GtRNAdb

tRNAscan-SE Analysis of Pristionchus pacificus (WUGSC 5.0 Feb 2007)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA1278
Selenocysteine tRNAs (TCA)4
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
10
Predicted pseudogenes224
Total tRNAs1516


Intron Summary

tRNAs with introns
16
Gly
GCC
1
Pro
TGG
1
Val
CAC
1
Val
TAC
1
Arg
GCG
1
Arg
CCT
1
Leu
CAA
8
Asn
ATT
1
Lys
TTT
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
51
GGC
1
CGC
13
TGC
16
81
GlyACC
 
GCC
35
CCC
2
TCC
51
88
ProAGG
33
GGG
 
CGG
12
TGG
13
58
ThrAGT
34
GGT
58
CGT
18
TGT
11
121
ValAAC
28
GAC
 
CAC
19
TAC
9
56

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
22
GGA
1
CGA
10
TGA
10
ACT
1
GCT
14
 
 
 
 
58
ArgACG
138
GCG
1
CCG
2
TCG
11
 
 
 
 
CCT
7
TCT
13
172
LeuAAG
33
GAG
 
CAG
16
TAG
6
 
 
 
 
CAA
8
TAA
3
66

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
23
 
 
 
 
23
AsnATT
12
GTT
34
 
 
 
 
46
Lys 
 
 
 
CTT
60
TTT
70
130
AspATC
 
GTC
49
 
 
 
 
49
Glu 
 
 
 
CTC
50
TTC
32
82
HisATG
 
GTG
40
 
 
 
 
40
Gln 
 
 
 
CTG
27
TTG
13
40

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
32
GAT
1
 
 
TAT
18
51
Met 
 
 
 
CAT
37
 
 
37
TyrATA
2
GTA
29
 
 
 
 
31
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
1
GCA
28
 
 
 
 
29
Trp 
 
 
 
CCA
20
 
 
20
SelCys 
 
 
 
 
 
TCA
4
4

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.