Genomic tRNA Database: Petromyzon marinus (lamprey) (WUSTL 3.0 Mar 2007)

tRNAscan-SE Analysis of Petromyzon marinus (lamprey) (WUSTL 3.0 Mar 2007)

>> Main Overview

>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> FASTA Seqs

>> Run Options/Stats

>> Analysis Notes

>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 2328
 Selenocysteine tRNAs (TCA) 3
 Possible suppressor tRNAs (CTA,TTA) 2
 tRNAs with undetermined 
 or unknown isotypes 8
 Predicted pseudogenes 0
 Total tRNAs 2341
 
 
Intron Summary tRNAs with introns 
 170 Gly 
 ACC 
 2 Val 
 AAC 
 1 Arg 
 TCT 
 2 Leu 
 TAG 
 1 Leu 
 CAA 
 25 Asn 
 GTT 
 2 Lys 
 TTT 
 12 Gln 
 TTG 
 3 Ile 
 TAT 
 17 Tyr 
 GTA 
 104 Supres 
 TTA 
 1

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 103 GGC 
   CGC 
 33 TGC 
 29 165
 Gly ACC 
 3 GCC 
 47 CCC 
 8 TCC 
 16 74
 Pro AGG 
 46 GGG 
   CGG 
 21 TGG 
 39 106
 Thr AGT 
 45 GGT 
 18 CGT 
 24 TGT 
 18 105
 Val AAC 
 198 GAC 
 1 CAC 
 91 TAC 
 38 328  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 28 GGA 
   CGA 
 40 TGA 
 19 ACT 
   GCT 
 50   
     
   137
 Arg ACG 
 100 GCG 
 1 CCG 
 10 TCG 
 32   
     
   CCT 
 48 TCT 
 14 205
 Leu AAG 
 50 GAG 
   CAG 
 71 TAG 
 14   
     
   CAA 
 39 TAA 
 8 182
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
 1 GAA 
 37   
     
   38
 Asn ATT 
   GTT 
 137   
     
   137
 Lys   
     
   CTT 
 33 TTT 
 34 67
 Asp ATC 
 1 GTC 
 78   
     
   79
 Glu   
     
   CTC 
 21 TTC 
 19 40
 His ATG 
 2 GTG 
 30   
     
   32
 Gln   
     
   CTG 
 90 TTG 
 32 122  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 105 GAT 
     
   TAT 
 18 123
 Met   
     
   CAT 
 196   
   196
 Tyr ATA 
   GTA 
 106   
     
   106
 Supres   
     
   CTA 
 1 TTA 
 1 2
 Cys ACA 
   GCA 
 71   
     
   71
 Trp   
     
   CCA 
 15   
   15
 SelCys   
     
     
   TCA 
 3 3

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.