GtRNAdb

tRNAscan-SE Analysis of Petromyzon marinus (lamprey) (WUSTL 3.0 Mar 2007)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA2328
Selenocysteine tRNAs (TCA)3
Possible suppressor tRNAs (CTA,TTA)2
tRNAs with undetermined
or unknown isotypes
8
Predicted pseudogenes0
Total tRNAs2341


Intron Summary

tRNAs with introns
170
Gly
ACC
2
Val
AAC
1
Arg
TCT
2
Leu
TAG
1
Leu
CAA
25
Asn
GTT
2
Lys
TTT
12
Gln
TTG
3
Ile
TAT
17
Tyr
GTA
104
Supres
TTA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
103
GGC
 
CGC
33
TGC
29
165
GlyACC
3
GCC
47
CCC
8
TCC
16
74
ProAGG
46
GGG
 
CGG
21
TGG
39
106
ThrAGT
45
GGT
18
CGT
24
TGT
18
105
ValAAC
198
GAC
1
CAC
91
TAC
38
328

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
28
GGA
 
CGA
40
TGA
19
ACT
 
GCT
50
 
 
 
 
137
ArgACG
100
GCG
1
CCG
10
TCG
32
 
 
 
 
CCT
48
TCT
14
205
LeuAAG
50
GAG
 
CAG
71
TAG
14
 
 
 
 
CAA
39
TAA
8
182

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
37
 
 
 
 
38
AsnATT
 
GTT
137
 
 
 
 
137
Lys 
 
 
 
CTT
33
TTT
34
67
AspATC
1
GTC
78
 
 
 
 
79
Glu 
 
 
 
CTC
21
TTC
19
40
HisATG
2
GTG
30
 
 
 
 
32
Gln 
 
 
 
CTG
90
TTG
32
122

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
105
GAT
 
 
 
TAT
18
123
Met 
 
 
 
CAT
196
 
 
196
TyrATA
 
GTA
106
 
 
 
 
106
Supres 
 
 
 
CTA
1
TTA
1
2
CysACA
 
GCA
71
 
 
 
 
71
Trp 
 
 
 
CCA
15
 
 
15
SelCys 
 
 
 
 
 
TCA
3
3

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.