GtRNAdb

tRNAscan-SE Analysis of Prochlorococcus marinus NATL1A

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 21 1365265 1365193 Ala GGC tcacacactt ttcttgaaaa0 0 85.56 68.4717.09  
chr 3 387552 387624 Ala TGC attcgttgtt ctgaaaacta0 0 90.94 73.9117.03  
 
chr 36 311928 311855 Arg ACG gttttttcat tttaaaaaat0 0 76.73 55.5721.16  
chr 14 1662952 1663025 Arg CCG acccctcgtt taaattgaat0 0 76.42 57.9118.51  
chr 18 1698617 1698544 Arg CCT ttaatttcag tgcgaaaaac0 0 86.39 68.1718.22  
chr 8 1362133 1362206 Arg TCT atctgcgctt taagcaaact0 0 82.72 58.8023.92  
 
chr 1 184995 185066 Asn GTT aatgttgtaa tttttaaatg0 0 75.77 56.6319.14  
 
chr 30 481527 481454 Asp GTC gccttaaact tatctaaatc0 0 79.78 63.9115.87  
 
chr 15 1678924 1678994 Cys GCA tttcattttc taattattat0 0 67.72 36.9130.81  
 
chr 13 1649641 1649712 Gln TTG tctggaacaa ttttcaagaa0 0 59.92 30.8229.10  
 
chr 7 1220978 1221050 Glu TTC cacagcatct taaataaaat0 0 58.12 34.6123.51  
 
chr 6 1092399 1092470 Gly CCC ttaaacatct taaaataaaa0 0 77.41 56.8020.61  
chr 17 1765110 1765039 Gly GCC ctatgtttgt tttaaaaatc0 0 82.15 58.8623.29  
chr 20 1431955 1431885 Gly TCC tatttctagc taattttgat0 0 70.16 49.5820.58  
 
chr 10 1411489 1411561 His GTG tcttttcaag ctcaaatcct0 0 60.30 41.5218.78  
 
chr 2 387469 387542 Ile GAT ggtttctcct ttcgttgttg0 0 86.10 59.2026.90  
 
chr 38 121822 121741 Leu AAG gagttaactt ttattcaata0 0 62.62 31.3531.27  
chr 9 1406107 1406188 Leu CAA ataaacacat cttcattgat0 0 63.26 39.2624.00  
chr 28 569480 569395 Leu TAA agaaccactt ttcatttatg0 0 64.31 30.0834.23  
chr 37 293016 292934 Leu TAG aaaacctttg ttttttaatt0 0 58.51 22.1436.37  
 
chr 23 1173589 1173518 Lys TTT ggtctgaaaa ttttttttaa0 0 76.69 47.2529.44  
 
chr 35 327593 327521 Met CAT ctcctttttt tagaaaaatt0 0 44.16 16.4327.73  
chr 5 951623 951696 Met CAT gtattagtta ttagttcata0 0 75.73 50.1625.57  
chr 26 825992 825916 Met CAT ttttgtacta aataaaaact0 0 85.08 62.3122.77  
 
chr 34 367504 367429 Phe GAA agggtttaaa ttaaaaaagc0 0 85.68 56.9828.70  
 
chr 25 851079 851006 Pro GGG tttaaaaatg taaaattgaa0 0 73.90 51.8022.10  
chr 24 1164326 1164250 Pro TGG caaatagttg gtgatagcag0 0 81.28 58.5922.69  
 
chr 22 1322087 1322001 Ser CGA taacttctag catttttaga0 0 68.66 33.6535.01  
chr 19 1629234 1629146 Ser GCT tattggcaat ttcattattg0 0 72.89 46.8426.05  
chr 4 900647 900733 Ser GGA ctgattccaa tatcgcaagc0 0 69.01 39.4029.61  
chr 27 659854 659768 Ser TGA aatcttaagt ttctttgttg0 0 58.25 32.6025.65  
 
chr 12 1560860 1560931 Thr CGT ttattctagt taaagttatt0 0 74.91 62.2112.70  
chr 32 402240 402169 Thr GGT ctttccacaa tcgtcggagg0 0 79.28 52.5926.69  
chr 33 377781 377710 Thr TGT taaaaagatt ttttaaaacc0 0 74.01 53.3020.71  
 
chr 29 482026 481954 Trp CCA catataaaat tttgaaaacc0 0 81.69 59.2022.49  
 
chr 31 402333 402252 Tyr GTA taagtggatc tctttccaca0 0 54.03 29.6824.35  
 
chr 11 1464793 1464864 Val GAC tggttcgtaa ttcaccaata0 0 81.66 57.4524.21  
chr 16 1814007 1813936 Val TAC aaaattgtat tctaaatttc0 0 81.28 64.3116.97  


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.