GtRNAdb

tRNAscan-SE Analysis of Mycobacterium bovis

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
Mycobacterium_bovis_AF2122/97 1 10887 10963 Ile GAT    0 0 88.31 65.7322.58 Both
Mycobacterium_bovis_AF2122/97 2 11112 11187 Ala TGC    0 0 91.66 72.2419.42 Both
Mycobacterium_bovis_AF2122/97 3 25625 25710 Leu CAG    0 0 64.37 40.5923.78 Both
Mycobacterium_bovis_AF2122/97 4 659352 659435 Tyr GTA    0 0 60.56 32.7827.78 Both
Mycobacterium_bovis_AF2122/97 5 732730 732802 Thr GGT    0 0 77.85 52.6625.19 Both
Mycobacterium_bovis_AF2122/97 6 732839 732915 Met CAT    0 0 89.68 68.5321.15 Both
Mycobacterium_bovis_AF2122/97 7 734760 734832 Trp CCA    0 0 79.38 56.1823.20 Both
Mycobacterium_bovis_AF2122/97 8 924829 924905 Glu TTC    0 0 59.25 36.5722.68 Both
Mycobacterium_bovis_AF2122/97 9 924940 925016 Asp GTC    0 0 95.56 76.7418.82 Both
Mycobacterium_bovis_AF2122/97 10 925043 925119 Phe GAA    0 0 90.33 68.8121.52 Both
Mycobacterium_bovis_AF2122/97 11 1113962 1114037 Ala CGC    0 0 92.08 70.6821.40 Both
Mycobacterium_bovis_AF2122/97 12 1177844 1177917 Leu TAA    0 0 63.13 45.0218.11 Both
Mycobacterium_bovis_AF2122/97 13 1510763 1510846 Leu TAG    0 0 63.59 33.2530.34 Both
Mycobacterium_bovis_AF2122/97 14 1931953 1932026 Pro GGG    0 0 79.83 58.4421.39 Both
Mycobacterium_bovis_AF2122/97 15 2382501 2382589 Leu GAG    0 0 60.27 30.2929.98 Both
Mycobacterium_bovis_AF2122/97 16 2733704 2733774 Gly TCC    0 0 74.56 54.0220.54 Both
Mycobacterium_bovis_AF2122/97 17 2760978 2761051 Arg TCT    0 0 69.26 48.4020.86 Both
Mycobacterium_bovis_AF2122/97 18 2794651 2794726 His GTG    0 0 82.48 62.6419.84 Both
Mycobacterium_bovis_AF2122/97 19 2802291 2802363 Lys CTT    0 0 83.50 60.1023.40 Both
Mycobacterium_bovis_AF2122/97 20 2937215 2937290 Gly GCC    0 0 89.46 67.6421.82 Both
Mycobacterium_bovis_AF2122/97 21 2937317 2937390 Cys GCA    0 0 76.31 52.4223.89 Both
Mycobacterium_bovis_AF2122/97 22 2937404 2937478 Val GAC    0 0 87.89 63.8224.07 Both
Mycobacterium_bovis_AF2122/97 23 4063888 4063964 Pro CGG    0 0 76.17 53.5522.62 Both
Mycobacterium_bovis_AF2122/97 24 4105805 4105893 Ser GGA    0 0 65.42 41.9723.45 Both
Mycobacterium_bovis_AF2122/97 25 4158962 4158876 Ser TGA    0 0 65.11 34.0831.03 Both
Mycobacterium_bovis_AF2122/97 26 4153350 4153262 Ser GCT    0 0 56.66 24.1432.52 Both
Mycobacterium_bovis_AF2122/97 27 4153231 4153159 Arg ACG    0 0 74.09 53.6720.42 Both
Mycobacterium_bovis_AF2122/97 28 4135511 4135422 Ser CGA    0 0 68.38 32.2736.11 Both
Mycobacterium_bovis_AF2122/97 29 4018674 4018599 Thr CGT    0 0 91.14 64.5526.59 Both
Mycobacterium_bovis_AF2122/97 30 3513978 3513902 Met CAT    0 0 88.77 65.3523.42 Both
Mycobacterium_bovis_AF2122/97 31 3388459 3388387 Ala GGC    0 0 82.28 62.1120.17 Both
Mycobacterium_bovis_AF2122/97 32 3305290 3305219 Gln CTG    0 0 55.97 27.1928.78 Both
Mycobacterium_bovis_AF2122/97 33 3305179 3305104 Glu CTC    0 0 62.17 39.7622.41 Both
Mycobacterium_bovis_AF2122/97 34 2937030 2936956 Val CAC    0 0 80.53 57.5622.97 Both
Mycobacterium_bovis_AF2122/97 35 2733567 2733491 Pro TGG    0 0 89.79 67.9221.87 Both
Mycobacterium_bovis_AF2122/97 36 2597076 2597004 Asn GTT    0 0 78.73 54.8823.85 Both
Mycobacterium_bovis_AF2122/97 37 2559432 2559359 Met CAT    0 0 90.06 73.3616.70 Both
Mycobacterium_bovis_AF2122/97 38 2489817 2489743 Val TAC    0 0 79.93 59.3820.55 Both
Mycobacterium_bovis_AF2122/97 39 1813454 1813378 Leu CAA    0 0 56.45 34.7221.73 Both
Mycobacterium_bovis_AF2122/97 40 1444314 1444239 Arg CCG    0 0 78.92 58.8320.09 Both
Mycobacterium_bovis_AF2122/97 41 1138594 1138523 Gln TTG    0 0 49.46 20.9428.52 Both
Mycobacterium_bovis_AF2122/97 42 1025859 1025787 Arg CCT    0 0 74.23 50.1824.05 Both
Mycobacterium_bovis_AF2122/97 43 924705 924630 Lys TTT    0 0 82.20 64.4417.76 Both
Mycobacterium_bovis_AF2122/97 44 852903 852829 Thr TGT    0 0 77.79 54.4723.32 Both
Mycobacterium_bovis_AF2122/97 45 387304 387231 Gly CCC    0 0 73.32 51.8621.46 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.