GtRNAdb

tRNAscan-SE Analysis of Methylibium petroleiphilum PM1

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA68
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes1
Total tRNAs69


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
1
CGC
1
TGC
2
4
GlyACC
 
GCC
2
CCC
1
TCC
1
4
ProAGG
 
GGG
2
CGG
2
TGG
2
6
ThrAGT
1
GGT
1
CGT
1
TGT
1
4
ValAAC
 
GAC
1
CAC
2
TAC
1
4

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
1
CGA
2
TGA
1
ACT
 
GCT
2
 
 
 
 
6
ArgACG
2
GCG
 
CCG
2
TCG
 
 
 
 
 
CCT
2
TCT
1
7
LeuAAG
 
GAG
1
CAG
2
TAG
1
 
 
 
 
CAA
2
TAA
 
6

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
2
 
 
 
 
2
AsnATT
 
GTT
2
 
 
 
 
2
Lys 
 
 
 
CTT
2
TTT
1
3
AspATC
 
GTC
2
 
 
 
 
2
Glu 
 
 
 
CTC
 
TTC
2
2
HisATG
 
GTG
2
 
 
 
 
2
Gln 
 
 
 
CTG
 
TTG
2
2

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
2
 
 
TAT
 
2
Met 
 
 
 
CAT
4
 
 
4
TyrATA
 
GTA
2
 
 
 
 
2
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
2
 
 
 
 
2
Trp 
 
 
 
CCA
2
 
 
2
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.