GtRNAdb

tRNAscan-SE Analysis of Nostoc sp

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA66
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes2
Total tRNAs69


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
1
CGC
1
TGC
5
7
GlyACC
 
GCC
1
CCC
1
TCC
2
4
ProAGG
 
GGG
1
CGG
1
TGG
2
4
ThrAGT
 
GGT
1
CGT
1
TGT
2
4
ValAAC
 
GAC
1
CAC
 
TAC
2
3

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
1
CGA
2
TGA
1
ACT
 
GCT
1
 
 
 
 
5
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
2
6
LeuAAG
 
GAG
2
CAG
1
TAG
2
 
 
 
 
CAA
2
TAA
1
8

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
2
 
 
 
 
2
AsnATT
 
GTT
3
 
 
 
 
3
Lys 
 
 
 
CTT
1
TTT
2
3
AspATC
 
GTC
1
 
 
 
 
1
Glu 
 
 
 
CTC
 
TTC
1
1
HisATG
 
GTG
1
 
 
 
 
1
Gln 
 
 
 
CTG
1
TTG
2
3

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
3
 
 
TAT
 
3
Met 
 
 
 
CAT
4
 
 
4
TyrATA
 
GTA
2
 
 
 
 
2
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
1
 
 
 
 
1
Trp 
 
 
 
CCA
1
 
 
1
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.