GtRNAdb

tRNAscan-SE Analysis of Prochlorococcus marinus NATL1A

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCATAGCTCAGCTGGTAGAGCACCTGCATGGCATGCAGGGG...........GtCAGCGGTTCGAATCCGCTTGGCTCCA... chr.trna21-AlaGGC Sc: 85.56 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGTATAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGAT...........GtCAGCGGTTCGAGTCCGCTTACCTCCA... chr.trna3-AlaTGC Sc: 90.94

Arg tRNAs

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCTGTAGCTCAGC.GGAttA.GAGCATCTGACTACGGATCAGAGG...........GtCGGGAGTTCGAATCTCTCCAGGCGCG... chr.trna36-ArgACG Sc: 76.73 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCATGTAGCTCAGTTGGAt.A.GAGCATCAGATTCCGGTTCTGAGA...........GtCGGGGGTTCGAGTCCCTCCATGCTCG... chr.trna14-ArgCCG Sc: 76.42 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTGTAGCTCAGTTGGAt.A.GAGCGACGGTTTCCTAAACCGTAG...........GtCGTGGGTTCAAGTCCCGCCAGCCCCG... chr.trna18-ArgCCT Sc: 86.39 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTCCCTTAGCTCAGCTGGAt.A.GAGCAACTGCCTTCTAAGCAGTGG...........GcCGCTGGTTCGAATCCAGCAGGGAGCG... chr.trna8-ArgTCT Sc: 82.72

Asn tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<.... TCCTCGGTAGCTCAGCGGTA.GAGCGATCGGCTGTTAACCGATTG...........GtCGCAGGTTCGAATCCCGCCCGGGGAG... chr.trna1-AsnGTT Sc: 75.77

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGACCGTAGTTCAACTGGTtAGAGCACCGCCCTGTCACGGCGGAA...........GtTGCGGGTTCGAATCCCGTCGGTCCCG... chr.trna30-AspGTC Sc: 79.78

Cys tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<.... GGCGGCATGGCCAAGTGGTA.AGGCAGAGGATTGCAAATCCTTT...........AtCCCCAGTTCGAATCTGGG.TGCCGCCT... chr.trna15-CysGCA Sc: 67.72

Gln tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGCCGTCGCCAAGTGGTA.AGGCATCGGGTTTTGGTCTCGACA...........TtCCTAGGTTCGAATCCTAGCGGCCCAG... chr.trna13-GlnTTG Sc: 59.92

Glu tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCCCCATCGTCTAGAGGCctA.GGACACCTCCCTTTCACGGAGGCG...........ACAGGGGTTCGAATCCCCTTGGGGCTA... chr.trna7-GluTTC Sc: 58.12

Gly tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGATGTAGCTCAGTGGTA.GAGCATCTCCTTGCCAAGGAGAAT...........GtCGAGAGTTCGAATCTCTTCATCCGCT... chr.trna17-GlyGCC Sc: 82.15 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGTTCAGTGGTA.GAACGTCAGCTTCCCAAGCTGAAT...........GtCGCCAGTTCGAGTCTGGTCATCCGCT... chr.trna6-GlyCCC Sc: 77.41 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCGTAGTTTAGTGGTA.AAACCTCAGCCTTCCAAGCTGATG...........A.TGCGGGTTCGATTCCCGCCGCCCGCT... chr.trna20-GlyTCC Sc: 70.16

His tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTCGCCAAGTGGTtA.AGGCAGCGGCTTGTGGTGCCGCCA...........TcCGGGGGTTCGAATCCCCTCATCCGCC... chr.trna10-HisGTG Sc: 60.30

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCATTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCCCTGGTTCAAGTCCAGGATGGCCCA... chr.trna2-IleGAT Sc: 86.10

Leu tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGATGTGGCGGAATTGGTaTACGCGCATGTCTAAGGAACATGTGGCTT...........CGGCCtTGCGAGTTCAAGTCTCGC.CATCCGCA... chr.trna38-LeuAAG Sc: 62.62 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>.>.............<.<...>>>>>.......<<<<<.<<<<<<<.... GCCCACCTGGCGGAATTGGTaGACGCGCTGGTTTTAGGTACCAGTGGCT..TTAT.......GTCG.TGGGAGTTCAAGTCTCCC.GGTGGGCA... chr.trna37-LeuTAG Sc: 58.51 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.... GGGAGCGTGGTGGAATTGGTaGACGCACCGCACTCAAAATGCGGCACCTT...........CGGGTtTGTCGGTTCAAGTCCGAC.CGCTCCCA... chr.trna9-LeuCAA Sc: 63.26 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>.........<<<<<...>>>>>.......<<<<<.<<<<<<<.... GCCAGCGTGGTGGAATTGGTaGACACACAGGACTTAAAATCCTGA.GATCCGCAA.....GGGTCG.TACGAGTTCAAGTCTCGT.CGCTGGTA... chr.trna28-LeuTAA Sc: 64.31

Lys tRNAs

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGGTCGCTAGCTCAGTGGTA.GAGCATCCGGCTTTTAACCGGCTG...........GtCCTGAGTTCGAATCTCAGGCGACCCA... chr.trna23-LysTTT Sc: 76.69

Met tRNAs

.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTAGAGCAGTCtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGCAAGTTCAAATCTTGCCCCCGCCACCA chr.trna26-MetCAT Sc: 85.08 >>>>>>>..>>>>...........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GTCAGTGTAGCTCAGCC.GGTtA.GAGCACAGCATTCATAACGCTGAG...........GtCGAGAGTTCAAGTCTCTCCACTGACA... chr.trna5-MetCAT Sc: 75.73 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGTGTAGCAATCT..GGTgA.ATGCAGCGAACTCATAATTCGCCT...........TaGGCGAGTTCGATCCTCGCCACCCCCA... chr.trna35-MetCAT Sc: 44.16

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGGGATAGCTCAGTTGGTAGAGCAGGCGACTGAAAATCGCCGT...........GtCCCCAGTTCAAATCTGGGTCCTGGCACCA chr.trna34-PheGAA Sc: 85.68

Pro tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGACGTAGCGCAGTTtGGTAGCGCACCACTTTGGGGTAGTGGGG...........GtCGTGGGTTCAAATCCCGCCGTTCCGA... chr.trna25-ProGGG Sc: 73.90 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTGGCGCAGCTtGGTAGCGCGGGTGCTTTGGGAGCACTAG...........GtCGCAGGTTCGAATCCTGTCGCCCCGATCA chr.trna24-ProTGG Sc: 81.28

SeC tRNAs

Ser tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>>>>.....<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGGCCGAGTGGTtgA.AGGCGCAGCACTGGAAATGCTGT..ATAGGGGCAA.CCCTAT..CGAGGGTTCGAATCCCTC..TCTCTCCG... chr.trna4-SerGGA Sc: 69.01 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>>.........<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGGCTGAGTGGTcgA.AAGCGAACGACTCGAAATCGTTTG.ATAGC.TAAA..ACTATC.CGTGGGTTCGAATCCCAC..CCTCTCCG... chr.trna22-SerCGA Sc: 68.66 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...>>>>>>.....<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGTTGGTCGAGTGGTttA.TGGCTCTAGTCTTGAAAACTAGC..ATGGGGGCAA.CTCCAT..CGGGGGTTCGAATCCCCC..ACTCTCCG... chr.trna27-SerTGA Sc: 58.25 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>>>.......<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGGCTGAGTGGTtgA.AAGCGGCTCCCTGCTAAGGAGTTAcAGGAG.GTAA..CTTCTGtCGAGGGTTCGAATCCCTC..CCTCTCCG... chr.trna19-SerGCT Sc: 72.89

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCTTGTAGCTCAGCGGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCTCGGGTTCAAGTCCCGACGAGGGCA... chr.trna32-ThrGGT Sc: 79.28 >>>>>>>..>>>>........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGGTGTAGCTCAGGGGTA.GAGCAACTGATTCGTAACCAGTAG...........GtCGGTGGTTCAATTCCACTCATCGGCA... chr.trna12-ThrCGT Sc: 74.91 >>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>.>>>.......<<<.<<<<<<<<.... GCCGGCTTAGCTCAGCGGTA.GAGCAGCGCTTTTGTAAAGCGAAG...........GtCATCAGTTCAAATCTGTTAGCCGGCA... chr.trna33-ThrTGT Sc: 74.01

Trp tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCGTTAGTTCAGTTGGTAGAACGCAGGTCTCCAAAACCTGAT...........GtCGGGGGTTCAAGTCCTCCACGGCGCG... chr.trna29-TrpCCA Sc: 81.69

Tyr tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>.>.........<.<...>>>>>.......<<<<<<<<<<<<.... GGGTCGGTGCCCGAGTGGTtaA.TGGGGGCGGACTGTAAATCCGCTGGCTA.......CGCCTaCGTTGGTTCAAATCCAACCCGGCCCA... chr.trna31-TyrGTA Sc: 54.03

Val tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTAGCTCAGAGGTA.GAGCACTACCTTGACACGGTAGGG...........GtCACTGGTTCGATTCCAGTATCGCCCA... chr.trna11-ValGAC Sc: 81.66 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<.... GGGCGATTAGCTCAGCGGTA.GAGCGCCTGCCTTACAAGCAGGAT...........GtCCCTGGTTCGAACCCTGGATCGCCCA... chr.trna16-ValTAC Sc: 81.28

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.