GtRNAdb

tRNAscan-SE Analysis of Populus trichocarpa (Jan 2010 Version 2.0)

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>> Genome Seq
tRNA Gene Summary




tRNAs Decoding Standard 20 AA617
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)1
tRNAs with undetermined
or unknown isotypes
3
Predicted pseudogenes30
Total tRNAs652


Intron Summary

tRNAs with introns
74
Leu
AAG
35
Leu
GAG
1
Leu
CAG
1
Phe
AAA
6
Ile
AAT
1
Met
CAT
13
Tyr
GTA
17


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
20
GGC
 
CGC
5
TGC
18
43
GlyACC
 
GCC
25
CCC
7
TCC
17
49
ProAGG
14
GGG
 
CGG
4
TGG
22
40
ThrAGT
6
GGT
 
CGT
4
TGT
11
21
ValAAC
17
GAC
 
CAC
10
TAC
8
35

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
13
GGA
1
CGA
5
TGA
9
ACT
 
GCT
16
 
 
 
 
44
ArgACG
10
GCG
 
CCG
5
TCG
7
 
 
 
 
CCT
11
TCT
11
44
LeuAAG
40
GAG
1
CAG
7
TAG
 
 
 
 
 
CAA
3
TAA
7
58

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
4
GAA
18
 
 
 
 
22
AsnATT
 
GTT
22
 
 
 
 
22
Lys 
 
 
 
CTT
17
TTT
17
34
AspATC
 
GTC
33
 
 
 
 
33
Glu 
 
 
 
CTC
21
TTC
14
35
HisATG
 
GTG
13
 
 
 
 
13
Gln 
 
 
 
CTG
11
TTG
11
22

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
20
GAT
1
 
 
TAT
9
30
Met 
 
 
 
CAT
26
 
 
26
TyrATA
 
GTA
18
 
 
 
 
18
Supres 
 
 
 
CTA
 
TTA
1
1
CysACA
1
GCA
13
 
 
 
 
14
Trp 
 
 
 
CCA
14
 
 
14
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.