GtRNAdb

tRNAscan-SE Analysis of Oryza sativa

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA738
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes26
Total tRNAs764


Intron Summary

tRNAs with introns
36
Ala
GGC
1
Thr
TGT
1
Ser
TGA
1
Ser
GCT
2
Met
CAT
15
Tyr
ATA
1
Tyr
GTA
13
Cys
GCA
2


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
20
GGC
1
CGC
12
TGC
10
43
GlyACC
 
GCC
28
CCC
9
TCC
10
47
ProAGG
14
GGG
 
CGG
9
TGG
14
37
ThrAGT
11
GGT
8
CGT
5
TGT
15
39
ValAAC
17
GAC
16
CAC
10
TAC
4
47

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
12
GGA
4
CGA
8
TGA
17
ACT
 
GCT
20
 
 
 
 
61
ArgACG
24
GCG
 
CCG
8
TCG
4
 
 
 
 
CCT
11
TCT
12
59
LeuAAG
15
GAG
 
CAG
10
TAG
10
 
 
 
 
CAA
19
TAA
4
58

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
20
 
 
 
 
20
AsnATT
 
GTT
29
 
 
 
 
29
Lys 
 
 
 
CTT
20
TTT
12
32
AspATC
1
GTC
31
 
 
 
 
32
Glu 
 
 
 
CTC
25
TTC
16
41
HisATG
 
GTG
26
 
 
 
 
26
Gln 
 
 
 
CTG
10
TTG
21
31

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
18
GAT
 
 
 
TAT
5
23
Met 
 
 
 
CAT
56
 
 
56
TyrATA
2
GTA
19
 
 
 
 
21
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
1
GCA
17
 
 
 
 
18
Trp 
 
 
 
CCA
18
 
 
18
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.