GtRNAdb

tRNAscan-SE Analysis of Photobacterium profundum SS9

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA167
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes0
Total tRNAs169


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
2
CGC
 
TGC
5
7
GlyACC
 
GCC
11
CCC
 
TCC
4
15
ProAGG
 
GGG
 
CGG
 
TGG
6
6
ThrAGT
 
GGT
2
CGT
 
TGT
7
9
ValAAC
 
GAC
4
CAC
 
TAC
7
11

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
2
CGA
 
TGA
10
ACT
 
GCT
3
 
 
 
 
15
ArgACG
10
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
13
LeuAAG
 
GAG
1
CAG
 
TAG
12
 
 
 
 
CAA
1
TAA
5
19

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
3
 
 
 
 
3
AsnATT
 
GTT
4
 
 
 
 
4
Lys 
 
 
 
CTT
1
TTT
6
7
AspATC
 
GTC
9
 
 
 
 
9
Glu 
 
 
 
CTC
 
TTC
7
7
HisATG
 
GTG
2
 
 
 
 
2
Gln 
 
 
 
CTG
 
TTG
7
7

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
3
 
 
TAT
 
3
Met 
 
 
 
CAT
15
 
 
15
TyrATA
 
GTA
8
 
 
 
 
8
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
4
 
 
 
 
4
Trp 
 
 
 
CCA
3
 
 
3
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.