GtRNAdb

tRNAscan-SE Analysis of Prochlorococcus marinus MIT 9312

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA37
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes2
Total tRNAs39


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
1
CGC
 
TGC
1
2
GlyACC
 
GCC
1
CCC
 
TCC
1
2
ProAGG
 
GGG
1
CGG
 
TGG
1
2
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ValAAC
 
GAC
1
CAC
 
TAC
1
2

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
LeuAAG
1
GAG
 
CAG
 
TAG
1
 
 
 
 
CAA
1
TAA
1
4

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
1
 
 
 
 
1
AsnATT
 
GTT
1
 
 
 
 
1
Lys 
 
 
 
CTT
 
TTT
1
1
AspATC
 
GTC
1
 
 
 
 
1
Glu 
 
 
 
CTC
 
TTC
1
1
HisATG
 
GTG
1
 
 
 
 
1
Gln 
 
 
 
CTG
 
TTG
1
1

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
1
 
 
TAT
 
1
Met 
 
 
 
CAT
3
 
 
3
TyrATA
 
GTA
1
 
 
 
 
1
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
1
 
 
 
 
1
Trp 
 
 
 
CCA
1
 
 
1
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.