GtRNAdb

tRNAscan-SE Analysis of Physcomitrella patens (Version 1.1)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA417
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)2
tRNAs with undetermined
or unknown isotypes
2
Predicted pseudogenes10
Total tRNAs432


Intron Summary

tRNAs with introns
21
His
GTG
1
Met
CAT
11
Tyr
GTA
8
Supres
CTA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
19
GGC
 
CGC
8
TGC
9
36
GlyACC
 
GCC
15
CCC
11
TCC
9
35
ProAGG
13
GGG
 
CGG
4
TGG
8
25
ThrAGT
10
GGT
 
CGT
6
TGT
5
21
ValAAC
13
GAC
 
CAC
11
TAC
2
26

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
13
GGA
 
CGA
7
TGA
5
ACT
 
GCT
9
 
 
 
 
34
ArgACG
8
GCG
1
CCG
5
TCG
7
 
 
 
 
CCT
10
TCT
6
37
LeuAAG
6
GAG
1
CAG
5
TAG
5
 
 
 
 
CAA
6
TAA
2
25

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
14
 
 
 
 
15
AsnATT
1
GTT
14
 
 
 
 
15
Lys 
 
 
 
CTT
16
TTT
8
24
AspATC
 
GTC
11
 
 
 
 
11
Glu 
 
 
 
CTC
14
TTC
7
21
HisATG
 
GTG
9
 
 
 
 
9
Gln 
 
 
 
CTG
10
TTG
9
19

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
12
GAT
 
 
 
TAT
4
16
Met 
 
 
 
CAT
24
 
 
24
TyrATA
 
GTA
8
 
 
 
 
8
Supres 
 
 
 
CTA
2
TTA
 
2
CysACA
 
GCA
7
 
 
 
 
7
Trp 
 
 
 
CCA
9
 
 
9
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.