GtRNAdb

tRNAscan-SE Analysis of Oryzias latipes (Medaka) (Oct 2005)

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> Genome DB
>> Genome Seq
tRNA Gene Summary





tRNAs Decoding Standard 20 AA621
Selenocysteine tRNAs (TCA)3
Possible suppressor tRNAs (CTA,TTA)1
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs625


Intron Summary

tRNAs with introns
34
Arg
TCT
3
Leu
CAA
3
Ile
TAT
16
Tyr
GTA
12


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
9
GGC
 
CGC
4
TGC
9
22
GlyACC
1
GCC
12
CCC
3
TCC
13
29
ProAGG
6
GGG
 
CGG
2
TGG
9
17
ThrAGT
59
GGT
 
CGT
12
TGT
10
81
ValAAC
10
GAC
 
CAC
10
TAC
4
24

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
10
GGA
 
CGA
9
TGA
7
ACT
 
GCT
11
 
 
 
 
37
ArgACG
5
GCG
 
CCG
12
TCG
43
 
 
 
 
CCT
14
TCT
8
82
LeuAAG
6
GAG
1
CAG
10
TAG
7
 
 
 
 
CAA
11
TAA
12
47

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
10
 
 
 
 
11
AsnATT
 
GTT
9
 
 
 
 
9
Lys 
 
 
 
CTT
10
TTT
9
19
AspATC
 
GTC
11
 
 
 
 
11
Glu 
 
 
 
CTC
17
TTC
11
28
HisATG
 
GTG
44
 
 
 
 
44
Gln 
 
 
 
CTG
48
TTG
15
63

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
18
GAT
 
 
 
TAT
16
34
Met 
 
 
 
CAT
22
 
 
22
TyrATA
1
GTA
12
 
 
 
 
13
Supres 
 
 
 
CTA
 
TTA
1
1
CysACA
 
GCA
20
 
 
 
 
20
Trp 
 
 
 
CCA
8
 
 
8
SelCys 
 
 
 
 
 
TCA
3
3

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.