GtRNAdb

tRNAscan-SE Analysis of Ornithorhynchus anatinus (platypus) (WUGSC 5.0.1 Mar 2007)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA851
Selenocysteine tRNAs (TCA)5
Possible suppressor tRNAs (CTA,TTA)3
tRNAs with undetermined
or unknown isotypes
11
Predicted pseudogenes0
Total tRNAs870


Intron Summary

tRNAs with introns
54
Ser
CGA
2
Arg
TCT
5
Leu
CAA
10
Phe
GAA
1
Ile
TAT
9
Tyr
GTA
26
Trp
CCA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
83
GGC
 
CGC
11
TGC
17
111
GlyACC
2
GCC
40
CCC
9
TCC
15
66
ProAGG
19
GGG
4
CGG
7
TGG
12
42
ThrAGT
23
GGT
1
CGT
10
TGT
18
52
ValAAC
23
GAC
1
CAC
10
TAC
15
49

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
16
GGA
4
CGA
8
TGA
6
ACT
2
GCT
18
 
 
 
 
54
ArgACG
12
GCG
 
CCG
14
TCG
7
 
 
 
 
CCT
9
TCT
6
48
LeuAAG
8
GAG
 
CAG
18
TAG
7
 
 
 
 
CAA
10
TAA
10
53

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
24
 
 
 
 
25
AsnATT
 
GTT
21
 
 
 
 
21
Lys 
 
 
 
CTT
25
TTT
32
57
AspATC
 
GTC
27
 
 
 
 
27
Glu 
 
 
 
CTC
27
TTC
16
43
HisATG
1
GTG
24
 
 
 
 
25
Gln 
 
 
 
CTG
19
TTG
11
30

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
27
GAT
 
 
 
TAT
10
37
Met 
 
 
 
CAT
32
 
 
32
TyrATA
 
GTA
28
 
 
 
 
28
Supres 
 
 
 
CTA
 
TTA
3
3
CysACA
 
GCA
37
 
 
 
 
37
Trp 
 
 
 
CCA
14
 
 
14
SelCys 
 
 
 
 
 
TCA
5
5

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.