GtRNAdb

tRNAscan-SE Analysis of Novosphingobium aromaticivorans DSM 12444

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 7 1193066 1193141 Ala CGC taccgggaac ggtatcatcg0 0 82.04 66.4015.64  
chr 8 1371021 1371096 Ala GGC atggaagatt tccactatcg0 0 87.77 70.5617.21  
chr 35 2862209 2862134 Ala TGC gaattggttg agccgcggca0 0 94.08 76.0718.01  
chr 38 2856476 2856401 Ala TGC gaattggttg agccgcggca0 0 94.08 76.0718.01  
chr 41 2850743 2850668 Ala TGC gaattggttg agccgcggca0 0 94.08 76.0718.01  
 
chr 13 2019859 2019935 Arg ACG gcgtctcccg ctcccccttg0 0 84.36 56.8027.56  
chr 14 2019998 2020074 Arg ACG ttgttggtgg accaacaaac0 0 84.36 56.8027.56  
chr 2 251494 251570 Arg CCG gaacggccat cttcccttcg0 0 88.56 64.7223.84  
chr 44 2144495 2144419 Arg CCT gggagcgcgg ttttccggca0 0 90.84 71.0419.80  
chr 23 2697099 2697175 Arg TCT gacacggcgc tttccgcaga0 0 81.34 61.4219.92  
 
chr 17 2105462 2105536 Asn GTT ccggggctgc tttttcttca0 0 80.97 52.4028.57  
 
chr 45 2090044 2089968 Asp GTC ccaacggcga ttgggatgat0 0 92.83 78.8114.02  
chr 46 2089659 2089583 Asp GTC caaggggcac ccttgggaat0 0 92.83 78.8114.02  
 
chr 4 546809 546882 Cys GCA ctgcgatcga cacatattat0 0 72.25 55.1517.10  
 
chr 3 516668 516741 Gln CTG cgcctcacgt aaacttccct0 0 57.08 27.2429.84  
chr 25 2804473 2804547 Gln TTG cgcctcctgc gcggaaatcc0 0 77.12 51.7325.39  
 
chr 22 2415412 2415486 Glu CTC cttaccaagt ctctcgcctt0 0 65.09 42.0523.04  
chr 21 2415278 2415352 Glu TTC caagcccagt ttttctcctt0 0 65.72 42.6823.04  
 
chr 33 3237155 3237082 Gly CCC tctcgcccgg gcgcagaaat0 0 80.56 63.1017.46  
chr 56 284674 284600 Gly GCC aaacgcacga agtttccgaa0 0 90.44 69.3221.12  
chr 55 665453 665380 Gly TCC gactgaaaat gcctcttttc0 0 77.63 58.4419.19  
 
chr 11 1431862 1431938 His GTG gcgatatgtg ttttctcctc0 0 88.20 65.7022.50  
 
chr 34 2862304 2862228 Ile GAT gaggcaggtg tgcattttga0 0 90.60 70.9319.67  
chr 37 2856571 2856495 Ile GAT gaggcaggtg tgcattttga0 0 90.60 70.9319.67  
chr 40 2850838 2850762 Ile GAT gaggcaggtg tgcattttga0 0 90.60 70.9319.67  
 
chr 47 2075626 2075543 Leu CAA gtgcccgcgt ttccttcggt0 0 72.49 33.9338.56  
chr 29 3300661 3300747 Leu CAG tcgcctccgt tttttcttgt0 0 71.51 43.1628.35  
chr 5 742029 742115 Leu GAG gtctgatttt tcaccagtag0 0 71.72 35.2836.44  
chr 1 163991 164075 Leu TAA gggcgcgcat gcaggcccaa0 0 68.20 44.8823.32  
chr 32 3277139 3277055 Leu TAG ttcgccggat gtccgcgcgc0 0 76.24 49.1727.07  
 
chr 19 2272437 2272512 Lys CTT ctgatggcat tccgcttccc0 0 94.96 68.9925.97  
chr 20 2272556 2272631 Lys CTT gcaagggcac ctttctcctt0 0 94.96 68.9925.97  
chr 31 3312735 3312660 Lys TTT gaactcgggc aaaatcaatg0 0 95.18 74.5820.60  
 
chr 49 1394378 1394303 Met CAT cgttcgtgat tcaccccgct0 0 86.09 68.2017.89  
chr 36 2858630 2858554 Met CAT caaaccccaa aattaggggt0 0 86.34 59.4626.88  
chr 39 2852897 2852821 Met CAT caaaccccaa aattaggggt0 0 86.34 59.4626.88  
chr 42 2847164 2847088 Met CAT caaaccccaa aacgacaaga0 0 86.34 59.4626.88  
chr 48 1702567 1702491 Met CAT tcgcacatgg cggcgatctt0 0 88.25 70.2418.01  
 
chr 52 1097553 1097478 Phe GAA gtcaggcgat cttcccagcg0 0 94.94 73.5321.41  
 
chr 16 2095661 2095737 Pro CGG gcggatcggt atttcttgaa0 0 81.12 59.4621.66  
chr 18 2214965 2215041 Pro GGG gctccacggt attcaaaaag0 0 80.21 59.5420.67  
chr 51 1251923 1251847 Pro TGG cgtgcccagt tttccttgca0 0 90.77 66.9023.87  
 
chr 57 268150 268084 Pseudo GCC ctatacacat gtttcccaag0 0 22.97 19.463.51  
 
chr 43 2679785 2679696 Ser CGA ggcacttcgc tttacctcac0 0 78.43 45.3833.05  
chr 54 839894 839802 Ser GCT gctgcgatcc acaccttgaa0 0 73.72 36.7936.93  
chr 12 1493941 1494031 Ser GGA aggctggtgc gccagccccc0 0 72.11 49.0523.06  
chr 15 2060462 2060551 Ser TGA tgctccgcat agtcgtggct0 0 78.73 46.7531.98  
 
chr 9 1385864 1385939 Thr CGT cacaaggcac ccttctttaa0 0 90.01 59.5630.45  
chr 30 3486528 3486602 Thr GGT gaaatggtgt tttccccctt0 0 84.05 64.6219.43  
chr 24 2752877 2752952 Thr TGT acagcgacaa ttccccgatc0 0 97.25 80.5516.70  
 
chr 6 879910 879985 Trp CCA acccgagcac ttttcgggcc0 0 88.15 63.6824.47  
 
chr 10 1413246 1413331 Tyr GTA acactggtgt ccagccttcc0 0 74.26 39.5034.76  
 
chr 28 3200632 3200717 Undet ??? tgtgcgagct acgaggttcg0 0 31.37 12.4618.91  
 
chr 53 904459 904385 Val CAC cttctctgac ttcccgacat0 0 90.73 68.8521.88  
chr 50 1329904 1329830 Val GAC ctgatggtgc tcggaaaacc0 0 81.69 56.9024.79  
chr 27 2980738 2980807 Val TAC gacggttttc cgcagtcggt0 0 34.85 16.1618.69  
chr 26 2932877 2932952 Val TAC ggtcgcacag ttcaaaaggc0 0 95.21 73.1822.03  


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.