GtRNAdb

tRNAscan-SE Analysis of Rhodoferax ferrireducens T118

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tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
Rhodoferax_ferrireducens_T118_plasmid1 1 142534 142462 Ile GAT    0 0 78.33 61.7616.57 Both
 
Rhodoferax_ferrireducens_T118 1 207459 207534 Arg CCG    0 0 87.79 69.9517.84 Both
Rhodoferax_ferrireducens_T118 2 659339 659412 Gly CCC    0 0 73.68 57.3516.33 Both
Rhodoferax_ferrireducens_T118 3 1447387 1447463 Pro GGG    0 0 81.95 57.9923.96 Both
Rhodoferax_ferrireducens_T118 4 1457493 1457585 Ser GCT    0 0 66.42 32.5033.92 Both
Rhodoferax_ferrireducens_T118 5 1587794 1587870 Arg ACG    0 0 86.55 71.4915.06 Both
Rhodoferax_ferrireducens_T118 6 1606605 1606689 Leu GAG    0 0 65.83 29.5836.25 Both
Rhodoferax_ferrireducens_T118 7 1675287 1675373 Leu TAG    0 0 73.86 48.6425.22 Both
Rhodoferax_ferrireducens_T118 8 1681424 1681499 Gly GCC    0 0 93.66 68.7824.88 Both
Rhodoferax_ferrireducens_T118 9 1681552 1681625 Cys GCA    0 0 55.44 21.7533.69 Both
Rhodoferax_ferrireducens_T118 10 1681638 1681730 Leu TAA    0 0 69.16 46.3622.80 Both
Rhodoferax_ferrireducens_T118 11 1728628 1728702 Arg CCT    0 0 59.82 39.3820.44 Both
Rhodoferax_ferrireducens_T118 12 1791571 1791647 Gln TTG    0 0 73.06 50.7122.35 Both
Rhodoferax_ferrireducens_T118 13 2296385 2296474 Ser GGA    0 0 69.82 48.2221.60 Both
Rhodoferax_ferrireducens_T118 14 2381770 2381844 Val CAC    0 0 83.69 61.0922.60 Both
Rhodoferax_ferrireducens_T118 15 2462673 2462748 Val TAC    0 0 94.81 74.2620.55 Both
Rhodoferax_ferrireducens_T118 16 2464779 2464854 His GTG    0 0 78.52 56.2122.31 Both
Rhodoferax_ferrireducens_T118 17 2583007 2583083 Pro TGG    0 0 91.14 68.0923.05 Both
Rhodoferax_ferrireducens_T118 18 2619696 2619780 Leu CAA    0 0 78.53 53.3925.14 Both
Rhodoferax_ferrireducens_T118 19 2977648 2977723 Thr CGT    0 0 78.11 61.3416.77 Both
Rhodoferax_ferrireducens_T118 20 3122337 3122412 Lys TTT    0 0 87.27 66.2721.00 Both
Rhodoferax_ferrireducens_T118 21 3275036 3275111 Thr TGT    0 0 95.29 76.3218.97 Both
Rhodoferax_ferrireducens_T118 22 3355003 3355078 Lys CTT    0 0 95.89 71.7224.17 Both
Rhodoferax_ferrireducens_T118 23 3591461 3591548 Ser CGA    0 0 71.03 38.2432.79 Both
Rhodoferax_ferrireducens_T118 24 4691721 4691645 Met CAT    0 0 84.99 55.7629.23 Both
Rhodoferax_ferrireducens_T118 25 4118186 4118110 Ile GAT    0 0 88.69 66.5722.12 Both
Rhodoferax_ferrireducens_T118 26 4118083 4118008 Ala TGC    0 0 87.76 76.4111.35 Both
Rhodoferax_ferrireducens_T118 27 4112542 4112466 Ile GAT    0 0 88.69 66.5722.12 Both
Rhodoferax_ferrireducens_T118 28 4112439 4112364 Ala TGC    0 0 87.76 76.4111.35 Both
Rhodoferax_ferrireducens_T118 29 4011260 4011175 Tyr GTA    0 0 70.98 40.3330.65 Both
Rhodoferax_ferrireducens_T118 30 4011086 4011013 Gly TCC    0 0 57.92 26.6231.30 Both
Rhodoferax_ferrireducens_T118 31 4010951 4010877 Thr GGT    0 0 83.93 57.6026.33 Both
Rhodoferax_ferrireducens_T118 32 4009629 4009554 Trp CCA    0 0 82.81 63.7019.11 Both
Rhodoferax_ferrireducens_T118 33 3992132 3992057 Phe GAA    0 0 85.63 69.5916.04 Both
Rhodoferax_ferrireducens_T118 34 3114516 3114440 Arg TCT    0 0 88.58 63.4925.09 Both
Rhodoferax_ferrireducens_T118 35 2951704 2951629 Ala GGC    0 0 83.65 62.5921.06 Both
Rhodoferax_ferrireducens_T118 36 2951570 2951495 Glu TTC    0 0 58.16 25.5632.60 Both
Rhodoferax_ferrireducens_T118 37 2951401 2951325 Asp GTC    0 0 93.78 76.6417.14 Both
Rhodoferax_ferrireducens_T118 38 2703011 2702935 Val GAC    0 0 92.27 66.8025.47 Both
Rhodoferax_ferrireducens_T118 39 2121448 2121364 Leu CAG    0 0 75.32 47.2428.08 Both
Rhodoferax_ferrireducens_T118 40 1702020 1701944 Met CAT    0 0 87.35 67.6519.70 Both
Rhodoferax_ferrireducens_T118 41 1564597 1564522 Asn GTT    0 0 86.50 62.3624.14 Both
Rhodoferax_ferrireducens_T118 42 1524674 1524587 Ser TGA    0 0 65.00 24.7240.28 Both
Rhodoferax_ferrireducens_T118 43 1361190 1361114 Pro CGG    0 0 84.60 57.0027.60 Both
Rhodoferax_ferrireducens_T118 44 378899 378824 Ala CGC    0 0 76.71 61.8614.85 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.