GtRNAdb

tRNAscan-SE Analysis of Mus musculus (mm9 July 2007)

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr11 238 51790041 51790112 Ala AGC cactgaggct agagaggaaa0 0 31.32 21.579.75 Both
chrX 159 53840716 53840788 Ala AGC gtcaagggcc aaaaccaggt0 0 36.56 27.039.53 Both
chr11 1203 116277365 116277293 Ala AGC ggggcggtga gcaatgaata0 0 37.96 30.007.96 Both
chr9 1100 74956819 74956737 Ala AGC ttaaaataca gataaataaa0 0 43.22 30.5012.72 Both
chr10 979 77846462 77846390 Ala AGC ctgagaggct agaatggaag0 0 46.87 37.419.46 Both
chr10 1120 61853944 61853872 Ala AGC agcaagactt taaagcatgt0 0 53.72 43.3810.34 Both
chr13 963 23504882 23504810 Ala AGC cctctacctt gctattatgt0 0 56.23 37.9818.25 Both
chr4 645 132071923 132071994 Ala AGC tttcgcatgt tttttaaatc0 0 56.36 42.5413.82 Eufind
chr19 8 3576263 3576335 Ala AGC aattatagct tagcatagtt0 0 58.48 35.5222.96 Both
chr13 94 23377518 23377590 Ala AGC actgtaactc gtttttatgt0 0 62.18 38.1624.02 Both
chr13 96 23390930 23391002 Ala AGC tccatatgtc gttattcctt0 0 62.18 38.1624.02 Both
chr13 966 23492736 23492664 Ala AGC tactatggag cagcttttga0 0 62.18 38.1624.02 Both
chr13 102 23523281 23523353 Ala AGC accatcagaa gttttgcatt0 0 63.06 39.9523.11 Both
chr3 29 19528995 19529067 Ala AGC tgccggtgga gttccccttt0 0 63.68 41.0222.66 Both
chr5 110 31190888 31190960 Ala AGC cactacagct cttcctttta0 0 63.68 41.0222.66 Both
chr13 66 21314455 21314526 Ala AGC tggtacgtga gttttcaagc0 0 77.18 53.3823.80 Both
chr13 67 21325914 21325985 Ala AGC tagctgtgtc gtgttttcaa0 0 77.18 53.3823.80 Both
chr13 69 21334439 21334510 Ala AGC atctgcaagt ttctagcaaa0 0 77.42 52.2625.16 Both
chr13 71 21351637 21351708 Ala AGC ttcaagtggt ggcttttgat0 0 81.40 56.2825.12 Both
chrX 373 133104302 133104374 Ala CGC tgctagggct gggctttttt0 0 53.00 39.5513.45 Both
chrX 636 133102475 133102404 Ala CGC tgttagggct gagcttttct0 0 57.36 45.2512.11 Both
chr4 626 131681174 131681245 Ala CGC acctggtcac gtagtgtttt0 0 59.08 40.9118.17 Both
chrX 364 132902260 132902331 Ala CGC tgctagggct gagctttttc0 0 63.17 50.0813.09 Both
chrX 369 132936407 132936478 Ala CGC tgttagggct gagcttttct0 0 64.47 46.8017.67 Both
chrX 639 132930132 132930061 Ala CGC tgttagggct gagcttttct0 0 64.47 46.8017.67 Both
chrX 640 132913976 132913905 Ala CGC tgttagggct gagcttttct0 0 64.47 46.8017.67 Both
chr2 263 57034489 57034560 Ala CGC ttagcggctg agcagccgga0 0 73.12 53.5119.61 Both
chr13 70 21346089 21346160 Ala CGC caccacggag agactttttc0 0 74.81 51.2323.58 Both
chr13 955 23530637 23530566 Ala CGC aacagcggct gttccttttt0 0 74.81 51.2323.58 Both
chrX 375 133124904 133124975 Ala TGC tggcaggctt gggaattttt0 0 66.70 43.1123.59 Both
chrX 363 132892141 132892212 Ala TGC taccatagct gagcttttct0 0 69.60 49.0120.59 Both
chrX 371 133088264 133088335 Ala TGC gtgcaggagt atgtattcta0 0 71.34 50.7420.60 Both
chrX 637 132964975 132964904 Ala TGC gtgcaggagt atgtattcta0 0 71.34 50.7420.60 Both
chr5 702 125889842 125889913 Ala TGC ctctccatca actttttttt0 0 72.71 49.1223.59 Both
chrX 366 132915286 132915357 Ala TGC tactagagct cagcttttct0 0 73.19 49.6023.59 Both
chrX 368 132931443 132931514 Ala TGC tactagagct cagcttttct0 0 73.19 49.6023.59 Both
chrX 372 133103785 133103856 Ala TGC tactagagct gagtttttct0 0 73.19 49.6023.59 Both
chr11 2022 48648002 48647931 Ala TGC aacagtgagt aacggctacc0 0 74.45 50.8623.59 Both
chr5 1317 125884691 125884620 Ala TGC ggagcggtcg ccattttttt0 0 74.45 50.8623.59 Both
chr13 68 21332814 21332885 Ala TGC ttcaggagca cttccctttt0 0 79.65 56.3723.28 Both
 
chr13 973 22113085 22113013 Arg ACG tccctgtggc accatgtctc0 0 68.07 51.1816.89 Both
chr9 783 123438615 123438543 Arg ACG cctcagcacc acgtgtgcga0 0 68.07 51.1816.89 Both
chr3 1040 19528031 19527959 Arg ACG ccacgccgac agcttttggc0 0 70.76 49.5121.25 Both
chr13 951 23592463 23592391 Arg ACG acctataggt gtactttttt0 0 72.37 52.4919.88 Both
chr13 953 23538733 23538661 Arg ACG tacgtgtaca gaatgtacag0 0 72.37 52.4919.88 Both
chr14 209 55136533 55136605 Arg ACG caatgtctgc ttgggactgg0 0 72.37 52.4919.88 Both
chr11 945 106874180 106874252 Arg CCG actttgtagt catggtcgtt0 0 65.49 49.2416.25 Both
chr17 994 23687302 23687230 Arg CCG gtcagtgtag ctgcgtgcat0 0 68.22 53.5414.68 Both
chr13 997 21307399 21307327 Arg CCG cctaccactt gtgtgctttt0 0 69.88 52.7917.09 Both
chr6 107 38483931 38484003 Arg CCT agtagaagaa gttcgttttt0 0 67.28 54.1813.10 Both
chr17 995 23685807 23685735 Arg CCT tttctcgtca atgaggtgtt0 0 71.53 57.4814.05 Both
chr11 1234 115274690 115274618 Arg CCT tttttatcgc gtgttccctt0 0 73.41 55.8417.57 Both
chrX 321 108490826 108490898 Arg CCT tactgtgtaa gtagcacttg0 0 73.41 55.8417.57 Both
chr11 1022 115274295 115274367 Arg CCT cgtgccgtga aaaaggacta0 0 73.88 56.3117.57 Both
chr13 948 23618397 23618325 Arg TCG ctgcctctgt cttaactttt0 0 67.10 47.2219.88 Both
chr13 74 21371565 21371637 Arg TCG gcctgtgtgc gtatttttcc0 0 69.08 49.2019.88 Both
chr13 949 23595921 23595849 Arg TCG ttccatgtga agctagtgtt0 0 69.08 49.2019.88 Both
chr11 1023 115275093 115275165 Arg TCG tacttaggta aaatgttttc0 0 70.52 51.5019.02 Both
chr7 387 86611305 86611377 Arg TCG tctcgctggc acttgtatgt0 0 76.93 58.3418.59 Both
chr1 730 175320460 175320533 Arg TCT gtgtggtgag atcacctggc0 0 71.99 55.6616.33 Both
chr19 637 12086163 12086078 Arg TCT aaacacacct cttttatttt12086126 12086114 69.22 48.7720.45 Both
chr3 628 121995950 121995866 Arg TCT tccaacaggt gaacattttt121995913 121995902 71.18 52.8818.30 Both
chr13 985 22009116 22009031 Arg TCT gttacaggtg acggtatttt22009079 22009067 71.21 52.1319.08 Both
chr11 1818 68937070 68936984 Arg TCT cccgccatgt gttttattac68937033 68937020 70.50 50.0520.45 Both
 
chr3 285 96138894 96138967 Asn GTT tctcctatgt tgtgtttgct0 0 53.72 45.967.76 Both
chr15 1013 16205778 16205705 Asn GTT gtacagctgg acagcgttcc0 0 63.21 52.5810.63 Both
chr1 814 190765285 190765358 Asn GTT ttaaaggcgt acagcgctcc0 0 63.48 55.398.09 Eufind
chr3 283 96125997 96126070 Asn GTT gaatgctcgt tcgtgtgact0 0 81.15 57.8823.27 Both
chr3 757 96138611 96138538 Asn GTT caccttatgt tgtgtttcat0 0 81.41 58.9222.49 Both
chr10 381 79711904 79711977 Asn GTT gactaatgtc accacagcga0 0 82.24 58.9723.27 Both
chr1 1006 172964146 172964073 Asn GTT agcatcaccg gtgggaatgt0 0 82.24 58.9723.27 Both
chr11 1446 97563836 97563763 Asn GTT aactgtcacc gtctcggcct0 0 82.24 58.9723.27 Both
chr2 1947 18508744 18508671 Asn GTT gagcgccaaa cctttccttt0 0 82.24 58.9723.27 Both
chr3 289 96206141 96206214 Asn GTT tttctacatc agcattttaa0 0 82.24 58.9723.27 Both
chr3 294 96255348 96255421 Asn GTT gctcaccacc acagacagtt0 0 82.24 58.9723.27 Both
chr3 298 96301704 96301777 Asn GTT cacttcacat gtgccttttg0 0 82.24 58.9723.27 Both
chr3 750 96263134 96263061 Asn GTT gctcaccacc acagacagtt0 0 82.24 58.9723.27 Both
chr5 1043 150040650 150040577 Asn GTT aggcagctgt gcagcgttcc0 0 82.24 58.9723.27 Both
 
chr5 1609 101421964 101421893 Asp GTC ataaacatag agtgttctct0 0 59.67 45.7313.94 Eufind
chr2 510 113929103 113929174 Asp GTC agagtgcatt gcacgatagt0 0 60.46 35.7624.70 Both
chr10 851 92915794 92915723 Asp GTC actgtgcaat gtacaatgat0 0 72.92 48.3824.54 Both
chr1 1000 172995560 172995489 Asp GTC gtcggcgttg gcgtagcgtc0 0 72.92 48.3824.54 Both
chr1 1005 172967231 172967160 Asp GTC atcatggttg actagtgagt0 0 72.92 48.3824.54 Both
chr11 397 68854486 68854557 Asp GTC ttcagcttac aagtgctttt0 0 72.92 48.3824.54 Both
chr11 69 7769780 7769851 Asp GTC gtaggcgttg atgtagcgtc0 0 72.92 48.3824.54 Both
chr13 84 22003182 22003253 Asp GTC gttctcgttc tctggacaca0 0 72.92 48.3824.54 Both
chr13 979 22032259 22032188 Asp GTC cactgcctca agtgatctct0 0 72.92 48.3824.54 Both
chr13 981 22027437 22027366 Asp GTC aatgcttact aagatggcta0 0 72.92 48.3824.54 Both
chr1 707 173032502 173032573 Asp GTC actggtgtcg atacagtagc0 0 72.92 48.3824.54 Both
chr1 994 173010809 173010738 Asp GTC gtcggcgttg acgtagcgtc0 0 72.92 48.3824.54 Both
chr1 997 173003195 173003124 Asp GTC gtcggcgttg acgtagcgtc0 0 72.92 48.3824.54 Both
chr5 1314 125889457 125889386 Asp GTC gcacagcttg gctaacagtg0 0 72.92 48.3824.54 Both
chr5 1316 125886048 125885977 Asp GTC tcagctctct attgttaaga0 0 72.92 48.3824.54 Both
chr10 856 90644913 90644842 Asp GTC cccccacagc gttgtgaatt0 0 74.76 50.2124.55 Both
 
chr6 170 48155067 48155138 Cys GCA atgtcagcaa aataattgta0 0 55.85 36.6619.19 Both
chr6 177 48266536 48266605 Cys GCA gaagcagatg ttcttattgt0 0 56.48 39.8516.63 Eufind
chr6 1020 48228862 48228791 Cys GCA ttgtaccagt ttctcatatt0 0 58.02 42.9015.12 Both
chr6 1033 48090554 48090483 Cys GCA tgaagcagat cttattgtct0 0 58.93 49.129.81 Eufind
chr6 180 48291587 48291658 Cys GCA ttccttaaat ttcttttttt0 0 60.03 47.1712.86 Both
chr6 174 48252458 48252529 Cys GCA tgaagcagat tcttactgtc0 0 60.67 46.5714.10 Both
chr6 1015 48255534 48255463 Cys GCA ataaacaggt tgccaaaagt0 0 62.29 44.1018.19 Both
chr6 167 48136317 48136388 Cys GCA ctcaagccag gttggtaagc0 0 62.33 41.0621.27 Both
chr6 176 48261498 48261569 Cys GCA atgaagcaga ttctaaacat0 0 66.77 52.5514.22 Both
chr6 1034 48089580 48089509 Cys GCA cctataaaat ttgttaaata0 0 66.83 48.7918.04 Eufind
chr6 182 48306850 48306921 Cys GCA gctataaaat ttcttaaata0 0 66.85 48.6618.19 Both
chr6 1018 48238946 48238875 Cys GCA tgttactagt tttcatgtga0 0 67.15 53.0914.06 Both
chr6 162 48093355 48093426 Cys GCA acaaacaggt actacaagtt0 0 67.55 51.9815.57 Both
chr6 179 48290612 48290683 Cys GCA tgaagcagat tcttattgtc0 0 68.50 51.0817.42 Both
chr6 1023 48203150 48203079 Cys GCA acaaacaggt accacaagat0 0 68.53 53.7414.79 Both
chr6 1014 48258799 48258728 Cys GCA tgctactagt tttcttggat0 0 69.30 55.1014.20 Both
chr6 175 48253464 48253535 Cys GCA gctataaaat ttcttaaata0 0 69.62 50.6019.02 Both
chr11 1444 97631214 97631143 Cys GCA agcaaggtga ccatcttttg0 0 73.73 55.8117.92 Both
chr6 1005 48313602 48313531 Cys GCA tagtaccagt tatttatgtc0 0 74.20 55.0219.18 Both
chr6 1006 48304089 48304018 Cys GCA ataaacaggt actacaagct0 0 74.20 55.0219.18 Both
chr6 1008 48299832 48299761 Cys GCA ataaacaagt taccaaaagt0 0 74.20 55.0219.18 Both
chr6 1009 48287161 48287090 Cys GCA ataaagaggt actacaagct0 0 74.20 55.0219.18 Both
chr6 1010 48286178 48286107 Cys GCA tgctactagt tttcttggat0 0 74.20 55.0219.18 Both
chr6 1011 48282910 48282839 Cys GCA ataaacaagt taccaaaagt0 0 74.20 55.0219.18 Both
chr6 1012 48263088 48263017 Cys GCA atgaacaggt actacaagtt0 0 74.20 55.0219.18 Both
chr6 1013 48259777 48259706 Cys GCA ataaacaggt actacaagct0 0 74.20 55.0219.18 Both
chr6 1016 48249020 48248949 Cys GCA acaaacaggt atgcaagttt0 0 74.20 55.0219.18 Both
chr6 1019 48229841 48229770 Cys GCA acaaacaggt accacaagat0 0 74.20 55.0219.18 Both
chr6 1021 48218528 48218457 Cys GCA attagcatca atgcaagttt0 0 74.20 55.0219.18 Both
chr6 1022 48211792 48211721 Cys GCA attagcatta tttcatggga0 0 74.20 55.0219.18 Both
chr6 1024 48202173 48202102 Cys GCA taatatcgat tcctcagatt0 0 74.20 55.0219.18 Both
chr6 1025 48194386 48194315 Cys GCA tattagtatt actcatacct0 0 74.20 55.0219.18 Both
chr6 1027 48173164 48173093 Cys GCA tctcaggtca tccagtatat0 0 74.20 55.0219.18 Both
chr6 1030 48157521 48157450 Cys GCA atatacaaat actttttgtc0 0 74.20 55.0219.18 Both
chr6 1031 48106345 48106274 Cys GCA tgaagcagat ttctaaacat0 0 74.20 55.0219.18 Both
chr6 1032 48094998 48094927 Cys GCA tgaagcagat ttctaaacat0 0 74.20 55.0219.18 Both
chr6 161 48083936 48084007 Cys GCA ttgtaccaat tatttatgtc0 0 74.20 55.0219.18 Both
chr6 163 48104713 48104784 Cys GCA acaaacaggt gctacaagtt0 0 74.20 55.0219.18 Both
chr6 164 48110178 48110249 Cys GCA acaaacaggt actacaagtt0 0 74.20 55.0219.18 Both
chr6 166 48114100 48114171 Cys GCA ataaacaggt atgcaagttt0 0 74.20 55.0219.18 Both
chr6 168 48147025 48147096 Cys GCA gcatgaaggt tgcctgaatc0 0 74.20 55.0219.18 Both
chr6 171 48221925 48221996 Cys GCA acaaacaggt atgcaagttt0 0 74.20 55.0219.18 Both
chr6 172 48223679 48223750 Cys GCA tagtaccagt tatttatgtc0 0 74.20 55.0219.18 Both
chr6 173 48247432 48247503 Cys GCA tgaagcagat ttctaaacat0 0 74.20 55.0219.18 Both
chr6 178 48267514 48267585 Cys GCA gctataaaat ttcttaaata0 0 74.20 55.0219.18 Both
chr6 181 48305854 48305925 Cys GCA tgaagcagat tcttattgtc0 0 74.20 55.0219.18 Both
chr9 592 104302450 104302521 Cys GCA ccatgtcact gtacattctt0 0 74.20 55.0219.18 Both
chr6 1026 48174399 48174328 Cys GCA ataaacatct tcctttttta0 0 74.25 55.8318.42 Both
chr6 1029 48159908 48159837 Cys GCA ataagcaggt acttttctct0 0 74.26 55.0219.24 Both
chr6 1017 48243077 48243006 Cys GCA ataagcaggt atcacaaggt0 0 74.83 53.4121.42 Both
chr11 1442 97660291 97660220 Cys GCA gcgtcggtgc cagagtcttt0 0 77.18 59.2617.92 Both
chr17 458 71948611 71948682 Cys GCA agtagccacc tcctataatt0 0 77.65 58.4819.17 Both
chr9 593 104306386 104306457 Cys GCA tattggctat gggttaggct0 0 77.65 58.4819.17 Both
chr11 1432 97850308 97850237 Cys GCA tcagtacact cacggctact0 0 77.71 58.4719.24 Both
chr11 1433 97849631 97849560 Cys GCA taccggcaga agcaggctca0 0 77.71 58.4719.24 Both
chr11 791 97658386 97658457 Cys GCA taccgccaga tggtgggtgc0 0 77.71 58.4719.24 Both
chr6 157 47928996 47929067 Cys GCA tctgccagca tacaggccca0 0 77.71 58.4719.24 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr13 975 22088521 22088450 Gln CTG cagcctgtgt attagttttc0 0 63.63 43.7419.89 Both
chr3 309 97485382 97485453 Gln CTG ctgtgtgtag ttctctttaa0 0 69.34 47.7621.58 Both
chr3 297 96283314 96283385 Gln CTG attgcatatg tttctgttta0 0 72.91 51.3321.58 Both
chr3 753 96203053 96202982 Gln CTG aagggacatg ttggtgtcag0 0 72.91 51.3321.58 Both
chr3 756 96145150 96145079 Gln CTG tttatgtgta ctctatttac0 0 72.91 51.3321.58 Both
chr11 1817 68938180 68938109 Gln CTG cagaagaggg tagcattttg0 0 73.65 50.3623.29 Both
chr13 64 21264220 21264291 Gln CTG aaaaggcggt actttttttt0 0 73.65 50.3623.29 Both
chr13 982 22025901 22025830 Gln CTG aaagttgtgg agtttatttt0 0 73.65 50.3623.29 Both
chr9 342 64585853 64585924 Gln CTG cctccgtgct gctccctttt0 0 73.65 50.3623.29 Both
chr13 87 22012069 22012140 Gln CTG tttattgtga tagtagctat0 0 75.58 53.9921.59 Both
chrX 936 13436363 13436292 Gln TTG ctgccgctct ctcattgata0 0 57.25 38.9118.34 Both
chr11 630 86075670 86075741 Gln TTG agtagcagca ctttgaacct0 0 57.70 44.7412.96 Eufind
chr13 995 21360409 21360338 Gln TTG atcttttgtg ttaaaggctc0 0 65.84 45.8919.95 Both
chr13 113 23610919 23610990 Gln TTG cgttagcata catgacattt0 0 68.31 52.3116.00 Both
chr13 114 23611482 23611553 Gln TTG cgtcgtactc tctttccttt0 0 68.31 52.3116.00 Both
chr11 1493 95720557 95720486 Gln TTG gccgccagca cactgaacct0 0 73.77 50.8322.94 Both
 
chr3 622 123602176 123602105 Glu CTC aaactatcta ccatggtagt0 0 42.57 31.1111.46 Both
chr12 886 43516133 43516062 Glu CTC tattgaaact atactgtttt0 0 55.25 38.7616.49 Eufind
chr7 967 106692481 106692410 Glu CTC tttgggatgc gcctctcttc0 0 57.84 35.8821.96 Eufind
chr17 720 56231495 56231424 Glu CTC acaacgacgc gcctctcttc0 0 68.96 52.4216.54 Both
chr10 81 30530946 30531017 Glu CTC tcaggaagcc gcaatgtttt0 0 76.61 53.9422.67 Both
chr1 1002 172994366 172994295 Glu CTC gggccgacgc gcctctcttc0 0 76.61 53.9422.67 Both
chr11 1912 58115750 58115679 Glu CTC tactatctct gtacttgttt0 0 76.61 53.9422.67 Both
chr13 1001 21252725 21252654 Glu CTC actggcagtt gtgcagtttt0 0 76.61 53.9422.67 Both
chr1 709 173033174 173033245 Glu CTC ctcctatcac gtgctttttc0 0 76.61 53.9422.67 Both
chr1 996 173009608 173009537 Glu CTC gggccgacgc gcctctcttc0 0 76.61 53.9422.67 Both
chr1 999 173001994 173001923 Glu CTC gggccgacgc gcctctcttc0 0 76.61 53.9422.67 Both
chr3 303 96962008 96962079 Glu CTC tctcctaact atactgtttt0 0 76.61 53.9422.67 Both
chr3 745 96305441 96305370 Glu CTC ggcgctaact ataaattttt0 0 76.61 53.9422.67 Both
chr3 286 96150598 96150669 Glu TTC gttctgtccg ggcttttgac0 0 72.33 49.6622.67 Both
chr3 754 96191399 96191328 Glu TTC gttctgtccg ggcttttgac0 0 72.33 49.6622.67 Both
chr1 1547 34491728 34491657 Glu TTC tgccggcagc cagtattttt0 0 75.00 51.6923.31 Both
chr14 359 79881475 79881546 Glu TTC tagcagcact cagtgtcact0 0 75.00 51.6923.31 Both
chr13 105 23555404 23555475 Glu TTC gcatagcagt actcattgtt0 0 76.26 53.7222.54 Both
chr14 347 76552581 76552652 Glu TTC acttgtcgtc cgccaatatc0 0 76.26 53.7222.54 Both
chr7 337 65654685 65654756 Glu TTC tttcgtcagt cagcagcttt0 0 76.26 53.7222.54 Both
chr9 961 104311068 104310997 Glu TTC cagtatcagt cacaagatct0 0 76.26 53.7222.54 Both
 
chr11 205 48637230 48637303 Gly ACC gtaggtatgg aaaggtgaaa0 0 76.62 58.4118.21 Eufind
chr3 282 96115177 96115247 Gly CCC tgcatgggga agatctccct0 0 51.51 34.7316.78 Both
chr4 67 32317225 32317295 Gly CCC tggtgatggt atatggtctt0 0 70.39 56.8813.51 Both
chr3 287 96186834 96186904 Gly CCC atctacggga gtacctctct0 0 75.97 55.9220.05 Both
chr3 755 96155160 96155090 Gly CCC atctacggga gtacctctct0 0 75.97 55.9220.05 Both
chr3 752 96228026 96227956 Gly CCC tctcaagggt atgtggtctt0 0 76.37 56.3220.05 Both
chr17 113 26012033 26012103 Gly CCC tcgctcaaca tgttcttttt0 0 76.98 51.0525.93 Both
chr6 317 86353887 86353957 Gly CCC atcctcaaca tgtcttttct0 0 76.98 51.0525.93 Both
chr4 1314 132670481 132670411 Gly GCC gtggagtgaa cagctttctc0 0 62.70 54.098.61 Both
chr8 560 113586461 113586531 Gly GCC ttacagtaag tatatctctt0 0 73.70 53.6520.05 Both
chr1 1392 74863391 74863321 Gly GCC gtagctagtc ttgcttactt0 0 74.71 54.6620.05 Both
chr11 1819 68932366 68932296 Gly GCC ctccttgtct cagttctagc0 0 81.62 61.5720.05 Both
chr13 110 23609072 23609142 Gly GCC gtaacaagga ctctctcact0 0 81.62 61.5720.05 Both
chr13 77 21802449 21802519 Gly GCC aactaccgga ggtctcgttt0 0 81.62 61.5720.05 Both
chr1 699 172975116 172975186 Gly GCC agtttgccta cgatgcgtac0 0 81.62 61.5720.05 Both
chr2 1747 57034875 57034805 Gly GCC atatgtgctt cttgcctttt0 0 81.62 61.5720.05 Both
chr3 878 84033003 84032933 Gly GCC caactaagtg catctaaatt0 0 81.62 61.5720.05 Both
chr8 886 113155216 113155146 Gly GCC aacagctgga gagcttgttt0 0 81.62 61.5720.05 Both
chr8 887 113154523 113154453 Gly GCC cacagctgga gtagcaatcc0 0 81.62 61.5720.05 Both
chr1 702 172996762 172996832 Gly GCC aggagacagg gagtccagtc0 0 82.15 62.5819.57 Both
chr1 704 173004433 173004503 Gly GCC aggagacagg gagtccagtc0 0 82.15 62.5819.57 Both
chr1 706 173012007 173012077 Gly GCC aggagacagg gagtccagtc0 0 82.15 62.5819.57 Both
chr1 1001 172994901 172994830 Gly TCC cagcggtgca gcgtgcccac0 0 73.26 52.8320.43 Both
chr1 1004 172968199 172968128 Gly TCC tcgccgtgct aagttaaaat0 0 73.26 52.8320.43 Both
chr11 1824 68854851 68854780 Gly TCC tcttctgcat acggcaaacc0 0 73.26 52.8320.43 Both
chr1 708 173032887 173032958 Gly TCC ggttatcgct taacattttt0 0 73.26 52.8320.43 Both
chr1 995 173010150 173010079 Gly TCC cagcggtgca gcgtgcccac0 0 73.26 52.8320.43 Both
chr1 998 173002536 173002465 Gly TCC cagcggtgca gcgtgcccac0 0 73.26 52.8320.43 Both
chr3 746 96305003 96304932 Gly TCC tcgctaacct taaggttgtc0 0 73.26 52.8320.43 Both
 
chr1 717 173599570 173599642 His ATG ctgggtctgc ttgggactgg0 0 56.65 47.818.84 Eufind
chr3 293 96239895 96239966 His GTG tgtgtggtcc ttatcctctg0 0 61.18 33.7327.45 Both
chr2 1431 122203170 122203099 His GTG ccggtagctc ttgtggcaac0 0 64.63 37.1827.45 Both
chr2 1432 122201301 122201230 His GTG ctggtagctc ttgtggcaac0 0 64.63 37.1827.45 Both
chr2 586 122203704 122203775 His GTG ccggtagctc ttgtggcaac0 0 64.63 37.1827.45 Both
chr3 291 96213992 96214063 His GTG cacgtggctc gtattgtatt0 0 64.63 37.1827.45 Both
chr3 295 96256418 96256489 His GTG cgcgtggctc tgtcgtcctt0 0 64.63 37.1827.45 Both
chr3 747 96304360 96304289 His GTG ccggtggctc tttagtagta0 0 64.63 37.1827.45 Both
chr3 751 96262064 96261993 His GTG cgcgtggctc tgtcgtcctt0 0 64.63 37.1827.45 Both
chr4 1697 82265598 82265527 His GTG tcagtagctc ggaattgagg0 0 64.63 37.1827.45 Both
chr3 749 96267966 96267895 His GTG cgtgtggctt ctatcgtcct0 0 65.06 38.1626.90 Both
 
chr16 315 75434424 75434497 Ile AAT taaagaacct gcaaactgcc0 0 65.75 51.5814.17 Both
chr4 62 27831926 27831999 Ile AAT agacaggtct gggaagcaac0 0 78.27 58.1520.12 Both
chr13 100 23488929 23489002 Ile AAT tcttatgtct catatgtttt0 0 79.19 60.7518.44 Both
chr11 1823 68875895 68875822 Ile AAT tctcgtctct gtgtgcttat0 0 80.66 62.1718.49 Both
chr11 393 68850505 68850578 Ile AAT ccaagcagct aagctgaagc0 0 80.66 62.1718.49 Both
chr12 470 112083548 112083621 Ile AAT ttagccgtct ggggagtttg0 0 80.66 62.1718.49 Both
chr13 92 22121092 22121165 Ile AAT tccacgagct gtagggatta0 0 80.66 62.1718.49 Both
chr13 956 23530051 23529978 Ile AAT cttcaggtct gctggagttt0 0 80.66 62.1718.49 Both
chr13 968 23400994 23400921 Ile AAT tctcatgtct cacatatttt0 0 80.66 62.1718.49 Both
chr13 989 21973975 21973902 Ile AAT ttgtacatct gtggtagatt0 0 80.66 62.1718.49 Both
chr13 990 21947262 21947189 Ile AAT ctggcgacct gtaaactgct0 0 80.66 62.1718.49 Both
chr2 1506 118881962 118881889 Ile GAT ttattaacct gcaagctgcc0 0 52.90 42.5910.31 Both
chr1 583 155305794 155305866 Ile TAT ccctatgcct tgtggtgtgc0 0 59.10 40.6218.48 Eufind
chr13 987 21988900 21988807 Ile TAT gagaaagcat tgttttcttc21988862 21988843 67.58 39.3928.19 Both
chr13 969 23362385 23362290 Ile TAT tcctacggat ttgttttcat23362347 23362326 66.21 38.0228.19 Both
chr7 156 29158018 29158112 Ile TAT tgcggccgga cttctttttt29158056 29158076 68.50 40.3028.20 Both
chr17 516 84261284 84261376 Ile TAT ccacagcgga cgatcctttt84261322 84261340 68.11 39.9228.19 Both
 
chr16 4 3449838 3449909 Leu AAG ttctctttaa tcttcttttg0 0 32.73 26.765.97 Both
chr16 829 3012080 3012009 Leu AAG ttctctttaa tcttcttttg0 0 32.73 26.765.97 Both
chr19 2 3066556 3066627 Leu AAG ttctctttaa tcttcttttg0 0 32.73 26.765.97 Both
chr7 559 128061031 128061112 Leu AAG tcaacagctg aggcaggctt0 0 67.95 49.7418.21 Both
chr13 63 21262075 21262156 Leu AAG ctacatcaac acaggttact0 0 68.58 48.1320.45 Both
chr11 2021 48670557 48670476 Leu AAG tacacgtcga gtaacttttg0 0 69.84 50.1619.68 Both
chr13 62 21261905 21261986 Leu AAG cctcgacggg accggttttt0 0 69.84 50.1619.68 Both
chr14 188 51683558 51683639 Leu AAG cactctcact tctttgtttt0 0 69.84 50.1619.68 Both
chr13 998 21264811 21264706 Leu CAA gaggcggcat gctgtatttt21264773 21264751 71.76 48.0823.68 Both
chr13 65 21292073 21292177 Leu CAA tttctcgtgt cagtactctt21292111 21292131 68.92 44.8324.09 Both
chr13 85 22006707 22006812 Leu CAA tagagcgtgt cagttgcttt22006745 22006766 66.25 42.9223.33 Both
chr11 1911 58116082 58115976 Leu CAA ttcagcaagt caactccttt58116044 58116022 66.74 45.8020.94 Both
chr3 1026 24062029 24061947 Leu CAG tgtttagtag actgctatct0 0 59.68 30.3329.35 tRNAscan
chr8 168 39276255 39276337 Leu CAG tgttcgagca gcctcgcctt0 0 69.42 41.9327.49 Both
chr1 698 172968745 172968827 Leu CAG actaccatgt aatacttttt0 0 75.90 46.8929.01 Both
chr8 1008 97227986 97227904 Leu CAG gtttccagtt agttgctctt0 0 75.90 46.8929.01 Both
chr8 414 97227531 97227613 Leu CAG caactctcat gaattcctgt0 0 75.90 46.8929.01 Both
chr13 952 23545383 23545301 Leu CAG tatcctgtaa actgccatct0 0 77.22 46.8930.33 Both
chr1 701 172996115 172996197 Leu CAG ccaaaccgcc gcctcgcctt0 0 77.22 46.8930.33 Both
chr1 703 173003750 173003832 Leu CAG ccaaaccgcc gcctcgcctt0 0 77.22 46.8930.33 Both
chr1 705 173011364 173011446 Leu CAG ccaaaccgcc gcctcgcctt0 0 77.22 46.8930.33 Both
chr1 993 173032051 173031969 Leu CAG atgcaatgta aagttttgta0 0 77.22 46.8930.33 Both
chrX 462 157573066 157573148 Leu TAA cctcattcag ttagtgactg0 0 51.87 31.8620.01 Both
chr13 991 21939973 21939891 Leu TAA tgttatcagt tgtactgctc0 0 73.91 48.5025.41 Both
chr10 1316 12642451 12642369 Leu TAA gcacgcctgc aagttgctgt0 0 77.01 48.4028.61 Both
chr19 638 12085658 12085576 Leu TAA tctttcaggt aatgtgtttt0 0 80.01 46.6233.39 Both
chr7 861 127979074 127978993 Leu TAG acaaatggga catccctaag0 0 68.14 45.5422.60 Both
chr14 703 51702586 51702505 Leu TAG cagacagctt gtgttttctt0 0 70.94 48.7822.16 Both
chr11 401 68937743 68937824 Leu TAG cttccatgcg ggccagagtt0 0 72.19 50.8121.38 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr3 1 3123740 3123812 Lys CTT gagaggagtt agaagttatt0 0 50.41 29.3821.03 Both
chr16 267 47250659 47250731 Lys CTT ctattgagtt agatgttatt0 0 50.60 31.8518.75 Both
chr16 76 16854357 16854429 Lys CTT aaaaaaaaaa ccatctatag0 0 54.97 36.7118.26 Both
chr9 1514 14762949 14762877 Lys CTT tgagtggcag ccacctgttg0 0 56.84 43.5713.27 Both
chr11 1752 73950889 73950817 Lys CTT attacaaaca ggctgcagac0 0 57.68 29.9627.72 Both
chr13 1041 4223466 4223394 Lys CTT tctttctgcc ccaaatgttg0 0 58.04 48.759.29 Eufind
chr1 1268 112801396 112801324 Lys CTT aatcgtagct ccaatttgtt0 0 58.94 40.1518.79 Both
chr5 1627 98470181 98470109 Lys CTT tatatatatg ccatctttga0 0 60.02 41.1118.91 Both
chr3 2 3149493 3149565 Lys CTT gagatcaatt agatgctatt0 0 62.80 42.8919.91 Both
chr11 2023 48647457 48647385 Lys CTT ttcacacagc catggtaact0 0 80.47 57.8122.66 Both
chr13 103 23528209 23528281 Lys CTT ttgcacatgt caaattaact0 0 80.47 57.8122.66 Both
chr17 1000 23672371 23672299 Lys CTT agtgacagtc agatgttact0 0 80.47 57.8122.66 Both
chr17 82 23670929 23671001 Lys CTT agtgacagtc agatgttact0 0 80.47 57.8122.66 Both
chr17 84 23684327 23684399 Lys CTT tctcatcacc agtaattttg0 0 80.47 57.8122.66 Both
chr3 292 96232158 96232230 Lys CTT tttcagaagt catgcttttg0 0 80.47 57.8122.66 Both
chr3 748 96303507 96303435 Lys CTT gtgtctcaag cttccttttc0 0 80.47 57.8122.66 Both
chr12 790 72070179 72070107 Lys CTT aatcacatct gtgtttcttt0 0 80.72 58.2822.44 Both
chr9 1035 90021419 90021347 Lys CTT cataccagct gtttagtttt0 0 80.72 58.2822.44 Both
chrX 643 132730343 132730271 Lys CTT actacaagct gtttagtttt0 0 81.73 61.7619.97 Both
chr8 317 82433177 82433249 Lys TTT tattagagtt gctacacatt0 0 43.91 32.9510.96 Both
chr10 885 87292703 87292631 Lys TTT gatcttaaga ctcagttttt0 0 61.23 50.5910.64 Eufind
chr13 89 22063657 22063729 Lys TTT ctatgtgaga ctgattctca0 0 78.73 57.3721.36 Both
chr13 83 21999809 21999881 Lys TTT ctttctaaga gaaaggtgat0 0 83.31 61.9521.36 Both
chr7 1276 29579079 29579007 Lys TTT tgactgaaga gaaagatggt0 0 83.31 61.9521.36 Both
chr11 1816 68938750 68938678 Lys TTT tttgctaaga cttagctttt0 0 83.80 62.7821.02 Both
chr1 1184 134930976 134930904 Lys TTT ccctcagagc gctacaaatt0 0 83.80 62.7821.02 Both
chr13 1000 21260016 21259944 Lys TTT acccctcaga ctactgtttt0 0 83.80 62.7821.02 Both
chr1 485 134930539 134930611 Lys TTT ttccaccagg cttgtctttt0 0 83.80 62.7821.02 Both
chr19 107 12080529 12080601 Lys TTT gcagccatga ctgctatttt0 0 83.80 62.7821.02 Both
chr19 639 12084258 12084186 Lys TTT ctcgctaaga gaagttgttt0 0 83.80 62.7821.02 Both
 
chr11 1132 121825448 121825376 Met CAT tactatgggt aactcaggtt0 0 54.05 47.806.25 Both
chr13 82 21998980 21999051 Met CAT taccttatat gtttgcattt0 0 62.33 37.9224.41 Eufind
chr15 876 69227124 69227053 Met CAT tgaaggcatc acttgtcttt0 0 62.68 39.9822.70 Eufind
chr15 355 88471962 88472034 Met CAT aatgacgggt gccccagtgt0 0 67.55 49.3818.17 Eufind
chr13 108 23591949 23592020 Met CAT tgtctagagg gagctttttt0 0 68.98 40.9628.02 Both
chr13 111 23609561 23609632 Met CAT gctgcgcgtc acttgtcttt0 0 68.98 40.9628.02 Both
chr13 78 21802863 21802934 Met CAT aggcagctct aggtgcagct0 0 68.98 40.9628.02 Both
chr13 90 22066901 22066972 Met CAT ttcacgttct tgagatattt0 0 68.98 40.9628.02 Both
chr13 947 23622288 23622217 Met CAT ctctttaagt tctggacttt0 0 68.98 40.9628.02 Both
chr13 983 22023109 22023038 Met CAT atctcgcagc cagagctttt0 0 68.98 40.9628.02 Both
chr3 792 90279853 90279782 Met CAT accagtgggt tcggaggctt0 0 68.98 40.9628.02 Both
chr13 99 23409335 23409407 Met CAT aggcctcgta gtttttgcta0 0 74.21 51.2922.92 Both
chr13 994 21418658 21418586 Met CAT aatactcagt gatgttttag0 0 75.13 53.9221.21 Both
chr13 61 21259473 21259545 Met CAT agcaccacgt gttgtttttt0 0 76.58 56.4420.14 Both
chr13 999 21261628 21261556 Met CAT gacaacgggt acctcagctt0 0 76.58 56.4420.14 Both
chr15 913 57807610 57807538 Met CAT gcacataggt caatactttt0 0 79.85 59.4920.36 Both
chr8 783 124103201 124103129 Met CAT ctgctaagga tcctgcattg0 0 79.85 59.4920.36 Both
chr10 1101 62657080 62656988 Met CAT tcttccaggt gactaacact62657042 62657024 53.86 45.917.95 Both
 
chr13 988 21974826 21974754 Phe GAA ttgttaccga aaggttcatt0 0 82.45 60.8421.61 Both
chr19 108 12083035 12083107 Phe GAA tattatctgt aagttttatt0 0 82.59 59.4423.15 Both
chr10 961 79711781 79711709 Phe GAA acagcgcgtc agtgttttta0 0 84.19 62.5821.61 Both
chr13 60 21253274 21253346 Phe GAA gctgggcgtg accgcgtgca0 0 84.19 62.5821.61 Both
chr14 457 118488819 118488747 Phe GAA caggcacagc gttaactttt0 0 84.19 62.5821.61 Both
chr19 106 12076726 12076798 Phe GAA ttcaagcaca gtgattttat0 0 84.19 62.5821.61 Both
chr5 1315 125886497 125886425 Phe GAA agcaacagcc gctcgtactt0 0 84.19 62.5821.61 Both
 
chr1 284 78294370 78294441 Pro AGG ggaacgttaa tcttctacat0 0 48.57 36.6111.96 Both
chr13 957 23528934 23528863 Pro AGG gtttacatct aagtttttat0 0 75.92 53.8522.07 Both
chr14 705 51684560 51684489 Pro AGG gatacccatc tacttttgaa0 0 75.92 53.8522.07 Both
chr1 672 167571765 167571836 Pro AGG gctacacatc tgtagctttt0 0 75.92 53.8522.07 Both
chr3 93 51163329 51163400 Pro AGG tgccttacgt aattttatct0 0 75.92 53.8522.07 Both
chr6 46 29338824 29338895 Pro AGG aaccgccagt tgcttatcat0 0 75.92 53.8522.07 Both
chr7 977 105964257 105964186 Pro AGG tactcacagc aaacattttg0 0 75.92 53.8522.07 Both
chr1 1022 167572473 167572402 Pro CGG caccgagagc tggttttact0 0 76.52 54.4622.06 Both
chr11 396 68853887 68853958 Pro CGG gtcatacgtc catcttactt0 0 76.52 54.4622.06 Both
chr17 83 23677882 23677953 Pro CGG gcagttgtgt tgaatggggt0 0 76.52 54.4622.06 Both
chr17 998 23675804 23675733 Pro TGG aaacaatgct agtaccaagg0 0 52.48 29.3423.14 Both
chr11 372 67104641 67104712 Pro TGG aacactagat cccttttcct0 0 59.18 42.8816.30 Both
chrX 931 14279813 14279742 Pro TGG tgcttccagt agctactttt0 0 61.11 39.3321.78 Both
chr11 207 48669782 48669853 Pro TGG cacatcagct aagcatttta0 0 76.15 54.0922.06 Both
chr14 192 51710322 51710393 Pro TGG gctaccacat tgtacttttt0 0 76.15 54.0922.06 Both
chr17 996 23683514 23683443 Pro TGG ttgtcaccgt agttttttag0 0 76.15 54.0922.06 Both
chr3 92 51162276 51162347 Pro TGG taccctcagc agctactttt0 0 76.15 54.0922.06 Both
chr7 441 105963925 105963996 Pro TGG cctagcagct cacttttcct0 0 76.24 54.2322.01 Both
 
chr7 86 19886593 19886678 SeC(e) TCA agctcctttc gggagtatct0 0 75.67 0.000.00 Eufind
 
chr5 13 5627681 5627751 SeC TCA atccctggat agatgttatt0 0 53.42 0.000.00 Eufind
 
chrX 493 163347746 163347665 Ser AGA aaaataagca gtcaaaagga0 0 52.84 32.8220.02 Both
chr11 394 68850979 68851060 Ser AGA cagaggttct tctaggattt0 0 88.01 56.9031.11 Both
chr13 86 22011084 22011165 Ser AGA agttccagct tcatggtctg0 0 88.01 56.9031.11 Both
chr13 88 22019726 22019807 Ser AGA ttaattccat gtaatcttat0 0 88.01 56.9031.11 Both
chr13 950 23592907 23592826 Ser AGA tactgcactt attgtgggtt0 0 88.01 56.9031.11 Both
chr13 978 22032864 22032783 Ser AGA ctctattcat ggctctttta0 0 88.01 56.9031.11 Both
chr4 16 10801211 10801292 Ser AGA agcatcacca gaagggaatg0 0 88.01 56.9031.11 Both
chr13 980 22029044 22028963 Ser AGA actatggtct ggtgttttgt0 0 88.50 57.3931.11 Both
chr5 1135 144108871 144108745 Ser AGA gtgaggggct aaaatgtcct144108835 144108785 21.10 10.5510.55 Both
chr13 972 22114369 22114288 Ser CGA gctctggtta taagaaagct0 0 86.89 57.2529.64 Both
chr10 688 127895601 127895520 Ser CGA agttttggga gcagtttttc0 0 89.14 63.5025.64 Both
chr11 400 68924421 68924502 Ser CGA gccgcacgcg ctagtagttt0 0 92.09 62.9129.18 Both
chr1 791 183986139 183986220 Ser GCT aaagtcaggg gaagcggctt0 0 64.07 45.5918.48 Both
chr13 992 21584795 21584714 Ser GCT ttcttcacag actgacaaac0 0 84.39 52.3232.07 Both
chr11 1821 68876625 68876544 Ser GCT gagtcgtgtg tctgtagctt0 0 85.34 57.7727.57 Both
chr13 115 23613739 23613820 Ser GCT cagtaggtat ttcagtttac0 0 85.34 57.7727.57 Both
chr13 970 22142636 22142555 Ser GCT tgcatgctct gtctgggtct0 0 85.34 57.7727.57 Both
chr19 711 5038385 5038304 Ser GCT tcgtgtgtgg gtcctgtttt0 0 85.83 58.2527.58 Both
chr2 1509 118872567 118872486 Ser GCT tagcttctgg aaagtgtctt0 0 86.00 55.4630.54 Both
chr13 976 22086140 22086059 Ser GCT tggcagagag tctccatatt0 0 86.80 59.2227.58 Both
chr11 832 100399472 100399544 Ser GGA gccaagcaca gtgattttat0 0 70.77 52.4218.35 Both
chr13 112 23610015 23610096 Ser TGA acgcgctctt tgaatgtatt0 0 88.73 57.6231.11 Both
chr13 984 22016885 22016804 Ser TGA tagaggaaag gttttaccag0 0 88.73 57.6231.11 Both
chr10 1095 62892305 62892224 Ser TGA tttctccgta gaagcgggtg0 0 90.86 62.3328.53 Both
 
chr13 79 21887668 21887750 Sup TTA tgctatcagt ttagtgaccg0 0 66.56 40.3826.18 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr13 971 22122042 22121969 Thr AGT cctgaagagg ctgattgttt0 0 79.48 56.7122.77 Both
chr14 628 59437063 59436990 Thr AGT ggaggggggc gagtgcttgc0 0 79.70 58.2721.43 Both
chr13 996 21341136 21341063 Thr AGT tctttgtaag ttaggagact0 0 80.06 59.7120.35 Both
chr13 81 21947890 21947963 Thr AGT ctccagttct tttcttcttt0 0 81.31 61.7519.56 Both
chr11 399 68923967 68924040 Thr AGT cattctcgtt ggtttatgtg0 0 81.60 62.0019.60 Both
chr13 104 23542491 23542564 Thr AGT aaagcgtgtt ttttgtggtt0 0 83.05 63.4919.56 Both
chr11 1822 68876319 68876246 Thr AGT acgtcacgta ttgtggtttc0 0 84.06 64.4519.61 Both
chr11 395 68851355 68851428 Thr AGT ttttgccact ttgtatgccc0 0 84.06 64.4519.61 Both
chr7 1213 36019862 36019789 Thr AGT ccgtgcgggc gagtgctacc0 0 84.06 64.4519.61 Both
chr18 633 46446154 46446083 Thr CGT gtacactgct tccccctccc0 0 26.36 13.6112.75 Both
chr13 72 21356449 21356522 Thr CGT tctttcaggt ggctgcactt0 0 78.56 62.3416.22 Both
chr11 550 79518152 79518223 Thr CGT tcggctgtca gcgtttggaa0 0 79.77 59.8819.89 Both
chr13 75 21414682 21414755 Thr CGT gccacagcgt tctgttttca0 0 80.32 60.3919.93 Both
chr16 50 13437416 13437487 Thr CGT cctcaacgca gccctctttc0 0 80.42 57.5722.85 Both
chr14 190 51708325 51708397 Thr TGT tgatctgtgt gagtctacct0 0 78.79 56.3622.43 Both
chr11 206 48667121 48667193 Thr TGT atttgtgact taaggttact0 0 79.46 56.9222.54 Both
chr14 704 51684915 51684843 Thr TGT cgcaggtgag tcagcttctt0 0 79.46 56.9222.54 Both
chr13 73 21367825 21367898 Thr TGT tacagcagtt atcttttttc0 0 85.34 65.4119.93 Both
 
chr10 1282 23496960 23496889 Trp CCA atgttggagt tgaatacctg0 0 66.12 52.4913.63 Eufind
chr10 857 90644228 90644157 Trp CCA agcccagcag tagtttttcg0 0 71.65 49.8521.80 Both
chr13 107 23589975 23590046 Trp CCA cttcttgggt gtgttttatg0 0 74.00 52.2121.79 Both
chr13 109 23598388 23598459 Trp CCA ccgcagctgt agtgttttgg0 0 74.00 52.2121.79 Both
chr11 1880 61221489 61221418 Trp CCA agcttgctgt agttaggttt0 0 74.80 53.0021.80 Both
chr11 1820 68877068 68876997 Trp CCA gtggccggcc gctctttttt0 0 74.81 54.9419.87 Both
chr11 398 68855328 68855399 Trp CCA gccacaggga tctgtgttct0 0 74.81 54.9419.87 Both
chr11 1849 62559588 62559517 Trp CCA atgtatcaat tgagtacctg0 0 76.45 54.6621.79 Both
 
chr3 27 19528355 19528447 Tyr GTA ttcttgtgtc gacagtaatg19528392 19528411 70.98 44.5726.41 Both
chr3 28 19528782 19528870 Tyr GTA cttgccgctc aagagcttgc19528819 19528834 73.00 46.5926.41 Both
chr13 961 23517603 23517515 Tyr GTA tgggcgtctt acgatctttt23517566 23517551 79.16 52.7526.41 Both
chr13 101 23518374 23518461 Tyr GTA tcagcgtctt atgatctttt23518411 23518425 78.12 51.7126.41 Both
chr13 960 23519049 23518964 Tyr GTA tatatatctc ggtgcctttt23519012 23519000 78.99 52.5826.41 Both
chr13 959 23520695 23520607 Tyr GTA atttctgagg agggagtgtt23520658 23520643 65.73 48.1617.57 Both
chr13 958 23524946 23524859 Tyr GTA acacgtggat acccttgttt23524909 23524895 78.61 52.2126.40 Both
chr13 106 23558945 23559034 Tyr GTA tacatggtat ggtctgtttt23558982 23558998 77.38 50.9726.41 Both
chr5 109 31190456 31190544 Tyr GTA cgcagcgggg cttcgtgcac31190493 31190508 78.79 52.3826.41 Both
chr14 191 51709164 51709253 Tyr GTA cttgtgcttc gtagcctgtc51709201 51709217 74.14 47.7326.41 Both
 
chr4 1183 138986492 138986421 Val AAC aaagatagct aaaggaaaca0 0 64.06 43.6220.44 Eufind
chr13 965 23493014 23492942 Val AAC atcttggggt tttttttttt0 0 84.35 61.2223.13 Both
chr13 974 22107732 22107660 Val AAC ccgcgtgggt cgttatattt0 0 85.07 59.8825.19 Both
chr13 93 23377270 23377342 Val AAC tcttgagggt ttactttttt0 0 85.09 60.2524.84 Both
chr13 962 23505189 23505117 Val AAC ggctgtgggt tggttgcttt0 0 85.09 60.2524.84 Both
chr13 95 23390650 23390722 Val AAC agttcagggt gtgcctttct0 0 85.92 60.3025.62 Both
chr11 208 48670139 48670211 Val AAC taagccgtga agacacttgt0 0 86.79 61.6025.19 Both
chr3 48 30500192 30500264 Val AAC gtgcaaccaa tatcttttaa0 0 86.79 61.6025.19 Both
chr3 928 59278919 59278848 Val CAC cttacatgtt actaagctta0 0 61.96 35.8226.14 Both
chr13 964 23504018 23503946 Val CAC cacctgtcgt tttctacttt0 0 69.25 55.8113.44 Both
chr17 392 59208131 59208203 Val CAC ttttcagtga gtttgatatt0 0 71.41 59.4511.96 Eufind
chr13 97 23391991 23392063 Val CAC cttgctgtgt acacttgtca0 0 84.96 61.8223.14 Both
chr6 10 10050371 10050443 Val CAC attgaatgtg agtagtctgg0 0 86.14 60.1725.97 Both
chr11 204 48632044 48632116 Val CAC agaatgtgta acttttagac0 0 87.39 62.2025.19 Both
chr13 91 22118417 22118489 Val CAC ccgcggtgtt atgactcttt0 0 87.39 62.2025.19 Both
chr13 954 23538083 23538011 Val CAC catccagcga gtttggtact0 0 87.39 62.2025.19 Both
chr1 710 173041574 173041646 Val CAC ttgccagcca gcaactttgt0 0 87.39 62.2025.19 Both
chr3 284 96136663 96136735 Val CAC ctcccaggtg agcagtcttt0 0 87.39 62.2025.19 Both
chr13 98 23399498 23399570 Val CAC gggtcagagg gtactgtttt0 0 87.78 62.9424.84 Both
chr6 651 135217866 135217793 Val GAC gaaggaggtt catggctaca0 0 29.47 24.475.00 Both
chr19 109 12086421 12086493 Val TAC tcctccgccc cgtggtgtgc0 0 82.67 57.6325.04 Both
chr19 110 12086756 12086828 Val TAC tgtggcacgt gtgtaacttt0 0 82.67 57.6325.04 Both
chrX 459 157204042 157204114 Val TAC ccttcgtggt tagctgcaaa0 0 82.67 57.6325.04 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.