GtRNAdb

tRNAscan-SE Analysis of Ochrobactrum anthropi ATCC 49188

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>> Genome Seq
tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr1 1 34671 34746 Ala GGC gaggtctgat aatgtttctt0 0 87.70 70.5917.11 Both
chr1 10 1348088 1348163 Ala TGC attgtgataa tcactttttt0 0 90.94 78.4412.50 Both
chr1 6 1085865 1085940 Ala TGC attgtgataa tcactttttt0 0 90.94 78.4412.50 Both
chr2 3 458670 458745 Ala TGC attgtgataa tcactttttt0 0 90.94 78.4412.50 Both
chr2 9 1601722 1601647 Ala TGC attgtgataa tcactttttt0 0 90.94 78.4412.50 Both
 
chr1 41 353572 353496 Arg ACG acacaggcaa tttttctcaa0 0 91.80 71.8919.91 Both
chr1 28 2334000 2333924 Arg CCG ttccggcaat tttttctcca0 0 90.32 67.8922.43 Both
chr1 40 935397 935321 Arg CCT ctcatcggtt acaaaatcaa0 0 88.11 66.1621.95 Both
chr1 21 2697314 2697238 Arg TCT cgaaaggcga cccccccacg0 0 90.68 69.0621.62 Both
 
chr2 12 1082209 1082135 Asn GTT gagcacctgt atactttcaa0 0 89.56 67.6021.96 Both
 
chr1 23 2551010 2550934 Asp GTC cgagaaatgc ctttcctctc0 0 92.83 78.8114.02 Both
chr1 24 2550688 2550612 Asp GTC cgagaaatgc ctttcctctc0 0 92.83 78.8114.02 Both
 
chr2 5 1068874 1068947 Cys GCA ccttacggaa atatttccat0 0 66.24 38.3727.87 Both
 
chr2 16 299796 299723 Gln CTG atattcctgc atactttctt0 0 67.13 39.4327.70 Both
chr1 4 726699 726773 Gln TTG tttgatttgt tgaattacga0 0 74.48 42.6131.87 Both
 
chr1 8 1312035 1312109 Glu CTC catggcttaa tcacttcttc0 0 65.98 40.1225.86 Both
chr1 31 2015496 2015422 Glu TTC acaccagcag ttgctggttt0 0 71.93 46.0725.86 Both
chr1 32 2015275 2015201 Glu TTC acaccagcag ttgctggttt0 0 71.93 46.0725.86 Both
 
chr1 30 2168760 2168687 Gly CCC attacagttt acacaatcgc0 0 65.12 39.4025.72 Eufind
chr1 37 1355764 1355690 Gly GCC actggcgcga gtttttctcc0 0 88.17 69.6718.50 Both
chr2 15 611905 611831 Gly GCC actggcgcga gtcagtcagg0 0 88.17 69.6718.50 Both
chr1 14 2040654 2040727 Gly TCC ttaagagtgc aatttttcag0 0 83.28 66.5216.76 Both
 
chr2 11 1333873 1333797 His GTG acaaaggtac ttgtctctca0 0 86.57 62.9823.59 Both
 
chr1 5 1085777 1085853 Ile GAT tctgatacaa aattgtgata0 0 99.09 80.3318.76 Both
chr1 9 1348000 1348076 Ile GAT tctgatacaa aattgtgata0 0 99.09 80.3318.76 Both
chr2 2 458582 458658 Ile GAT tctgatacaa aattgtgata0 0 99.09 80.3318.76 Both
chr2 8 1601810 1601734 Ile GAT tctgatacaa aattgtgata0 0 99.09 80.3318.76 Both
 
chr1 39 1051311 1051227 Leu CAA gcagaaatgt ttcattccac0 0 76.80 53.2823.52 Both
chr1 35 1406085 1405999 Leu CAG ggtcctcgtc tttccaagtc0 0 78.71 51.1027.61 Both
chr1 16 2269141 2269225 Leu GAG cctaccacgg tttaccactg0 0 70.40 35.2535.15 Both
chr1 29 2245248 2245163 Leu TAA ggcaattgct cctcctcctt0 0 75.57 50.4825.09 Both
chr1 25 2451550 2451468 Leu TAG cggttcagaa caatttacca0 0 74.64 53.0321.61 Both
 
chr1 33 1947171 1947096 Lys CTT caaagcgagt gtcttttcaa0 0 96.09 72.4323.66 Both
chr2 13 1033629 1033554 Lys TTT ctcctacagg ctttctcttc0 0 95.04 69.0026.04 Both
 
chr1 11 1351704 1351780 Met CAT acacccatag aattcccacg0 0 81.76 54.8726.89 Both
chr1 7 1089481 1089557 Met CAT acacccatag aattcccacg0 0 81.76 54.8726.89 Both
chr2 10 1598106 1598030 Met CAT acacccatag aattcccacg0 0 81.76 54.8726.89 Both
chr2 4 462286 462362 Met CAT acacccatag tctttacttg0 0 81.76 54.8726.89 Both
chr1 26 2443519 2443445 Met CAT gcttctttgt gtttccaatc0 0 83.82 52.9430.88 Both
chr1 34 1640322 1640246 Met CAT agcgacgcgt ctttattagc0 0 86.65 69.3017.35 Both
chr1 12 1779957 1780033 Met CAT acgttgcgtg ttttctccct0 0 87.64 69.8117.83 Both
 
chr1 42 338431 338356 Phe GAA tgttacggat ctctaaaccc0 0 93.28 73.7619.52 Both
 
chr1 2 224559 224635 Pro CGG cacgtggtca tctttcaagt0 0 86.87 61.1325.74 Both
chr1 18 2641458 2641534 Pro GGG ttccccggct tttttcttcc0 0 81.90 58.9822.92 Both
chr1 20 2697976 2697900 Pro TGG ttgaaagcga tcttccccaa0 0 93.11 69.3323.78 Both
 
chr2 1 151860 151951 SeC(p) TCA ttcaatatct gccaatcggc0 0 45.68 0.000.00 Eufind
 
chr1 38 1097009 1096920 Ser CGA tgcacaatgc tatcacttca0 0 78.59 50.8327.76 Both
chr1 19 2773282 2773372 Ser GCT cgcccttacc gctgcctcaa0 0 72.54 44.0828.46 Both
chr1 36 1388891 1388802 Ser GGA caaggcagac gaatgtcccc0 0 77.71 49.8227.89 Both
chr2 14 992306 992217 Ser TGA acaattgtct tttcagtata0 0 80.78 53.1427.64 Both
 
chr2 6 1474675 1474750 Thr CGT aatgttccgg taaaatcaat0 0 92.11 61.6630.45 Both
chr1 3 344746 344820 Thr GGT tcaagagatt ttattttcca0 0 86.73 63.2423.49 Both
chr1 17 2370594 2370669 Thr TGT gggcgcaagt gcacatcgcc0 0 94.13 76.8417.29 Both
 
chr1 15 2042108 2042183 Trp CCA aatgccgcat ttttataacg0 0 88.85 70.3818.47 Both
 
chr1 13 2040545 2040629 Tyr GTA agtgatatct ctgtcggatc0 0 73.28 41.1732.11 Both
 
chr1 27 2342239 2342165 Val CAC ttggctcatc ttcacttcat0 0 88.54 67.0721.47 Both
chr2 7 1720645 1720719 Val GAC cacatcgaat ttcgatctcc0 0 86.72 64.0322.69 Both
chr1 22 2606808 2606733 Val TAC cgaaacagtc cttatctcct0 0 92.99 68.8824.11 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.