Genomic tRNA Database: Photobacterium profundum SS9

tRNAscan-SE Analysis of Photobacterium profundum SS9

>> Main Overview

>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> FASTA Seqs

>> Run Options/Stats

>> Analysis Notes

>> UCSC Genome Browser

>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 167
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 1
 Predicted pseudogenes 0
 Total tRNAs 169
 
 
Intron Summary tRNAs with introns 
 0

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
   GGC 
 2 CGC 
   TGC 
 5 7
 Gly ACC 
   GCC 
 11 CCC 
   TCC 
 4 15
 Pro AGG 
   GGG 
   CGG 
   TGG 
 6 6
 Thr AGT 
   GGT 
 2 CGT 
   TGT 
 7 9
 Val AAC 
   GAC 
 4 CAC 
   TAC 
 7 11  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
   GGA 
 2 CGA 
   TGA 
 10 ACT 
   GCT 
 3   
     
   15
 Arg ACG 
 10 GCG 
   CCG 
 1 TCG 
     
     
   CCT 
 1 TCT 
 1 13
 Leu AAG 
   GAG 
 1 CAG 
   TAG 
 12   
     
   CAA 
 1 TAA 
 5 19
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 3   
     
   3
 Asn ATT 
   GTT 
 4   
     
   4
 Lys   
     
   CTT 
 1 TTT 
 6 7
 Asp ATC 
   GTC 
 9   
     
   9
 Glu   
     
   CTC 
   TTC 
 7 7
 His ATG 
   GTG 
 2   
     
   2
 Gln   
     
   CTG 
   TTG 
 7 7  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
   GAT 
 3   
   TAT 
   3
 Met   
     
   CAT 
 15   
   15
 Tyr ATA 
   GTA 
 8   
     
   8
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 4   
     
   4
 Trp   
     
   CCA 
 3   
   3
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.