GtRNAdb

tRNAscan-SE Analysis of Methanocaldococcus infernus ME uid48803

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Predicted tRNA Secondary Structures


Click on "View tRNA" buttons to view 2-D tRNA structures

Cove-predicted tRNA secondary structures rendered by NAVIEW (c) 1988 Robert E. Bruccoleri


chr.trna16 (1304935-1305011)	Length: 77 bp
Type: Ala	Anticodon: GGC at 35-37 (1304969-1304971)	Score: 81.41
Seq: GGGCTGGTAGCTCAGCCtGGGAGAGCGCCGCATTGGCTGTGCGGAGGcCGCGGGTTCAAATCCCGCCCAGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna24 (1153848-1153776)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (1153815-1153813)	Score: 89.96
Seq: GGGCCCGTAGCTCAGCTGGGAGAGCGCCGGCCTTGCAAGCCGGAGGcCGTGGGTTCAAATCCCACCGGGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna7 (900442-900514)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (900475-900477)	Score: 89.96
Seq: GGGCCCGTAGCTCAGCTGGGAGAGCGCCGGCCTTGCAAGCCGGAGGcCGTGGGTTCAAATCCCACCGGGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna29 (689848-689774)	Length: 75 bp
Type: Arg	Anticodon: GCG at 36-38 (689813-689811)	Score: 85.95
Seq: GCCCCGGTAGTTTAGTCtGGAcAAAACGCCGGACTGCGGATCCGGAGAtCGGGGGTTCAAATCCCCCCCGGGGCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna37 (115613-115540)	Length: 74 bp
Type: Arg	Anticodon: TCG at 36-38 (115578-115576)	Score: 79.22
Seq: GCCCTGGTAGTTTAGCCcGGAcAGAACGGGGGACTTCGGATCCCCAGACCCGGGTTCAAATCCCGGCCAGGGCT
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna1 (279368-279445)	Length: 78 bp
Type: Arg	Anticodon: TCT at 36-38 (279403-279405)	Score: 84.94
Seq: GGACCCGTAGCCTAGCCtGGAtAGGGCACCGGCCTTCTAAGCCGGGGGtCGGGGGTTCAAATCCCCCCGGGTCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna19 (1156078-1156003)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (1156045-1156043)	Score: 81.69
Seq: GCCCCCATAGCTCAGCTGGTAGAGCGACGGACTGTTAATCCGTAGGtCGCAGGTTCGAGTCCTGCTGGGGGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna15 (1252930-1253007)	Length: 78 bp
Type: Asp	Anticodon: GTC at 37-39 (1252966-1252968)	Score: 75.24
Seq: GCCCTGGTGGTGTAGCCcGGCctATCATACGGGACTGTCACTCCCGTGACTCGGGTTCAAATCCCGGCCAGGGCGCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna35 (332989-332915)	Length: 75 bp
Type: Cys	Anticodon: GCA at 33-35 (332957-332955)	Score: 55.10
Seq: GCCGGGGTAGTCTAGGGGCtAGGCAGCGGACTGCAGATCCGCTTTaCGTGGGTTCAAATCCCACCCCCGGCTCCA
Str: >>>>>>>..>.>>........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna28 (922981-922906)	Length: 76 bp
Type: Gln	Anticodon: TTG at 35-37 (922947-922945)	Score: 64.71
Seq: AGCCCGGTGGTGTAGCGGCctATCATCCGGGGCTTTGGACCCCGGGACCGCGGTTCGAATCCGCGCCGGGCTGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna21 (1155892-1155818)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (1155856-1155854)	Score: 80.99
Seq: GCTCCGGTGGTGTAGTCcGGCcaATCATGCGGGCCTTTCGAGCCCGCGACCCGGGTTCAAATCCCGGCCGGAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna2 (279466-279540)	Length: 75 bp
Type: Glu	Anticodon: TTC at 37-39 (279502-279504)	Score: 80.99
Seq: GCTCCGGTGGTGTAGTCcGGCcaATCATGCGGGCCTTTCGAGCCCGCGACCCGGGTTCAAATCCCGGCCGGAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna26 (1047961-1047886)	Length: 76 bp
Type: Gly	Anticodon: GCC at 35-37 (1047927-1047925)	Score: 73.01
Seq: GCGGCCTTGGTGTAGCCtGGTAACACACGGGCCTGCCACGCCCGGAcCCCGGGTTCAAATCCCGGAGGCCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna27 (1047869-1047797)	Length: 73 bp
Type: Gly	Anticodon: TCC at 35-37 (1047835-1047833)	Score: 86.62
Seq: GCGCCGGTGGTGTAGCCtGGTATCACTCTGGCCTTCCAAGCCAGCGACCCGGGTTCAAATCCCGGCCGGCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna23 (1155672-1155601)	Length: 72 bp
Type: His	Anticodon: GTG at 34-36 (1155639-1155637)	Score: 63.61
Seq: GCCGGGGTGGGGTAGTGGCcATCCTGGGGGACTGTGGATCCCCTGACCCGGGTTCAATTCCCGGTCCCGGCC
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna9 (1239659-1239733)	Length: 75 bp
Type: Ile	Anticodon: GAT at 36-38 (1239694-1239696)	Score: 86.12
Seq: AGGGCGGTGGCTCAGCCtGGTtAGAGTGCTCGGCTGATAACCGAGTGGtCCGGGGTTCAAATCCCCGCCGCCCTA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna30 (660340-660253)	Length: 88 bp
Type: Leu	Anticodon: GAG at 37-39 (660304-660302)	Score: 71.19
Seq: GCGGGGGTCGCCAAGCCtGGCcaAAGGCGCCAGATTGAGGGTCTGGTCCCGTAGGGGTtCGCGGGTTCAAATCCCGTCCCCCGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna34 (400090-400006)	Length: 85 bp
Type: Leu	Anticodon: TAA at 37-39 (400054-400052)	Score: 78.01
Seq: GCGGGGGTCGCCAAGCCtGGCcaAAGGCGCCGGACTTAAGATCCGGTCCCGTAGGGGTtCGGGGGTTCAAATCCCCTCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
                    
chr.trna22 (1155768-1155681)	Length: 88 bp
Type: Leu	Anticodon: TAG at 37-39 (1155732-1155730)	Score: 71.37
Seq: GCAGGGGTCGCCAAGCCtGGCcaAAGGCGCCGGGCCTAGGACCCGGTCCCGTAGGGGTtCGGGGGTTCAAATCCCCTCCCCTGCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
                    
chr.trna14 (1252689-1252762)	Length: 74 bp
Type: Lys	Anticodon: TTT at 35-37 (1252723-1252725)	Score: 90.19
Seq: GGGCCCGTAGCTCAGCCtGGCAGAGCGCCTGGCTTTTAACCAGGTGGtCGGGGGTTCAAATCCCCTCGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna31 (634936-634858)	Length: 79 bp
Type: Met	Anticodon: CAT at 37-39 (634900-634898)	Score: 81.79
Seq: AGCGGGGTGGGGTAGCCaGGTccATCCCGCCGGGCTCATAACCCGGAGAtCGGAGGTTCAAATCCTCCCCCCGCTACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna20 (1155974-1155900)	Length: 75 bp
Type: Met	Anticodon: CAT at 36-38 (1155939-1155937)	Score: 89.89
Seq: GGGCCCGTAGCTCAGCCtGGTcAGAGCGCTCGGCTCATAACCGAGTGGtCAAGGGTTCAAATCCCTTCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna6 (848916-849028)	Length: 113 bp
Type: Met	Anticodon: CAT at 35-37 (848950-848952)	Score: 72.91
Possible intron: 39-74 (848954-848989)
Seq: GCCGAGGTGGCTTAGCTGGTtATAGCGCCCGGCTCATAcggaccttccccagcattccgctggggtcctgggaaACCGGGAGGtCGGGGGTTCGAATCCCCCCCTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>...........................................<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna18 (1156164-1156091)	Length: 74 bp
Type: Phe	Anticodon: GAA at 35-37 (1156130-1156128)	Score: 82.40
Seq: GCCGCGGTAGTTCAGCCtGGGAGAACGCGGGACTGAAGATCCCGTTGtCGGGTGTTCAAATCACCCCCGCGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna33 (627619-627543)	Length: 77 bp
Type: Pro	Anticodon: GGG at 36-38 (627584-627582)	Score: 70.49
Seq: GGGGCCGTGGGGTAGCCtGGTtATCCTGTGCGCTTGGGGGGCGTGCGACCCGGGTTCAAGTCCCGGCGGCCCCACCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna12 (1252456-1252533)	Length: 78 bp
Type: Pro	Anticodon: TGG at 37-39 (1252492-1252494)	Score: 69.01
Seq: GGGCCTGTGGGGTAGCCtGGTctATCCTTTGGGATTTGGGATCCTGAGACCCCAGTTCAAATCTGGGCAGGCCCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna3 (487259-487343)	Length: 85 bp
Type: SeC	Anticodon: TCA at 36-38 (487294-487296)	Score: 29.41
Seq: CGCGGGGTACCGGGCTtGGTAgcCCGGGGCGGACTTCAGATCCGTCGagGGCGATGGCCCtCGGGGTTCGATTCCCCCCCCGCGC
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<....>>>....<<<...>>>>.......<<<<<<<<<<<.
                    
chr.trna17 (1300115-1300031)	Length: 85 bp
Type: Ser	Anticodon: GCT at 35-37 (1300081-1300079)	Score: 72.78
Seq: GCGGGGGTGGCCCAGCCtGGTACGGCGCGGGACTGCTAATCCCGTTGGGCATAGCCCTACCCGGGTTCAAATCCCGGCCCCCGCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<.
                    
chr.trna32 (631282-631194)	Length: 89 bp
Type: Ser	Anticodon: GGA at 36-38 (631247-631245)	Score: 70.26
Seq: GCGGAGGTAGCCAAGCCcGGCtACGGCGTGGGACTGGAGATCCCATGGGGCTTTGCCCCGCGGGGGTTCAAATCCCCCCCTCCGCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna10 (1245820-1245908)	Length: 89 bp
Type: Ser	Anticodon: TGA at 36-38 (1245855-1245857)	Score: 73.57
Seq: GCAGGGGTAGCCAAGCCcGGCtAAGGCGCTGGACTTGAGATCCAGTGGGGCCTTGCCCCGCCTGGGTTCAAATCCCAGCCCCTGCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.>..<.<<<..>>>>>.......<<<<<<<<<<<<....
                    
chr.trna8 (907309-907382)	Length: 74 bp
Type: Thr	Anticodon: CGT at 35-37 (907343-907345)	Score: 84.50
Seq: GCCCCGTTAGCTCAGCCtGGGAGAGCGGCTGATTCGTAATCAGCAGGtCGCGGGTTCAAATCCCGCACGGGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna38 (25535-25458)	Length: 78 bp
Type: Thr	Anticodon: GGT at 36-38 (25500-25498)	Score: 88.59
Seq: GCCTCGGTAGCTCAGCCtGGTcAGAGCGCCTGCTTGGTAAGCAGGAGGtCGCGGGTTCAAACCCCGCCCGAGGCTCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna11 (1252365-1252441)	Length: 77 bp
Type: Thr	Anticodon: TGT at 35-37 (1252399-1252401)	Score: 90.56
Seq: GCCTCGGTGGCTCAGCCtGGTAGAGCGCCTGACTTGTAATCAGGTGGtCGGGGGTTCAAATCCCCCCCGGGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna5 (684046-684156)	Length: 111 bp
Type: Trp	Anticodon: CCA at 37-39 (684082-684084)	Score: 59.56
Possible intron: 41-73 (684086-684118)
Seq: GGGGGTGTGGTGTAGCCtGGCctATCATCAGGGACTCCAGttgcctatagggcactggaccaaggcaggagaaATCCCTGGACCTGGGTTCAAATCCCAGCACCCCCACCA
Str: >>>>>>>..>>>.............<<<.>>>>>........................................<<<<<....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna13 (1252543-1252619)	Length: 77 bp
Type: Tyr	Anticodon: GTA at 35-37 (1252577-1252579)	Score: 81.68
Seq: CCCGCGGTAGTTCAGCCtGGTAGAACGGGGGACTGTAGATCCCCATGtCGCTGGTTCAAATCCGGCCCGCGGGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna36 (330851-330778)	Length: 74 bp
Type: Val	Anticodon: CAC at 35-37 (330817-330815)	Score: 81.24
Seq: GGGCCCATGGTCTAGCTGGCtATGATGCCGCCCTCACAAGGCGGTGGtCGCCGGTTCGAATCCGGCTGGGCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
                    
chr.trna25 (1124910-1124834)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (1124876-1124874)	Score: 76.22
Seq: GGGCTCGTGGTCTAGCTGGCtATGATGCCGCCCTGACACGGCGGTGGtCGGGAGTTCGAATCTCCCCGAGCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
                    
chr.trna4 (644691-644764)	Length: 74 bp
Type: Val	Anticodon: TAC at 35-37 (644725-644727)	Score: 83.66
Seq: GGGCCCATAGTCTAGCTGGCtATGACGCCGCCCTTACAAGGCGGAGGtCGCCGGTTCGAATCCGGCTGGGCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
         



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.