GtRNAdb

tRNAscan-SE Analysis of Nomascus leucogenys (Northern White-Cheeked Gibbon) (GGSC Nleu1.0 Jan 2010)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA386
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes0
Total tRNAs388


Intron Summary

tRNAs with introns
29
Arg
TCT
5
Leu
AAG
1
Leu
CAA
5
Ile
TAT
5
Tyr
GTA
13


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
17
GGC
 
CGC
5
TGC
10
32
GlyACC
 
GCC
13
CCC
5
TCC
6
24
ProAGG
8
GGG
 
CGG
4
TGG
4
16
ThrAGT
10
GGT
 
CGT
5
TGT
5
20
ValAAC
10
GAC
 
CAC
10
TAC
6
26

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
10
GGA
 
CGA
4
TGA
3
ACT
 
GCT
8
 
 
 
 
25
ArgACG
7
GCG
 
CCG
3
TCG
7
 
 
 
 
CCT
5
TCT
6
28
LeuAAG
8
GAG
 
CAG
6
TAG
3
 
 
 
 
CAA
5
TAA
5
27

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
8
 
 
 
 
8
AsnATT
3
GTT
15
 
 
 
 
18
Lys 
 
 
 
CTT
17
TTT
16
33
AspATC
 
GTC
9
 
 
 
 
9
Glu 
 
 
 
CTC
6
TTC
10
16
HisATG
 
GTG
12
 
 
 
 
12
Gln 
 
 
 
CTG
10
TTG
8
18

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
11
GAT
1
 
 
TAT
5
17
Met 
 
 
 
CAT
14
 
 
14
TyrATA
 
GTA
13
 
 
 
 
13
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
1
GCA
21
 
 
 
 
22
Trp 
 
 
 
CCA
8
 
 
8
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.