GtRNAdb

tRNAscan-SE Analysis of Oryctolagus cuniculus (rabbit) (Broad Apr 2009)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA505
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
2
Predicted pseudogenes0
Total tRNAs508


Intron Summary

tRNAs with introns
27
Gly
CCC
1
Arg
TCT
5
Leu
CAA
3
Ile
TAT
7
Tyr
GTA
11


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
21
GGC
 
CGC
4
TGC
9
34
GlyACC
 
GCC
21
CCC
16
TCC
14
51
ProAGG
9
GGG
 
CGG
4
TGG
5
18
ThrAGT
8
GGT
1
CGT
5
TGT
7
21
ValAAC
12
GAC
 
CAC
14
TAC
8
34

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
10
GGA
 
CGA
5
TGA
4
ACT
 
GCT
10
 
 
 
 
29
ArgACG
7
GCG
 
CCG
4
TCG
5
 
 
 
 
CCT
6
TCT
6
28
LeuAAG
5
GAG
 
CAG
16
TAG
4
 
 
 
 
CAA
3
TAA
6
34

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
14
 
 
 
 
14
AsnATT
1
GTT
26
 
 
 
 
27
Lys 
 
 
 
CTT
29
TTT
12
41
AspATC
1
GTC
23
 
 
 
 
24
Glu 
 
 
 
CTC
19
TTC
18
37
HisATG
 
GTG
9
 
 
 
 
9
Gln 
 
 
 
CTG
15
TTG
5
20

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
11
GAT
1
 
 
TAT
7
19
Met 
 
 
 
CAT
18
 
 
18
TyrATA
 
GTA
12
 
 
 
 
12
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
25
 
 
 
 
25
Trp 
 
 
 
CCA
10
 
 
10
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.