GtRNAdb

tRNAscan-SE Analysis of Papio hamadryas (baboon) (Nov 2008)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA410
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)1
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs412


Intron Summary

tRNAs with introns
31
Arg
TCT
5
Leu
CAA
7
Ile
TAT
4
Tyr
GTA
15


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
19
GGC
1
CGC
5
TGC
9
34
GlyACC
 
GCC
13
CCC
8
TCC
4
25
ProAGG
7
GGG
 
CGG
4
TGG
6
17
ThrAGT
10
GGT
 
CGT
6
TGT
7
23
ValAAC
9
GAC
1
CAC
12
TAC
7
29

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
9
GGA
 
CGA
3
TGA
5
ACT
 
GCT
9
 
 
 
 
26
ArgACG
7
GCG
 
CCG
4
TCG
6
 
 
 
 
CCT
5
TCT
6
28
LeuAAG
9
GAG
 
CAG
6
TAG
3
 
 
 
 
CAA
7
TAA
7
32

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
12
 
 
 
 
12
AsnATT
1
GTT
18
 
 
 
 
19
Lys 
 
 
 
CTT
12
TTT
12
24
AspATC
1
GTC
10
 
 
 
 
11
Glu 
 
 
 
CTC
4
TTC
13
17
HisATG
 
GTG
10
 
 
 
 
10
Gln 
 
 
 
CTG
11
TTG
6
17

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
12
GAT
2
 
 
TAT
4
18
Met 
 
 
 
CAT
15
 
 
15
TyrATA
 
GTA
15
 
 
 
 
15
Supres 
 
 
 
CTA
 
TTA
1
1
CysACA
2
GCA
28
 
 
 
 
30
Trp 
 
 
 
CCA
8
 
 
8
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.