37
Selenocysteine tRNAs (TCA):               1
Possible suppressor tRNAs (CTA,TTA):      0
tRNAs with undetermined/unknown isotypes: 0
Predicted pseudogenes:                    0
                                          -------
Total tRNAs:                              38

tRNAs with introns:     	2

| Gly-TCC: 1 | Met-CAT: 1 |


Isotype Counts:

Ala   : 3	  AGC:         GGC: 1       CGC:         TGC: 2     
Gly   : 3	  ACC:         GCC: 1       CCC:         TCC: 2     
Pro   : 2	  AGG:         GGG: 1       CGG:         TGG: 1     
Thr   : 3	  AGT:         GGT: 1       CGT: 1       TGT: 1     
Val   : 3	  AAC:         GAC: 1       CAC: 1       TAC: 1     
Ser   : 3	  AGA:         GGA: 1       CGA:         TGA: 1       ACT:         GCT: 1                               
Arg   : 3	  ACG:         GCG: 1       CCG:         TCG: 1                                 CCT:         TCT: 1     
Leu   : 3	  AAG:         GAG: 1       CAG:         TAG: 1                                 CAA:         TAA: 1     
Phe   : 1	  AAA:         GAA: 1                               
Asn   : 1	  ATT:         GTT: 1                               
Lys   : 1	                            CTT:         TTT: 1     
Asp   : 1	  ATC:         GTC: 1                               
Glu   : 2	                            CTC:         TTC: 2     
His   : 1	  ATG:         GTG: 1                               
Gln   : 1	                            CTG:         TTG: 1     
Ile   : 1	  AAT:         GAT: 1                    TAT:       
Met   : 3	                            CAT: 3                  
Tyr   : 1	  ATA:         GTA: 1                               
Supres: 0	                            CTA:         TTA:       
Cys   : 1	  ACA:         GCA: 1                               
Trp   : 0	                            CCA:                    
SelCys: 1	                                         TCA: 1     


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.