GtRNAdb

tRNAscan-SE Analysis of Rattus norvegicus (rn5 Mar 2012)

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA406
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
3
Predicted pseudogenes0
Total tRNAs410


Intron Summary

tRNAs with introns
15
Ala
AGC
1
Thr
AGT
1
Arg
TCT
5
Phe
AAA
1
Asp
ATC
2
Ile
TAT
3
Tyr
GTA
2


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
36
GGC
2
CGC
4
TGC
9
51
GlyACC
 
GCC
11
CCC
5
TCC
9
25
ProAGG
33
GGG
 
CGG
3
TGG
6
42
ThrAGT
9
GGT
 
CGT
4
TGT
5
18
ValAAC
8
GAC
 
CAC
7
TAC
3
18

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
11
GGA
 
CGA
3
TGA
4
ACT
1
GCT
12
 
 
 
 
31
ArgACG
6
GCG
 
CCG
3
TCG
5
 
 
 
 
CCT
8
TCT
6
28
LeuAAG
1
GAG
 
CAG
5
TAG
1
 
 
 
 
CAA
 
TAA
3
10

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
8
 
 
 
 
9
AsnATT
 
GTT
15
 
 
 
 
15
Lys 
 
 
 
CTT
19
TTT
1
20
AspATC
2
GTC
15
 
 
 
 
17
Glu 
 
 
 
CTC
8
TTC
10
18
HisATG
 
GTG
10
 
 
 
 
10
Gln 
 
 
 
CTG
10
TTG
6
16

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
12
GAT
 
 
 
TAT
3
15
Met 
 
 
 
CAT
13
 
 
13
TyrATA
 
GTA
2
 
 
 
 
2
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
40
 
 
 
 
40
Trp 
 
 
 
CCA
8
 
 
8
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.