GtRNAdb

tRNAscan-SE Analysis of Rhodoferax ferrireducens T118

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>> tRNAs by Isotype
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>> Secondary Structures
>> tRNA Alignments
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>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCAGTTCGATCCTGCTTACCTCCACCA Rhodoferax_ferrireducens_T118.trna35-AlaGGC Sc: 83.65 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCGGTAGCTCAGATGGGAGAGCGCTGCGTTCGCAATGCAGAG...........GtCAGGAGTTCGATCCTCCTTCGGTCCACCA Rhodoferax_ferrireducens_T118.trna44-AlaCGC Sc: 76.71 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGTGTAGCTCAGCTGGGAGAGCGGCTGCTTTGCAAGCAGTAG...........GtAGCGGGTTCGAGTCCTGTCACCTCCACCA Rhodoferax_ferrireducens_T118.trna28-AlaTGC Sc: 87.76 GGGGGTGTAGCTCAGCTGGGAGAGCGGCTGCTTTGCAAGCAGTAG...........GtAGCGGGTTCGAGTCCTGTCACCTCCACCA Rhodoferax_ferrireducens_T118.trna26-AlaTGC Sc: 87.76

Arg tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCTGTAGCTCAGTTGGAtA.GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCAATTCCTGCCAGCCGCACCA Rhodoferax_ferrireducens_T118.trna5-ArgACG Sc: 86.55 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCTGTAGCTCAGT.GGAtA.GAGTATTGGCCTCCGAAGCCAAGG...........GtCGTGGGTTCGATCCCCGCCAGCCGCACCA Rhodoferax_ferrireducens_T118.trna1-ArgCCG Sc: 87.79 >>>.>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<<<.... GCCGTCGTAGTTCAAT.GGAtA.GAACGGGGACCTCCTAAGTCTCAG...........A.TATGGGTTCGATTCCCGTCGAGGGCGCCA Rhodoferax_ferrireducens_T118.trna11-ArgCCT Sc: 59.82 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CTGCCCGTAGCTCAGTTGGAtA.GAGCAACAGCCTTCTAAGCTGTGG...........GtCGGGGGTTCAATCCCCTCCGGGCAGACCA Rhodoferax_ferrireducens_T118.trna34-ArgTCT Sc: 88.58

Asn tRNAs

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... TCCTCGATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAG...........GtCCCTGGTTCGAGCCCAGGTCGAGGAGCCA Rhodoferax_ferrireducens_T118.trna41-AsnGTT Sc: 86.50

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA Rhodoferax_ferrireducens_T118.trna37-AspGTC Sc: 93.78

Cys tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCGCGATAGCAAATCGGTtA.TGCAACGGATTGCAAATCCGTCT...........AGCCCAGTTCGACTCTGGGTCGCGCCTCCA Rhodoferax_ferrireducens_T118.trna9-CysGCA Sc: 55.44

Gln tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGAGTCGCCAAGTTGGTtAAGGCACTGGATTTTGATTCCAGCA...........TgCGAAGGTTCGAATCCTTCTTCCCCTGCCA Rhodoferax_ferrireducens_T118.trna12-GlnTTG Sc: 73.06

Glu tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GACCCCATCGTCTAGAGGCctA.GGACACTACCCTTTCACGGTAGGT...........ACCGGGGTTCGAATCCCCGTGGGGTCGCCA Rhodoferax_ferrireducens_T118.trna36-GluTTC Sc: 58.16

Gly tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGGAATAGCTCAGTTGGTA.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGAGAGTTCGAGTCTCTT.TTCCCGCTCCA Rhodoferax_ferrireducens_T118.trna8-GlyGCC Sc: 93.66 >>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTAGTTCAAT.GGTA.GAACGGCAGCTTCCCAAGCTTCAT...........A.CGAGGGTTCGATTCCCTT.CACCCGCTCCA Rhodoferax_ferrireducens_T118.trna2-GlyCCC Sc: 73.68 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGGGTTCGTATAGT.GGTA.ATACCTTAGCCTTCCAAGCTAAA............GcGAGGAGTTCGATTCTCCT.ACCCCGCTCCA Rhodoferax_ferrireducens_T118.trna30-GlyTCC Sc: 57.92

His tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGCTGTAGCTCAGTTGGTAGAGTCCAGGATTGTGATTCCTGTT...........GtCGTGGGTTCGAGCCCCATCAGCCACCCCA Rhodoferax_ferrireducens_T118.trna16-HisGTG Sc: 78.52

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCTGTAGCTCAGTTGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAGACCAACCAGACCCACCA Rhodoferax_ferrireducens_T118.trna27-IleGAT Sc: 88.69 GGGTCTGTAGCTCAGTTGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAGACCAACCAGACCCACCA Rhodoferax_ferrireducens_T118.trna25-IleGAT Sc: 88.69 GGGTGAGTAGCTCAGTTGGT.AGAGCGGCTGGTTGATACCCAGTGC...........GtCGGCGGTTCGATTCCGTCTTCACCCA... Rhodoferax_ferrireducens_T118_plasmid1.trna1-IleGAT Sc: 78.33

Leu tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>...............<<...>>>>>.......<<<<<.<<<<<<<.... GCCGTCGTGGTGAAATTGGTaGACACGCTATCTTGAGGTGGTAGTGGC.....GAAA......GCTtTGCGAGTTCGAGTCTCGC.CGACGGCACCA Rhodoferax_ferrireducens_T118.trna6-LeuGAG Sc: 65.83 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.... GCCCGGATGGCGGAATTGGTaGACGCGCACGGTTCAGGTCCGTGT.GCC....GAAA.....GGTG.TGGAGGTTCGAGTCCTCT.TCCGGGCACCA Rhodoferax_ferrireducens_T118.trna39-LeuCAG Sc: 75.32 >>>>>>>..>>>...........<<<..>>>>.......<<<<...>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<.... GCGCGGGTGGCGAAATTGGTaGACGCACCAGGTTTAGGTCCTGAC.GCTG...GAAA....CAGTG.TGGGGGTTCGAGTCCCCC.CCCGCGCACCA Rhodoferax_ferrireducens_T118.trna7-LeuTAG Sc: 73.86 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.... GCCCGGGTGGTGGAATTGGTaGACGCACGGGACTCAAAATCCCGC.GCC....GCAA.....GGCG.TGCCGGTTCGATTCCGGC.CCCGGGCACCA Rhodoferax_ferrireducens_T118.trna18-LeuCAA Sc: 78.53 >>>>>>>..>>>...........<<<..>>>>.......<<<<...>>>>..>.....<..<<<<...>>>>>.......<<<<<.<<<<<<<.... GCCCGAGTGGTGAAATAGGTaGACACATCGGACTTAAAATCCGCC.GCTTCGTGAA.tAACGGGCG.TACCGGTTCGATTCCGGT.CTCGGGCACCA Rhodoferax_ferrireducens_T118.trna10-LeuTAA Sc: 69.16

Lys tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGAACTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGTAG...........GtCGAGAGTTCGAATCTCTCAGTTCCCACCA Rhodoferax_ferrireducens_T118.trna22-LysCTT Sc: 95.89 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGATGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTT...........GtCGTGGGTTCGACCCCCGCACATCCCACCA Rhodoferax_ferrireducens_T118.trna20-LysTTT Sc: 87.27

Met tRNAs

>>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGCGCTTTAGCTCAGTC.GGTtAGAGCGATGGAATCATAATCCACAG...........GtCCGCGGTTCGAATCCGTGAAGCGCCACCA Rhodoferax_ferrireducens_T118.trna40-MetCAT Sc: 87.35 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGCGATGGAGCAGCCtGGT.AGCTCGTTGGGCTCATAACCCAAAG...........GtCGTAGGTTCAAATCCTACTCGCGCAACCA Rhodoferax_ferrireducens_T118.trna24-MetCAT Sc: 84.99

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCCTGGTAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTTGT...........GtCGGTGGTTCGATTCCGCCCCGGGCCACCA Rhodoferax_ferrireducens_T118.trna33-PheGAA Sc: 85.63

Pro tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGTGTGTGGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGG...........GtCGAAGGTTCGAATCCTTTCACACCGACCA Rhodoferax_ferrireducens_T118.trna3-ProGGG Sc: 81.95 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAATGTGGCGCAGCCtGGTAGCGCACTTCGTTCGGGACGAAGGG...........GtCGGAGGTTCGAATCCTCTCATTCCGACCA Rhodoferax_ferrireducens_T118.trna43-ProCGG Sc: 84.60 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGCCtGGTAGCGCATCTGGTTTGGGACCAGAGG...........GtCGAAGGTTCGAATCCTTTCGCCCCGACCA Rhodoferax_ferrireducens_T118.trna17-ProTGG Sc: 91.14

SeC tRNAs

Ser tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>.........<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGCGGTGGATGAGTGGTttA.AGTCACACGCCTGGAAAGCGTGC.GAGGGG.TCAA..ACCCTC.CGGGGGTTCGAATCCCCC..CTGCTCCGCCA Rhodoferax_ferrireducens_T118.trna13-SerGGA Sc: 69.82 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGGCAGAGTGGCcgA.ATGTACCTGACTCGAAATCAGGCGTACC...GCAA....GGTACCGTGGGTTCGAATCCCAC..CCTCTCCGCCA Rhodoferax_ferrireducens_T118.trna23-SerCGA Sc: 71.03 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAAGCTTGGCAGAGTGGTcgA.TTGCACCGGTCTTGAAAACCGGCAAACC...GAAA....GGTTTCTAGGGTTCGAATCCCTA..AGCTTCCGCCA Rhodoferax_ferrireducens_T118.trna42-SerTGA Sc: 65.00 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>>.....<<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAAACGTGACCGAGTGGCcgA.AGGTGCTCCCCTGCTAAGGGAGT.ATGGGGTGTAGaGCCTCAT.CGAGGGTTCGAATCCCTC..CGTTTCCGCCA Rhodoferax_ferrireducens_T118.trna4-SerGCT Sc: 66.42

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCATTTGGCTCAGT.GGCA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCCCGGGTCCGATTCCCGGAATGGGCACCA Rhodoferax_ferrireducens_T118.trna31-ThrGGT Sc: 83.93 >>>>>.>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<.<<<<<.... GCCGGTGTAGCTCAGTCGGTA.GAGCAGCTCATTCGTAATGAGAAG...........GtCGGGTGTTCGATTCATCTCTCCGGCACCA Rhodoferax_ferrireducens_T118.trna19-ThrCGT Sc: 78.11 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<.... GCCGATTTAGCTCAGTTGGTA.GAGCAACCGCCTTGTAAGCGGTAG...........GtCGTCAGTTCGAATCCGACAATCGGCACCA Rhodoferax_ferrireducens_T118.trna21-ThrTGT Sc: 95.29

Trp tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<.... AGGGGCGTAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAG...........GtTGATGGTTCGATTCCTTCCGCCCCTGCCA Rhodoferax_ferrireducens_T118.trna32-TrpCCA Sc: 82.81

Tyr tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGAGGTGGCCGAGTGGTtaA.TGGCAGCAGACTGTAAATCTGCCCTCTTAC....GAGTaCGATGGTTCGAATCCATC.CCTCTCCACCA Rhodoferax_ferrireducens_T118.trna29-TyrGTA Sc: 70.98

Val tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCGCATAGCTCAGCTGGTtA.GAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGAGTCCAATTGCGCCTACCA Rhodoferax_ferrireducens_T118.trna38-ValGAC Sc: 92.27 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGGTTAGCTCAGG.GGT.A.GAGCACAGCATTCACACTGCTGGG...........GtCGGAGGTTCGAAGCCTCCACCGCCCACCA Rhodoferax_ferrireducens_T118.trna14-ValCAC Sc: 83.69 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTGCTTAGCTCAGTTGGT.A.GAGCGTCTGCCTTACACGCAGAAT...........GtCGGCGGTTCGAGCCCGTCAGCACCCACCA Rhodoferax_ferrireducens_T118.trna15-ValTAC Sc: 94.81

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.