GtRNAdb

tRNAscan-SE Analysis of Medicago truncatula (March 2009 Version 3.0)

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA581
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)5
tRNAs with undetermined
or unknown isotypes
7
Predicted pseudogenes132
Total tRNAs726


Intron Summary

tRNAs with introns
40
Ala
TGC
1
Ser
GCT
1
Leu
TAA
2
Asn
ATT
1
Lys
TTT
2
Glu
TTC
3
Gln
TTG
2
Ile
TAT
4
Met
CAT
13
Tyr
ATA
1
Tyr
GTA
9
SelCys
TCA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
25
GGC
 
CGC
3
TGC
16
44
GlyACC
1
GCC
23
CCC
3
TCC
15
42
ProAGG
7
GGG
 
CGG
1
TGG
11
19
ThrAGT
10
GGT
4
CGT
1
TGT
10
25
ValAAC
17
GAC
3
CAC
7
TAC
7
34

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
12
GGA
2
CGA
2
TGA
8
ACT
 
GCT
15
 
 
 
 
39
ArgACG
12
GCG
 
CCG
3
TCG
5
 
 
 
 
CCT
6
TCT
8
34
LeuAAG
9
GAG
 
CAG
4
TAG
10
 
 
 
 
CAA
14
TAA
7
44

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
26
 
 
 
 
26
AsnATT
9
GTT
28
 
 
 
 
37
Lys 
 
 
 
CTT
16
TTT
18
34
AspATC
 
GTC
28
 
 
 
 
28
Glu 
 
 
 
CTC
11
TTC
19
30
HisATG
 
GTG
17
 
 
 
 
17
Gln 
 
 
 
CTG
5
TTG
17
22

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
19
GAT
 
 
 
TAT
10
29
Met 
 
 
 
CAT
40
 
 
40
TyrATA
1
GTA
12
 
 
 
 
13
Supres 
 
 
 
CTA
 
TTA
5
5
CysACA
 
GCA
10
 
 
 
 
10
Trp 
 
 
 
CCA
14
 
 
14
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.