GtRNAdb

tRNAscan-SE Analysis of Ovis aries (sheep) (Feb 2010)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA1172
Selenocysteine tRNAs (TCA)4
Possible suppressor tRNAs (CTA,TTA)3
tRNAs with undetermined
or unknown isotypes
7
Predicted pseudogenes0
Total tRNAs1186


Intron Summary

tRNAs with introns
29
Gly
GCC
3
Gly
CCC
2
Thr
AGT
1
Arg
TCT
4
Leu
AAG
1
Leu
CAA
4
Glu
TTC
1
Ile
TAT
5
Tyr
GTA
8


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
18
GGC
3
CGC
7
TGC
12
40
GlyACC
5
GCC
30
CCC
341
TCC
133
509
ProAGG
4
GGG
 
CGG
1
TGG
6
11
ThrAGT
5
GGT
 
CGT
3
TGT
5
13
ValAAC
7
GAC
 
CAC
9
TAC
8
24

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
2
GGA
3
CGA
3
TGA
4
ACT
 
GCT
7
 
 
 
 
19
ArgACG
2
GCG
2
CCG
6
TCG
6
 
 
 
 
CCT
33
TCT
22
71
LeuAAG
6
GAG
 
CAG
2
TAG
3
 
 
 
 
CAA
7
TAA
5
23

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
6
 
 
 
 
7
AsnATT
 
GTT
13
 
 
 
 
13
Lys 
 
 
 
CTT
16
TTT
22
38
AspATC
2
GTC
8
 
 
 
 
10
Glu 
 
 
 
CTC
60
TTC
139
199
HisATG
 
GTG
8
 
 
 
 
8
Gln 
 
 
 
CTG
9
TTG
7
16

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
6
GAT
 
 
 
TAT
5
11
Met 
 
 
 
CAT
18
 
 
18
TyrATA
2
GTA
16
 
 
 
 
18
Supres 
 
 
 
CTA
3
TTA
 
3
CysACA
16
GCA
61
 
 
 
 
77
Trp 
 
 
 
CCA
47
 
 
47
SelCys 
 
 
 
 
 
TCA
4
4

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.