GtRNAdb

tRNAscan-SE Analysis of Microcebus murinus (Mouse lemur) (Jun 2003)

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
tRNA Gene Summary




tRNAs Decoding Standard 20 AA258
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs258


Intron Summary

tRNAs with introns
18
Arg
TCT
4
Leu
CAA
3
Ile
TAT
3
Tyr
GTA
8


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
11
GGC
 
CGC
3
TGC
5
19
GlyACC
 
GCC
11
CCC
2
TCC
7
20
ProAGG
7
GGG
 
CGG
3
TGG
4
14
ThrAGT
3
GGT
 
CGT
2
TGT
3
8
ValAAC
4
GAC
 
CAC
5
TAC
2
11

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
7
GGA
 
CGA
3
TGA
2
ACT
 
GCT
7
 
 
 
 
19
ArgACG
6
GCG
 
CCG
2
TCG
3
 
 
 
 
CCT
3
TCT
5
19
LeuAAG
5
GAG
 
CAG
7
TAG
2
 
 
 
 
CAA
3
TAA
3
20

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
8
 
 
 
 
8
AsnATT
 
GTT
9
 
 
 
 
9
Lys 
 
 
 
CTT
6
TTT
5
11
AspATC
 
GTC
5
 
 
 
 
5
Glu 
 
 
 
CTC
8
TTC
9
17
HisATG
 
GTG
6
 
 
 
 
6
Gln 
 
 
 
CTG
12
TTG
4
16

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
4
GAT
 
 
 
TAT
3
7
Met 
 
 
 
CAT
14
 
 
14
TyrATA
 
GTA
8
 
 
 
 
8
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
1
GCA
20
 
 
 
 
21
Trp 
 
 
 
CCA
6
 
 
6
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.