GtRNAdb

tRNAscan-SE Analysis of Plasmodium falciparum (Oct 2007)

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA35
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs35


Intron Summary

tRNAs with introns
1
Tyr
GTA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
1
GGC
 
CGC
1
TGC
1
3
GlyACC
 
GCC
 
CCC
 
TCC
1
1
ProAGG
1
GGG
 
CGG
1
TGG
1
3
ThrAGT
 
GGT
 
CGT
1
TGT
1
2
ValAAC
1
GAC
 
CAC
1
TAC
1
3

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
1
GGA
 
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
ArgACG
 
GCG
 
CCG
 
TCG
1
 
 
 
 
CCT
 
TCT
1
2
LeuAAG
1
GAG
 
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
1
 
 
 
 
1
AsnATT
 
GTT
1
 
 
 
 
1
Lys 
 
 
 
CTT
 
TTT
 
0
AspATC
 
GTC
1
 
 
 
 
1
Glu 
 
 
 
CTC
1
TTC
1
2
HisATG
 
GTG
 
 
 
 
 
0
Gln 
 
 
 
CTG
1
TTG
1
2

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
1
GAT
 
 
 
TAT
1
2
Met 
 
 
 
CAT
2
 
 
2
TyrATA
 
GTA
1
 
 
 
 
1
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
 
 
 
 
 
0
Trp 
 
 
 
CCA
 
 
 
0
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.