GtRNAdb

tRNAscan-SE Analysis of Rhodopseudomonas palustris BisB5

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
Rhodopseudomonas_palustris_BisB5 43 776886 776811 Ala CGC    0 0 84.51 67.8016.71 Both
Rhodopseudomonas_palustris_BisB5 50 212295 212220 Ala GGC    0 0 87.23 69.2917.94 Both
Rhodopseudomonas_palustris_BisB5 23 4550552 4550477 Ala TGC    0 0 86.35 74.1312.22 Both
Rhodopseudomonas_palustris_BisB5 47 406881 406806 Ala TGC    0 0 86.35 74.1312.22 Both
 
Rhodopseudomonas_palustris_BisB5 51 82028 81952 Arg ACG    0 0 92.98 73.9819.00 Both
Rhodopseudomonas_palustris_BisB5 42 852530 852454 Arg CCG    0 0 86.37 55.7630.61 Both
Rhodopseudomonas_palustris_BisB5 49 307635 307559 Arg CCT    0 0 77.28 47.8529.43 Both
Rhodopseudomonas_palustris_BisB5 15 3446452 3446528 Arg TCG    0 0 85.57 64.1021.47 Both
Rhodopseudomonas_palustris_BisB5 36 2850486 2850410 Arg TCT    0 0 80.78 58.7422.04 Both
 
Rhodopseudomonas_palustris_BisB5 35 2886394 2886320 Asn GTT    0 0 86.74 66.1320.61 Both
 
Rhodopseudomonas_palustris_BisB5 33 3216643 3216567 Asp GTC    0 0 97.02 82.5014.52 Both
 
Rhodopseudomonas_palustris_BisB5 40 2566040 2565965 Cys GCA    0 0 59.10 34.2624.84 Eufind
Rhodopseudomonas_palustris_BisB5 12 2884542 2884615 Cys GCA    0 0 65.24 42.0623.18 Both
 
Rhodopseudomonas_palustris_BisB5 16 3701577 3701650 Gln CTG    0 0 70.05 39.5930.46 Both
Rhodopseudomonas_palustris_BisB5 20 4760534 4760460 Gln TTG    0 0 69.86 41.1528.71 Both
 
Rhodopseudomonas_palustris_BisB5 45 424443 424369 Glu CTC    0 0 68.86 42.2726.59 Both
Rhodopseudomonas_palustris_BisB5 37 2829289 2829215 Glu TTC    0 0 60.15 31.7128.44 Eufind
 
Rhodopseudomonas_palustris_BisB5 4 1026149 1026222 Gly CCC    0 0 80.62 58.6721.95 Both
Rhodopseudomonas_palustris_BisB5 2 524502 524576 Gly GCC    0 0 88.17 69.6718.50 Both
Rhodopseudomonas_palustris_BisB5 29 3563857 3563784 Gly TCC    0 0 82.33 66.4015.93 Both
 
Rhodopseudomonas_palustris_BisB5 7 1620308 1620384 His GTG    0 0 90.83 66.8623.97 Both
 
Rhodopseudomonas_palustris_BisB5 22 4550662 4550586 Ile GAT    0 0 93.43 73.7119.72 Both
Rhodopseudomonas_palustris_BisB5 46 406991 406915 Ile GAT    0 0 93.43 73.7119.72 Both
 
Rhodopseudomonas_palustris_BisB5 48 379530 379446 Leu CAA    0 0 77.17 51.2825.89 Both
Rhodopseudomonas_palustris_BisB5 1 198196 198282 Leu CAG    0 0 75.87 50.8325.04 Both
Rhodopseudomonas_palustris_BisB5 31 3428050 3427966 Leu GAG    0 0 69.13 39.9529.18 Both
Rhodopseudomonas_palustris_BisB5 26 3647533 3647447 Leu TAA    0 0 75.66 44.1831.48 Both
Rhodopseudomonas_palustris_BisB5 32 3226361 3226277 Leu TAG    0 0 78.45 51.5926.86 Both
 
Rhodopseudomonas_palustris_BisB5 9 2369307 2369382 Lys CTT    0 0 97.77 73.9823.79 Both
Rhodopseudomonas_palustris_BisB5 34 2922333 2922258 Lys TTT    0 0 91.05 69.7321.32 Both
 
Rhodopseudomonas_palustris_BisB5 25 4091348 4091273 Met CAT    0 0 80.37 55.9224.45 Both
Rhodopseudomonas_palustris_BisB5 8 1676578 1676654 Met CAT    0 0 83.88 55.3228.56 Both
Rhodopseudomonas_palustris_BisB5 24 4408007 4407931 Met CAT    0 0 89.01 76.4612.55 Both
 
Rhodopseudomonas_palustris_BisB5 21 4739339 4739264 Phe GAA    0 0 88.73 66.8721.86 Both
 
Rhodopseudomonas_palustris_BisB5 6 1410553 1410629 Pro CGG    0 0 85.24 59.0126.23 Both
Rhodopseudomonas_palustris_BisB5 13 3003929 3004006 Pro GGG    0 0 79.64 51.9627.68 Both
Rhodopseudomonas_palustris_BisB5 11 2833690 2833766 Pro TGG    0 0 79.83 55.9723.86 Both
 
Rhodopseudomonas_palustris_BisB5 10 2436981 2437051 Ser CGA    0 0 34.65 20.7913.86 Eufind
Rhodopseudomonas_palustris_BisB5 3 663698 663787 Ser CGA    0 0 76.06 44.4731.59 Both
Rhodopseudomonas_palustris_BisB5 38 2689902 2689809 Ser GCT    0 0 76.24 47.1329.11 Both
Rhodopseudomonas_palustris_BisB5 5 1171800 1171889 Ser GGA    0 0 81.68 52.0829.60 Both
Rhodopseudomonas_palustris_BisB5 39 2681606 2681517 Ser TGA    0 0 83.46 49.9633.50 Both
 
Rhodopseudomonas_palustris_BisB5 44 537639 537564 Thr CGT    0 0 97.39 74.9322.46 Both
Rhodopseudomonas_palustris_BisB5 18 4747188 4747262 Thr GGT    0 0 86.11 64.9521.16 Both
Rhodopseudomonas_palustris_BisB5 27 3588522 3588448 Thr TGT    0 0 83.07 58.4524.62 Both
 
Rhodopseudomonas_palustris_BisB5 30 3553806 3553731 Trp CCA    0 0 91.15 66.6724.48 Both
 
Rhodopseudomonas_palustris_BisB5 28 3585965 3585880 Tyr GTA    0 0 75.58 43.9631.62 Eufind
 
Rhodopseudomonas_palustris_BisB5 41 1630061 1629987 Undet ???    0 0 36.60 12.2024.40 Eufind
 
Rhodopseudomonas_palustris_BisB5 17 4111391 4111465 Val CAC    0 0 81.20 58.8022.40 Both
Rhodopseudomonas_palustris_BisB5 19 4820206 4820132 Val GAC    0 0 89.95 69.2420.71 Both
Rhodopseudomonas_palustris_BisB5 14 3219206 3219282 Val TAC    0 0 92.05 64.7727.28 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.