GtRNAdb

tRNAscan-SE Analysis of Rattus norvegicus (rn5 Mar 2012)

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>> Genome Seq
tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr1 5577 190668717 190668789 Ala AGC atgtgagggg aaaaaaaaaa0 0 26.80 20.446.36 Both
chr4 3496 210944016 210944088 Ala AGC agattcgggg aaaaagaata0 0 31.41 15.7215.69 Both
chr17 4640 18392470 18392398 Ala AGC agtctcgagg aaaaagaaaa0 0 31.68 19.7111.97 Both
chr10 3177 64915057 64915124 Ala AGC cttggggttg anaaaaaaaa0 0 33.20 24.059.15 Both
chr4 7798 142219865 142219795 Ala AGC aaaagaggct agcaccaaga0 0 33.33 23.2010.13 Both
chr17 1852 57376425 57376497 Ala AGC tactcatggg aaatagaaaa0 0 33.69 26.157.54 Both
chr1 2584 88670805 88670871 Ala AGC tcggggtggg gggtcnnnnn0 0 34.85 24.989.87 Both
chr4 8533 54352689 54352617 Ala AGC aaactagggg aaaaaaaaaa0 0 36.04 26.629.42 Both
chr7 1874 60728549 60728616 Ala AGC ccaggggttg gaaaaaaaga0 0 36.66 27.948.72 Both
chr17 1771 53858037 53858109 Ala AGC ggccttgggg aaaaaaaaaa0 0 37.02 25.0511.97 Both
chr6 2068 86931415 86931482 Ala AGC gtgagggttg gaaaaaaaaa0 0 39.65 27.4112.24 Both
chr14 6855 2851000 2850928 Ala AGC aaagtcgggg aaaaataaaa0 0 41.50 24.5816.92 Both
chrX 844 33217439 33217511 Ala AGC caagaacggg aaaaaaaaag0 0 42.60 26.7215.88 Both
chr20 1617 21990894 21990974 Ala AGC cagaggggtt gaaaaaaaaa0 0 42.76 21.9620.80 Both
chr18 447 22032449 22032523 Ala AGC tgtttttggg aaaaaaaaaa0 0 43.05 33.169.89 Both
chr10 8140 92455712 92455640 Ala AGC nannnnnnga aaaaaaaaag0 0 43.22 26.3016.92 Both
chr5 4403 153255327 153255399 Ala AGC gtgataaggg aaaaaaaaaa0 0 43.99 28.2415.75 Both
chr4 8166 62476257 62476184 Ala AGC aataaagggg aaaaaaaaaa0 0 44.98 36.808.18 Both
chr17 3929 45922773 45922701 Ala AGC ttcttacatt catgttctca0 0 55.70 34.3521.35 Both
chr3 7632 156516223 156516151 Ala AGC tagtgagggg aaaaaaaaaa0 0 56.34 28.5227.82 Eufind
chr10 7847 96048004 96047933 Ala AGC aatatgatgg agaggggcgg0 0 57.13 40.6916.44 Both
chr4 3912 222222205 222222279 Ala AGC aattccgggg aaagaaaaga0 0 57.27 41.3415.93 Eufind
chr17 1606 45815808 45815880 Ala AGC ttatcagctc gttattacct0 0 57.79 33.7724.02 Both
chr1 6805 225683168 225683240 Ala AGC aattatggct cgcatagttt0 0 58.48 35.5222.96 Both
chr18 3794 32102284 32102212 Ala AGC tgatcagctc gttattacct0 0 59.41 35.5423.87 Both
chr17 3936 45793269 45793197 Ala AGC gccatcagga gttttgcatc0 0 63.06 39.9523.11 Both
chr2 2176 124127980 124128052 Ala AGC cactcgtgga attttcttcc0 0 63.68 41.0222.66 Both
chr6 7740 36671663 36671591 Ala AGC cactacagct cttccttttg0 0 63.68 41.0222.66 Both
chr17 1873 57882894 57882965 Ala AGC ctccgtgtgg gttttcgaga0 0 77.18 53.3823.80 Both
chr17 1876 57895393 57895464 Ala AGC cttccgtgtc gtattttcaa0 0 77.18 53.3823.80 Both
chr17 1886 57987804 57987875 Ala AGC cttccgtgtc gtattttcaa0 0 77.18 53.3823.80 Both
chr17 1878 57907884 57907955 Ala AGC gtccgccagc ttctaaccgt0 0 77.42 52.2625.16 Both
chr17 3708 57999105 57999034 Ala AGC gttcgccagc ttctagccat0 0 77.42 52.2625.16 Both
chr17 3719 57906893 57906822 Ala AGC gttcgccagc ttctagccat0 0 77.42 52.2625.16 Both
chr17 1880 57920181 57920252 Ala AGC tctgggcagt gatttttgat0 0 81.40 56.2825.12 Both
chr2 9413 143980427 143980317 Ala AGC ttttggggtt aaaaaaagaa143980391 143980348 28.38 17.3211.06 Both
chrX 313 15009445 15009516 Ala CGC gacaggggtt cccccaaaaa0 0 59.63 51.538.10 Eufind
chr3 1421 48254989 48255060 Ala CGC cttcaggctg agcagccgta0 0 73.12 53.5119.61 Both
chr17 1879 57916041 57916112 Ala CGC tggtgtaggt aagctttttc0 0 74.81 51.2323.58 Both
chr17 1602 45785667 45785738 Ala CGC tatatcagct gttccttttt0 0 78.91 55.3223.59 Both
chr1 16335 83108552 83108483 Ala GGC gtgaggggct tattaaaaat0 0 36.29 22.5213.77 Both
chr5 7518 163074133 163074062 Ala GGC aaagggagcc aaatggaagg0 0 55.75 43.2312.52 Both
chrX 2304 107032200 107032271 Ala TGC agggaggctt agctttttgc0 0 59.04 45.6913.35 Eufind
chrX 4683 106072322 106072251 Ala TGC atggaggctt agctttttgc0 0 59.04 45.6913.35 Eufind
chr8 799 38076116 38076187 Ala TGC agagaggctt agctttttgt0 0 64.24 45.5518.69 Eufind
chrX 4650 107132846 107132775 Ala TGC ctgccagctt ggtgttccct0 0 66.70 43.1123.59 Both
chr17 1877 57905645 57905716 Ala TGC ttcaggtaca tcttttgagc0 0 71.73 48.4523.28 Both
chr17 1887 57997857 57997928 Ala TGC ttcaggtaca tcttttgagc0 0 71.73 48.4523.28 Both
chr12 5057 38497934 38497863 Ala TGC gttttcgtca ctttttagtt0 0 72.71 49.1223.59 Both
chr10 12492 33966418 33966347 Ala TGC gagagcaggt ggtggttgta0 0 74.45 50.8623.59 Both
chr12 2270 38503098 38503169 Ala TGC aaaagcacca gtttattttt0 0 74.45 50.8623.59 Both
 
chr2 9817 124127016 124126944 Arg ACG cctcatgaat agcttttgga0 0 67.96 51.0616.90 Both
chr17 3669 58926277 58926205 Arg ACG ttatcgtggc gccttgcgtt0 0 68.07 51.1816.89 Both
chr8 4881 131759501 131759429 Arg ACG cctcagcact aaatgtgcgt0 0 68.07 51.1816.89 Both
chr15 1072 37051458 37051530 Arg ACG taatgtctgc ttgggactgg0 0 72.37 52.4919.88 Both
chr17 1588 45708110 45708182 Arg ACG atctagagat gcatccttat0 0 72.37 52.4919.88 Both
chr17 1600 45777879 45777951 Arg ACG tacgtgtacg gaggtgtgcc0 0 72.37 52.4919.88 Both
chr10 5785 94966639 94966711 Arg CCG atcccgtggt cacgctaact0 0 65.49 49.2416.25 Both
chr10 13305 12700576 12700504 Arg CCG gccggcgtag ctgcttgtat0 0 68.22 53.5414.68 Both
chr17 3723 57875532 57875460 Arg CCG cttgccacct gtgtgctttt0 0 69.88 52.7917.09 Both
chr10 4368 82246661 82246733 Arg CCT ctacaagtgg gaaggatcta0 0 60.25 50.839.42 Both
chr4 1517 66087628 66087700 Arg CCT agtactagaa gtgctttttt0 0 67.28 54.1813.10 Both
chr10 13306 12698715 12698643 Arg CCT ctccctgtca agaggttgtg0 0 71.53 57.4814.05 Both
chr10 6258 104313620 104313692 Arg CCT tttttatcgc gtgctctctt0 0 73.41 55.8417.57 Both
chrX 1999 82600032 82600104 Arg CCT tgctgtgtta taagtttgtg0 0 73.52 52.0221.50 Both
chr10 13315 12671216 12671144 Arg CCT gggactagct ggttgagact0 0 73.88 56.3117.57 Both
chr10 7483 104314043 104313971 Arg CCT cgtgctgtgg gaagagtctg0 0 73.88 56.3117.57 Both
chr1 17126 62399052 62398980 Arg CCT atgtaggtgg gaagagtctg0 0 73.88 56.3117.57 Both
chr17 1586 45704268 45704340 Arg TCG ctccatgtgg atctggatag0 0 69.08 49.2019.88 Both
chr17 1884 57945929 57946001 Arg TCG aactcagagc gcaatttttg0 0 69.08 49.2019.88 Both
chr17 1585 45682898 45682970 Arg TCG ctgttcctgt gcaacacttt0 0 69.55 49.6719.88 Both
chr10 7484 104313225 104313153 Arg TCG gccgtaggta aaatattttc0 0 70.52 51.5019.02 Both
chr1 4154 142150840 142150912 Arg TCG ttatgctgac gatcatggtt0 0 76.93 58.3418.59 Both
chr13 2392 96411236 96411309 Arg TCT gtgtggtgag gtcacctggc0 0 76.29 56.9719.32 Both
chr1 11062 235509738 235509653 Arg TCT agacacacct cttttatttt235509701 235509689 70.50 50.0520.45 Both
chr2 6815 243908171 243908087 Arg TCT tccaacaggt cgacgtttta243908134 243908123 71.18 52.8818.30 Both
chr17 1618 46026265 46026363 Arg TCT ctttatgaat ttgttttcat46026303 46026327 50.24 30.7319.51 Both
chr10 11253 55453253 55453167 Arg TCT cccgccaggt attttatttt55453216 55453203 71.15 50.7020.45 Both
chr17 3688 58793975 58793890 Arg TCT caaccaagtg ggtatctttt58793938 58793926 71.85 52.7719.08 Both
 
chr11 758 40464446 40464520 Asn GTT tgtgtggctt tcatgtgttt0 0 34.41 19.3215.09 Both
chr11 807 42863403 42863477 Asn GTT tgtgtggctt tcatgtgttt0 0 34.41 19.3215.09 Both
chr1 6795 225624340 225624412 Asn GTT aaaaacaagt tctcatggct0 0 62.10 45.8216.28 Both
chr10 4060 75365114 75365187 Asn GTT atattctagt agtacctctc0 0 67.33 50.4716.86 Eufind
chr6 8393 5661930 5661857 Asn GTT aaaggtaacc acaagtatag0 0 76.67 58.0418.63 Both
chr2 4360 217968880 217968953 Asn GTT ctctccctgt tctcgtggct0 0 80.50 57.2323.27 Both
chr2 4369 218028200 218028273 Asn GTT agattcatat agccttttaa0 0 80.50 57.2323.27 Both
chr10 8986 85436542 85436469 Asn GTT aaccatcgcc gtttgtatat0 0 82.24 58.9723.27 Both
chr12 323 9017899 9017972 Asn GTT tggcagctgg gcagctttca0 0 82.24 58.9723.27 Both
chr13 4013 94039318 94039245 Asn GTT agcatcacct gtgggagcat0 0 82.24 58.9723.27 Both
chr17 2913 87003083 87003010 Asn GTT gagcaccaaa ccctagcttt0 0 82.24 58.9723.27 Both
chr2 4383 218121961 218122034 Asn GTT taccctgcat gtgccttttg0 0 82.24 58.9723.27 Both
chr2 7572 218083856 218083783 Asn GTT cttcaacacc acggcgcctg0 0 82.24 58.9723.27 Both
chr7 8977 12496056 12495983 Asn GTT tcacaatgtc actatgattc0 0 82.24 58.9723.27 Both
chr2 4364 217981144 217981217 Asn GTT ttgtccttgt agtacctttc0 0 83.49 61.0122.48 Both
 
chr1 6654 222166657 222166736 Asp ATC agtgaggaac gaagaaaaac222166693 222166702 36.09 16.2319.86 Both
chr1 6738 224467054 224467133 Asp ATC agtgaggaac gaagaaaaac224467090 224467099 36.09 16.2319.86 Both
chrX 6893 10897530 10897459 Asp GTC ttataagtca acattgaagt0 0 65.23 46.4718.76 Both
chrX 6913 10215492 10215421 Asp GTC ttataagtca acattgaagt0 0 65.23 46.4718.76 Both
chr10 2466 55364090 55364161 Asp GTC ttcagcttat gaagtgtact0 0 72.92 48.3824.54 Both
chr12 2267 38498463 38498534 Asp GTC gaatggctag gctgcgcatg0 0 72.92 48.3824.54 Both
chr12 2269 38501781 38501852 Asp GTC tcagctctct attgtcaaac0 0 72.92 48.3824.54 Both
chr13 2243 94071463 94071534 Asp GTC gctgtcgtcg acatgatgtc0 0 72.92 48.3824.54 Both
chr13 2249 94095976 94096047 Asp GTC acagatgtcg acataaggag0 0 72.92 48.3824.54 Both
chr13 3843 95751497 95751426 Asp GTC gctgtcgtcg acatgatgtc0 0 72.92 48.3824.54 Both
chr13 3850 95700507 95700436 Asp GTC gctgtcgtcg acatgatgtc0 0 72.92 48.3824.54 Both
chr13 3853 95680683 95680612 Asp GTC gctgtcgtcg acatgatgtc0 0 72.92 48.3824.54 Both
chr13 4004 94077340 94077269 Asp GTC gtctctgtcg acattgaagt0 0 72.92 48.3824.54 Both
chr13 4012 94042774 94042703 Asp GTC attacggttg acgcgtaact0 0 72.92 48.3824.54 Both
chr13 4025 93938071 93938000 Asp GTC gctgtcgtcg acatgatgtc0 0 72.92 48.3824.54 Both
chr7 8266 34353143 34353072 Asp GTC gctgtgcagt gcataatgac0 0 72.92 48.3824.54 Both
chr7 8336 31970686 31970615 Asp GTC tcctcacagc gttgtaaaca0 0 74.76 50.2124.55 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr4 5959 214657188 214657117 Cys GCA aagttaagca tatcctctca0 0 55.50 37.4718.03 Both
chr4 7756 142619469 142619398 Cys GCA cggtatcagt tctcatgtga0 0 63.68 50.1813.50 Both
chr4 1774 142505252 142505323 Cys GCA cctcagccat attggtatct0 0 67.15 49.3317.82 Both
chr4 1777 142521612 142521683 Cys GCA atatataagt accttttgtc0 0 67.56 53.2714.29 Both
chr14 5943 32825219 32825148 Cys GCA acgagtcact ttccatagat0 0 72.04 57.9414.10 Both
chr4 1769 142474425 142474496 Cys GCA cggtatcagt tttcatgtga0 0 73.11 53.9419.17 Both
chr10 8976 85501919 85501848 Cys GCA gagaaggtga tccttttgtt0 0 73.73 55.8117.92 Both
chr4 1767 142459454 142459525 Cys GCA actggtcagt tatttatgtc0 0 74.20 55.0219.18 Both
chr4 1768 142473410 142473481 Cys GCA gtaaacaggt accacacatt0 0 74.20 55.0219.18 Both
chr4 1770 142477423 142477494 Cys GCA ataaacaggt tcctaaggtt0 0 74.20 55.0219.18 Both
chr4 1771 142483584 142483655 Cys GCA ataaacaggt gcctttcttt0 0 74.20 55.0219.18 Both
chr4 1787 142643193 142643264 Cys GCA taaagcagaa tcttattgtc0 0 74.20 55.0219.18 Both
chr4 1788 142644172 142644243 Cys GCA cctacaaagt tgctttaata0 0 74.20 55.0219.18 Both
chr4 7739 142987162 142987091 Cys GCA gcaagggcaa ttaggtatct0 0 74.20 55.0219.18 Both
chr4 7751 142656059 142655988 Cys GCA tggtaccagt tatttatgtc0 0 74.20 55.0219.18 Both
chr4 7752 142632135 142632064 Cys GCA ataaacaggt accacacatt0 0 74.20 55.0219.18 Both
chr4 7753 142631154 142631083 Cys GCA tggtaccaat ttttgtctga0 0 74.20 55.0219.18 Both
chr4 7754 142624119 142624048 Cys GCA ataaacaggt tcctaaggtt0 0 74.20 55.0219.18 Both
chr4 7755 142620481 142620410 Cys GCA ataaacaggt aacaaaagtt0 0 74.20 55.0219.18 Both
chr4 7757 142613446 142613375 Cys GCA ataaacaggt aacaaaagtt0 0 74.20 55.0219.18 Both
chr4 7758 142612431 142612360 Cys GCA tggtaccagt tttcatgtga0 0 74.20 55.0219.18 Both
chr4 7760 142577122 142577051 Cys GCA ataaacaggt accacacatt0 0 74.20 55.0219.18 Both
chr4 7761 142576131 142576060 Cys GCA tgataccagt tttcatgtga0 0 74.20 55.0219.18 Both
chr4 7762 142573275 142573204 Cys GCA ataaacaggt accacacatt0 0 74.20 55.0219.18 Both
chr4 7767 142531613 142531542 Cys GCA gcaagaaggt tgccagattc0 0 74.20 55.0219.18 Both
chr4 7771 142465902 142465831 Cys GCA taaagcagaa tcttattgtc0 0 74.20 55.0219.18 Both
chr4 7772 142464938 142464867 Cys GCA cctataaggt tgttttaata0 0 74.20 55.0219.18 Both
chr8 3638 112335568 112335639 Cys GCA ctgtctcact gtgcactctt0 0 74.20 55.0219.18 Both
chr4 1776 142519538 142519609 Cys GCA ataagcaggt attttttccc0 0 74.26 55.0219.24 Both
chr4 7738 142988741 142988670 Cys GCA ataaacaggt tccctttttt0 0 76.09 55.4520.64 Both
chr4 7766 142544681 142544610 Cys GCA ataaacaggt tccctttttt0 0 76.09 55.4520.64 Both
chr4 7769 142524234 142524163 Cys GCA atggcaggaa agtaattgtg0 0 76.09 55.4520.64 Both
chr4 7765 142550507 142550436 Cys GCA tattagtaaa actcataatt0 0 77.16 54.5022.66 Both
chr10 8966 85532790 85532719 Cys GCA gtggccgtgc cggagtcttt0 0 77.18 59.2617.92 Both
chr6 7897 33353207 33353136 Cys GCA agtggtcact tttcacagac0 0 77.65 58.4819.17 Both
chr8 3639 112338993 112339064 Cys GCA gttggccacg gagttaggct0 0 77.65 58.4819.17 Both
chr10 4794 85531000 85531071 Cys GCA caccagcaga tgatgtttgt0 0 77.71 58.4719.24 Both
chr10 8932 85729081 85729010 Cys GCA tcagcggact cgcggttatc0 0 77.71 58.4719.24 Both
chr10 8933 85728409 85728338 Cys GCA tgccagcaga gctaggtttt0 0 77.71 58.4719.24 Both
chr4 1756 142317978 142318049 Cys GCA cctaccagca tcctttccca0 0 77.71 58.4719.24 Both
 
chr2 4382 218102322 218102393 Gln CTG acagtgtatg ttctgtttac0 0 68.61 50.0218.59 Both
chr2 4450 219335114 219335185 Gln CTG ccacatatat atctctttag0 0 69.34 47.7621.58 Both
chr2 7583 218024050 218023979 Gln CTG aagctatgtg ttagtggtga0 0 69.34 47.7621.58 Both
chr17 1911 58796727 58796798 Gln CTG aaggcgaggt agctggcttt0 0 70.99 53.7417.25 Both
chr17 3673 58893713 58893642 Gln CTG cacactgtgt gtggtgtttt0 0 72.91 51.3321.58 Both
chr2 7588 217991070 217990999 Gln CTG agtatgcatg ctctctttac0 0 72.91 51.3321.58 Both
chr10 11252 55454210 55454139 Gln CTG gagaagaggg taagttttgc0 0 73.65 50.3623.29 Both
chr17 1868 57836792 57836863 Gln CTG taggtagggt ttttgcattt0 0 73.65 50.3623.29 Both
chr8 2095 69919512 69919583 Gln CTG ccttcgtgct gctcttttct0 0 73.65 50.3623.29 Both
chr17 3684 58810057 58809986 Gln CTG aaagtcgtgg agtttgtttt0 0 75.10 51.8123.29 Both
chrM 4 3831 3761 Gln TTG ccttactatg aaataagagg0 0 45.02 13.1631.86 Both
chr17 3717 57935502 57935431 Gln TTG atcttttgtc acaaaggctc0 0 65.84 45.8919.95 Both
chr17 3954 45690812 45690741 Gln TTG cagtgtcatg aatgttaatt0 0 68.31 52.3116.00 Both
chr17 3955 45690278 45690207 Gln TTG cctcatgtgt gttttccttt0 0 68.31 52.3116.00 Both
chrX 146 10602975 10603046 Gln TTG gcagcaaggt tggaacgact0 0 69.27 50.0519.22 Both
chr10 9239 83476013 83475942 Gln TTG gccgccagca cactgaacct0 0 73.77 50.8322.94 Both
 
chr4 7782 142340161 142340090 Glu CTC gtatgaaatt gttaagtttg0 0 57.48 45.2812.20 Both
chr13 4006 94076225 94076155 Glu CTC taatacatac gcctctcttc0 0 61.98 46.4015.58 Both
chr10 11803 43533139 43533068 Glu CTC tactatctct gtacactttt0 0 76.61 53.9422.67 Both
chr1 17865 30658033 30657962 Glu CTC cccagcaagc gtactgtttt0 0 76.61 53.9422.67 Both
chr13 2251 94096808 94096879 Glu CTC ctactgtccc gctgcctttt0 0 76.61 53.9422.67 Both
chr17 3727 57827528 57827457 Glu CTC tcttgcgagt gtagggcttt0 0 76.61 53.9422.67 Both
chr2 7561 218125912 218125841 Glu CTC gcaaccagct atactgtttt0 0 76.61 53.9422.67 Both
chr2 7565 218119023 218118952 Glu CTC gcaaccagct atactgtttt0 0 76.61 53.9422.67 Both
chr16 1052 35939543 35939614 Glu TTC tttatgtgtg cgtgcttcta0 0 55.40 41.9213.48 Both
chr2 4366 218000992 218001063 Glu TTC ctttcgtcgc gaccttttga0 0 72.33 49.6622.67 Both
chr2 4370 218032118 218032189 Glu TTC tttctgtgtg tgtatttcca0 0 72.33 49.6622.67 Both
chr15 4154 59183179 59183108 Glu TTC tcttagaagc ttctttgggg0 0 74.37 53.3021.07 Both
chr15 2212 65437019 65437090 Glu TTC tagtagcact cagtatagct0 0 75.00 51.6923.31 Both
chr9 932 37468222 37468293 Glu TTC taccggcagc cagctctttt0 0 75.00 51.6923.31 Both
chr1 3680 116895214 116895285 Glu TTC cctcgtcagt caaaagaccc0 0 76.26 53.7222.54 Both
chr15 2099 61928748 61928819 Glu TTC gcttgtcgtc cgccaaagtc0 0 76.26 53.7222.54 Both
chr17 3939 45759571 45759500 Glu TTC gagtagaagc ccttgttctt0 0 76.26 53.7222.54 Both
chr8 6038 112344545 112344474 Glu TTC cagcatcagt catgagatct0 0 76.26 53.7222.54 Both
 
chr2 7585 218004617 218004547 Gly CCC cttcaagggt acatcctttt0 0 73.00 52.9520.05 Both
chr2 7579 218050757 218050687 Gly CCC ccctaacggt gtgcgttctt0 0 76.37 56.3220.05 Both
chr10 705 15054081 15054151 Gly CCC ttactcaaca tgttcgtttt0 0 76.98 51.0525.93 Both
chr4 2752 182778746 182778816 Gly CCC aatcccaaca tgtcttttgt0 0 76.98 51.0525.93 Both
chr2 4358 217947735 217947805 Gly CCC tctacaggga gagtctctgt0 0 80.05 60.0020.05 Both
chr5 12864 13801822 13801746 Gly GCC aaagtcaggg agaaaaaaaa0 0 33.64 13.4020.24 Both
chr13 2376 95723974 95724044 Gly GCC tgtgttcagg gagtccagtc0 0 79.48 59.9219.56 Both
chr10 11254 55448680 55448610 Gly GCC taactcatct tatgctgcct0 0 81.62 61.5720.05 Both
chr13 2238 94050532 94050602 Gly GCC cttccgccag cgctgtcctt0 0 81.62 61.5720.05 Both
chr17 1897 58619471 58619541 Gly GCC cctggtcaag gatataccac0 0 81.62 61.5720.05 Both
chr19 1527 51842838 51842908 Gly GCC cacagctgga gagccttttt0 0 81.62 61.5720.05 Both
chr19 1528 51843600 51843670 Gly GCC cacagctgga gtagcaatat0 0 81.62 61.5720.05 Both
chr19 3490 54011276 54011206 Gly GCC ctacagccaa cggtctcttt0 0 81.62 61.5720.05 Both
chr3 10899 48255376 48255306 Gly GCC gctcgtgctt gttccccttt0 0 81.62 61.5720.05 Both
chr13 2246 94080602 94080672 Gly GCC tacagccagg aagtttagtc0 0 82.15 62.5819.57 Both
chr13 2377 95724295 95724365 Gly GCC tgtgttcagg gagtccagtc0 0 82.15 62.5819.57 Both
chr13 5421 52755813 52755742 Gly TCC gggatctgca gcatgcccaa0 0 53.66 43.3710.29 Both
chr13 2250 94096476 94096547 Gly TCC cattggcgtt tggtgtgcct0 0 71.45 51.6519.80 Both
chr13 4005 94076719 94076648 Gly TCC acttcgtgag gcgggttcaa0 0 71.45 51.6519.80 Both
chr10 11264 55364590 55364519 Gly TCC tctttcacct agggttagtt0 0 73.26 52.8320.43 Both
chr13 3842 95755523 95755452 Gly TCC cggctgtgcg gcgtgcccaa0 0 73.26 52.8320.43 Both
chr13 3846 95722377 95722306 Gly TCC cggctgtgcg gcgtgcccaa0 0 73.26 52.8320.43 Both
chr13 4011 94043711 94043640 Gly TCC gtgttgtgct gactatactt0 0 73.26 52.8320.43 Both
chr2 7562 218125516 218125445 Gly TCC ttgttagcct tagggttgcc0 0 73.26 52.8320.43 Both
chr2 7566 218118627 218118556 Gly TCC ttgttagcct tagggttgcc0 0 73.26 52.8320.43 Both
 
chr19 4063 46574938 46574867 His GTG cgcgtggctc cgtcgttctt0 0 64.63 37.1827.45 Both
chr2 4371 218033990 218034061 His GTG cacgtggctc gtgtagtact0 0 64.63 37.1827.45 Both
chr2 4377 218065419 218065490 His GTG cgtgtggttc tgaccggtga0 0 64.63 37.1827.45 Both
chr2 7563 218124827 218124756 His GTG ccggtggctc tttggtagta0 0 64.63 37.1827.45 Both
chr2 7567 218117938 218117867 His GTG ccggtggctc tttggtagta0 0 64.63 37.1827.45 Both
chr2 7573 218082866 218082795 His GTG cgcgtggctc cgtcgttctt0 0 64.63 37.1827.45 Both
chr3 3497 120854970 120855041 His GTG ccggtagctc ttgtggcaac0 0 64.63 37.1827.45 Both
chr3 8790 120854425 120854354 His GTG ccggtagctc ttgtggcaac0 0 64.63 37.1827.45 Both
chr3 8791 120852919 120852848 His GTG ctggtagctc ttgtggcaac0 0 64.63 37.1827.45 Both
chr5 10845 104798442 104798371 His GTG tcagtagctc ggattgagga0 0 64.63 37.1827.45 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr3 8988 118544601 118544530 Ile AAT aggagctcca ccaaagaacg0 0 47.46 33.5613.90 Both
chr10 1152 28775713 28775786 Ile AAT aaacatcggt catatgtgat0 0 55.05 48.017.04 Eufind
chr5 5633 163469626 163469699 Ile AAT acaagcagtt aagcctgaga0 0 57.39 43.2614.13 Eufind
chr17 1616 45916256 45916329 Ile AAT gctgccaact tacataattt0 0 63.77 55.308.47 Both
chr17 1920 58934828 58934901 Ile AAT cttgtgaagt gaaggagctt0 0 76.11 57.6218.49 Both
chr17 3693 58741542 58741469 Ile AAT tataatatat gtaaggtatc0 0 78.44 59.9618.48 Both
chr10 11263 55387785 55387712 Ile AAT cttcacatct gtattttttt0 0 80.66 62.1718.49 Both
chr10 2462 55360102 55360175 Ile AAT taccgtggat gaccctcaaa0 0 80.66 62.1718.49 Both
chr17 1603 45786254 45786327 Ile AAT tcgcatgcct agtttctctt0 0 80.66 62.1718.49 Both
chr17 3691 58763867 58763794 Ile AAT tgatacagtt ctagttgaag0 0 80.66 62.1718.49 Both
chr2 6010 284941205 284941278 Ile AAT cctcgaatct gaagcgcaag0 0 80.66 62.1718.49 Both
chr6 4616 145147590 145147517 Ile AAT aactccatct gaagcgcaaa0 0 80.66 62.1718.49 Both
chr17 3689 58772987 58772894 Ile TAT gagaaagcat tgttttcttc58772949 58772930 67.58 39.3928.19 Both
chr6 245 7023025 7023117 Ile TAT ccacagcgga cgattctttt7023063 7023081 67.47 39.2828.19 Both
chr1 16068 86601200 86601107 Ile TAT tgcggccgga cttccttttt86601162 86601143 68.37 40.1828.19 Both
 
chr4 6448 191452874 191452793 Leu AAG agacagtgga gtagcttagt0 0 57.92 47.8410.08 Both
chr13 3830 96493702 96493620 Leu CAG tgctcagtgt actagtgttt0 0 53.73 34.2519.48 Both
chr13 2225 93938654 93938736 Leu CAG cagacctgct agcttgcctt0 0 66.61 45.1021.51 Both
chr13 2370 95701090 95701172 Leu CAG cagacctgct agcttgcctt0 0 66.61 45.1021.51 Both
chr13 2382 95752080 95752162 Leu CAG cagacctgct agcttgcctt0 0 66.61 45.1021.51 Both
chr13 2365 95681267 95681349 Leu CAG cagacctgct agcttgcctt0 0 77.22 46.8930.33 Both
chrM 1 2665 2739 Leu TAA agcccaggtt gtgtacttta0 0 38.51 15.4423.07 Both
chr1 18389 8655609 8655527 Leu TAA gcacgcctgc atgtgaactt0 0 77.01 48.4028.61 Both
chr1 11063 235509233 235509151 Leu TAA cccttcaagt aatctgcttt0 0 80.01 46.6233.39 Both
chr1 12832 197697796 197697715 Leu TAG agaaatggga catccctagg0 0 68.14 45.5422.60 Both
 
chr13 2707 104189471 104189536 Lys CTT gggccagaga cgtggtggct0 0 23.19 13.1810.01 Both
chr5 1995 90153653 90153725 Lys CTT atgtgagcta ccacctgttg0 0 42.78 31.7011.08 Both
chr1 9546 278993707 278993635 Lys CTT cttcctctac ccatctgttg0 0 58.09 41.9216.17 Eufind
chr1 9582 275642444 275642372 Lys CTT cttcctctac ccatctgttg0 0 58.09 41.9216.17 Eufind
chr17 719 16522086 16522158 Lys CTT ccccctatat ccagttgttg0 0 60.96 45.6315.33 Eufind
chr2 2839 161575674 161575746 Lys CTT cttgtgtcag ccaatttatt0 0 62.11 51.9710.14 Both
chr1 9032 279075322 279075394 Lys CTT agaccccatg ccatctattg0 0 63.42 55.707.72 Eufind
chr1 9587 275347507 275347435 Lys CTT agaccccatg ccatctattg0 0 63.42 55.707.72 Eufind
chr9 186 9673098 9673170 Lys CTT ggtgtctttt ccatctattg0 0 64.78 42.3422.44 Both
chr10 12493 33965938 33965866 Lys CTT tctgcacagc caagtaaatg0 0 80.47 57.8122.66 Both
chr10 13308 12682537 12682465 Lys CTT ttgctatgca tagctatttt0 0 80.47 57.8122.66 Both
chr10 13312 12675711 12675639 Lys CTT gagagcagtt gctacacatt0 0 80.47 57.8122.66 Both
chr10 13313 12674107 12674035 Lys CTT atcgcaggac agctatcatt0 0 80.47 57.8122.66 Both
chr10 465 12697396 12697468 Lys CTT atttatcgcc gatacttttg0 0 80.47 57.8122.66 Both
chr2 4376 218055783 218055855 Lys CTT tcacaggagc catgctttta0 0 80.47 57.8122.66 Both
chr2 7564 218124000 218123928 Lys CTT gacctacaga cttccctttt0 0 80.47 57.8122.66 Both
chr2 7568 218117111 218117039 Lys CTT gacctacaga cttccctttt0 0 80.47 57.8122.66 Both
chr7 2975 106980542 106980614 Lys CTT aataaacagc caagcaaatg0 0 80.47 57.8122.66 Both
chr6 6230 102863465 102863393 Lys CTT gctttcgtcc ttgcgttttt0 0 80.72 58.2822.44 Both
chr17 1908 58783020 58783092 Lys TTT ctctataaga aaaggtcaca0 0 80.08 62.4317.65 Both
 
chr17 3930 45912371 45912299 Met CAT aggcctcata gtctcttgca0 0 61.05 38.1722.88 tRNAscan
chr17 3952 45692336 45692265 Met CAT ctcacgcgtc ggtggtacct0 0 67.60 39.5928.01 Both
chr11 1981 85351600 85351671 Met CAT tatagaagct tgtgatggtc0 0 68.98 40.9628.02 Both
chr17 1584 45678663 45678734 Met CAT tctactagct tgtgatggtc0 0 68.98 40.9628.02 Both
chr17 1898 58619888 58619959 Met CAT tgctagctct agaagcaatt0 0 68.98 40.9628.02 Both
chr17 1907 58782234 58782305 Met CAT attataatat gttggcattt0 0 68.98 40.9628.02 Both
chr17 1918 58871868 58871939 Met CAT tcaacatgtt ttaagctttt0 0 68.98 40.9628.02 Both
chr17 3685 58806929 58806858 Met CAT cttgcacaat tgaaattatt0 0 68.98 40.9628.02 Both
chr2 7907 209296597 209296526 Met CAT accagtaggt tcggagactt0 0 68.98 40.9628.02 Both
chr17 1866 57832441 57832513 Met CAT agaatcactt acttcttttc0 0 74.93 54.7820.15 Both
chr17 3725 57834570 57834498 Met CAT agcattgggc gccaacacat0 0 76.58 56.4420.14 Both
chr19 3057 64363675 64363603 Met CAT ttgctaagga tcctgcatta0 0 79.85 59.4920.36 Both
chr7 6637 98452274 98452202 Met CAT gctcgcaggt caatactttt0 0 79.85 59.4920.36 Both
 
chr8 4604 125618575 125618715 Phe AAA gctacgggct cagagtggct125618611 125618681 34.57 18.6715.90 Both
chrX 1633 71427699 71427772 Phe GAA gtacaacaaa gaggtttact0 0 75.00 53.3821.62 Both
chr17 3690 58764666 58764594 Phe GAA gaaccagtaa gaggtttact0 0 79.89 61.2718.62 Both
chr1 7480 235506333 235506405 Phe GAA caccatcttc agtctctgtt0 0 82.59 59.4423.15 Both
chr12 2268 38501326 38501398 Phe GAA agcaacggcc gcttacgttt0 0 84.19 62.5821.61 Both
chr15 3310 106735921 106735849 Phe GAA gaggcgcagc gctggttttt0 0 84.19 62.5821.61 Both
chr17 1865 57828074 57828146 Phe GAA ctagggtggg gctattttct0 0 84.19 62.5821.61 Both
chr1 7479 235499514 235499586 Phe GAA cataagcaca gtggttttgt0 0 84.19 62.5821.61 Both
chr7 427 12496179 12496251 Phe GAA ccttcacgca gaggttttta0 0 84.19 62.5821.61 Both
 
chr5 3067 137696877 137696950 Pro AGG caggctaggg gctaagagca0 0 26.05 19.886.17 Both
chr13 5574 44632625 44632547 Pro AGG aattcagggg aaagaaccaa0 0 29.58 18.8610.72 Both
chr1 1126 48689534 48689606 Pro AGG attctcgggg aaaaagaacc0 0 29.78 24.395.39 Both
chr20 3374 46474007 46473941 Pro AGG tgggggctgg gaaaaaagaa0 0 30.36 20.0410.32 Both
chr5 4681 155222288 155222357 Pro AGG gttttggggc aaaaaaaaaa0 0 30.95 20.1910.76 Both
chr4 8498 56156164 56156092 Pro AGG tggtttgggg aaaaaaaaaa0 0 31.02 20.4410.58 Both
chr3 2069 68483284 68483356 Pro AGG agattcgggg aaaaaaaaaa0 0 31.73 24.876.86 Both
chr10 1930 43978759 43978831 Pro AGG atctttgggg aaaaaaaaaa0 0 31.93 19.9711.96 Both
chr4 7464 153316468 153316396 Pro AGG ggcacaaggg ggaaaaaaaa0 0 32.16 26.375.79 Both
chr10 1360 34928031 34928097 Pro AGG aaggggttga aaaaaaagaa0 0 32.91 26.366.55 Both
chr4 9570 2120783 2120710 Pro AGG ccccatgggg aaaagaaaaa0 0 33.73 28.065.67 Both
chr2 10122 101925703 101925635 Pro AGG taggaaggct aaaaaaaaaa0 0 35.04 29.565.48 Both
chr13 587 47081314 47081386 Pro AGG cctgatggct aaaacaggaa0 0 36.43 20.1216.31 Both
chr14 6749 5179906 5179834 Pro AGG acaaaggggg aaaaaaaacc0 0 37.95 25.9811.97 Both
chr2 490 45312789 45312861 Pro AGG gtcaccgggg aaaaaaaaaa0 0 37.95 25.9811.97 Both
chr4 8943 27785085 27785013 Pro AGG gggctggggg aaaaaaaaaa0 0 37.95 25.9811.97 Both
chrX 2491 114915390 114915462 Pro AGG aaaacagggg aaaaagaacc0 0 37.95 25.9811.97 Both
chr19 2310 66881000 66881068 Pro AGG ggatggggtt gggaaaaaaa0 0 54.77 48.825.95 Both
chr11 3961 51041660 51041592 Pro AGG tgggggggtt aaaaaaaaaa0 0 55.08 44.1510.93 Eufind
chr8 5399 119451050 119450982 Pro AGG tctcggggtt aaaaaaaaaa0 0 55.08 44.1510.93 Eufind
chr17 1510 43050738 43050806 Pro AGG aatgggggtt aaaaaaaaaa0 0 55.62 50.245.38 Eufind
chr3 10045 77831224 77831151 Pro AGG aaaggagagg aaaaaaagaa0 0 55.93 47.738.20 Eufind
chr7 3035 112586447 112586520 Pro AGG agaagtgggg aaaaagaaaa0 0 56.35 45.2611.09 Eufind
chr8 5880 115483412 115483344 Pro AGG tgaaggggct aaaaaaagga0 0 57.30 50.157.15 Eufind
chr5 9963 138847760 138847692 Pro AGG aagtggggtt aaaaaaagaa0 0 58.59 46.5812.01 Eufind
chr2 2771 159890892 159890963 Pro AGG agtcttacat atctttagct0 0 70.27 52.0218.25 Both
chr10 13311 12678652 12678581 Pro AGG ctattggtgt gcttagtatt0 0 75.92 53.8522.07 Both
chr10 13314 12673693 12673622 Pro AGG caatactcaa tcctgttttt0 0 75.92 53.8522.07 Both
chr1 13666 169977341 169977270 Pro AGG taccgccagt agtcttttta0 0 75.92 53.8522.07 Both
chr13 2042 88728002 88728073 Pro AGG gacgcacatc aacttttaaa0 0 75.92 53.8522.07 Both
chr15 5212 31822970 31822899 Pro AGG gttacccggt ttcattttgc0 0 75.92 53.8522.07 Both
chr17 1604 45787848 45787919 Pro AGG ctctctatct aaattttaat0 0 75.92 53.8522.07 Both
chr4 1086 56433550 56433621 Pro AGG aattgccagt tgttttatcc0 0 75.92 53.8522.07 Both
chr10 2465 55363521 55363592 Pro CGG gtcacacgtc catattatct0 0 76.52 54.4622.06 Both
chr10 464 12682285 12682356 Pro CGG gtagctgtgt tggagggggt0 0 76.52 54.4622.06 Both
chr13 4171 88728705 88728634 Pro CGG cgctgagagc tggttttgtt0 0 76.52 54.4622.06 Both
chr10 1314 33989496 33989567 Pro TGG catatcagct aaatgtttta0 0 76.15 54.0922.06 Both
chr10 13307 12696544 12696473 Pro TGG tcggcacagt atctttttaa0 0 76.15 54.0922.06 Both
chr10 13310 12679750 12679679 Pro TGG gctgtgaact ggtataaagg0 0 76.15 54.0922.06 Both
chr15 917 31849911 31849982 Pro TGG actgtgctat tgcacttttt0 0 76.15 54.0922.06 Both
chr2 2770 159889905 159889976 Pro TGG tgtgctcagc agctatttta0 0 76.15 54.0922.06 Both
chr1 4916 169977022 169977093 Pro TGG tttgatagct ctcttttcct0 0 76.24 54.2322.01 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr1 2048 81479463 81479548 SeC(e) TCA agttgtctct gggagtatct0 0 75.67 0.000.00 Eufind
 
chr17 3932 45849747 45849674 Ser ACT gcttatcagt tatgtggggt0 0 54.75 42.7811.97 Both
chr15 994 32533789 32533870 Ser AGA aggtgtatat ataaatatta0 0 55.97 36.2319.74 Eufind
chr5 6200 171414140 171414211 Ser AGA ttgaggggcc aaacagggtg0 0 57.51 46.2611.25 Eufind
chr19 372 27434085 27434159 Ser AGA ggttttgggg aaaagaaaaa0 0 60.41 48.3412.07 Eufind
chr17 3682 58813488 58813407 Ser AGA attatgtttt ggtgttttct0 0 73.86 51.1622.70 Both
chr17 1587 45707665 45707746 Ser AGA tatagcactt gctgtgggct0 0 83.71 55.5928.12 Both
chr17 3680 58823759 58823678 Ser AGA acctagttgt ggctatttta0 0 86.04 54.9331.11 Both
chr17 1912 58803947 58804027 Ser AGA ttacttccat acaatcttat0 0 86.11 52.3833.73 Both
chr10 2463 55360576 55360657 Ser AGA cagaagttct tctaactttt0 0 86.58 53.4433.14 Both
chr17 1910 58795943 58796024 Ser AGA acttacagct aactgatctg0 0 88.01 56.9031.11 Both
chr5 455 28086029 28086110 Ser AGA agcatcacca gtaagagaat0 0 88.01 56.9031.11 Both
chr5 476 28872791 28872872 Ser AGA agcatcacca gtaagagaat0 0 88.01 56.9031.11 Both
chr17 3668 58927609 58927528 Ser CGA gctcgagtga tatgagaggt0 0 86.89 57.2529.64 Both
chr7 9348 2851289 2851208 Ser CGA agttttggga gtagctcttc0 0 89.14 63.5025.64 Both
chr10 2475 55440598 55440679 Ser CGA gccgcacgcg ctagtagttt0 0 92.58 63.3929.19 Both
chr17 3699 58355241 58355160 Ser GCT gtttccatag acttactatc0 0 49.32 31.6117.71 Both
chr17 3664 59116350 59116269 Ser GCT ggtatgcttt gtctgccttt0 0 64.42 45.0119.41 Eufind
chr17 3665 58979059 58978978 Ser GCT ggtatgcttt gtctgccttt0 0 64.42 45.0119.41 Eufind
chr1 5424 183256734 183256815 Ser GCT gactgaggag ttggccctta0 0 67.60 46.6420.96 Both
chr4 7087 169900201 169900120 Ser GCT gtttccacag actgactatc0 0 84.39 52.3232.07 Both
chr10 11261 55388524 55388443 Ser GCT gggaggcatg tgtgtagcat0 0 85.34 57.7727.57 Both
chr17 3956 45688112 45688031 Ser GCT gtgttgatgt acgagttgtg0 0 85.34 57.7727.57 Both
chr3 8935 119076042 119075961 Ser GCT gagcttctgg aaggtgtctt0 0 85.34 57.7727.57 Both
chr3 9151 117384875 117384794 Ser GCT gagcttctgg aaggtgtctt0 0 85.34 57.7727.57 Both
chr1 11538 227346553 227346472 Ser GCT tcctacgtgg gtcctgtttt0 0 85.83 58.2527.58 Both
chr1 11554 227253389 227253308 Ser GCT tcctacgtgg gtcctgtttt0 0 85.83 58.2527.58 Both
chr17 3674 58891301 58891220 Ser GCT gggcagggag ttggtacctg0 0 88.12 59.2228.90 Both
chr17 3953 45691884 45691803 Ser TGA gctcattctt tgcttatgtt0 0 86.82 53.6833.14 Both
chr17 3686 58801093 58801012 Ser TGA taagaaggag gttttatcaa0 0 87.08 55.9731.11 Both
chr11 2516 90881472 90881391 Ser TGA gggggggggt gtagctcttc0 0 88.78 63.1425.64 Both
chr20 1886 28743453 28743534 Ser TGA cttccccgta gaagcgggtg0 0 90.86 62.3328.53 Both
 
chr3 4020 133782549 133782621 Thr AGT tgagaggggg aaaaaagaaa0 0 37.91 28.499.42 Both
chr17 3666 58935889 58935816 Thr AGT tgtcagagga ttagtgctgg0 0 73.09 53.1019.99 Both
chr17 3718 57911938 57911865 Thr AGT aatttgtaag ctaggagact0 0 78.34 58.0020.34 Both
chr10 2474 55440106 55440179 Thr AGT tgtcgtcgtt gatttgtgtg0 0 79.86 60.2619.60 Both
chr17 3937 45774187 45774114 Thr AGT aaagcgtgcc ttttgtgttt0 0 83.05 63.4919.56 Both
chr10 11262 55388220 55388147 Thr AGT atgtcacgta cgtggctttt0 0 84.06 64.4519.61 Both
chr10 2464 55360947 55361020 Thr AGT tcttggcatt atgtgtaacc0 0 84.06 64.4519.61 Both
chr1 15533 92617072 92616999 Thr AGT ccgtgcgggc cacgctgagc0 0 84.06 64.4519.61 Both
chr12 5973 25226009 25225887 Thr AGT ggaaggcgct aatgaatgga25225973 25225923 29.45 23.955.50 Both
chr17 1881 57926339 57926412 Thr CGT ccttccgggt gagtaatggt0 0 78.56 62.3416.22 Both
chr10 10494 64591065 64590994 Thr CGT tcggctgtca gcgtttggga0 0 79.77 59.8819.89 Both
chr17 1888 58030738 58030811 Thr CGT atcaccatgt tctgttttca0 0 80.32 60.3919.93 Both
chr14 5981 30155005 30154934 Thr CGT ccttaacgca gcagctgctt0 0 80.42 57.5722.85 Both
chr10 11327 54791636 54791564 Thr TGT ctcagtgact acgagttact0 0 74.17 51.7322.44 Both
chr15 915 31847943 31848015 Thr TGT cggttcgtgt aagtcaacgt0 0 78.79 56.3622.43 Both
chr10 1313 33986725 33986797 Thr TGT tttcgcgact accagtaact0 0 79.46 56.9222.54 Both
chr15 5211 31823322 31823250 Thr TGT cacaggtgag tcggttcttt0 0 79.46 56.9222.54 Both
chr17 1883 57943074 57943147 Thr TGT tgcagcagtt gtctagctgc0 0 85.34 65.4119.93 Both
 
chr13 4571 76470457 76470386 Trp CCA tctgcaggga tctatctggg0 0 62.05 50.9811.07 Eufind
chr7 8337 31970001 31969930 Trp CCA agcccagcag taagcttttt0 0 71.65 49.8521.80 Both
chr17 3948 45710194 45710123 Trp CCA tctttagggt gtgttttata0 0 72.12 51.7820.34 Both
chr17 3949 45702050 45701979 Trp CCA ttaaggctgt agagttttgg0 0 74.00 52.2121.79 Both
chr10 11601 47463655 47463584 Trp CCA agcctgctgt agttaggttt0 0 74.80 53.0021.80 Both
chr10 11260 55388993 55388922 Trp CCA gtggccggcc gctccttttt0 0 74.81 54.9419.87 Both
chr10 2467 55365077 55365148 Trp CCA gccagaggga tctgctttat0 0 74.81 54.9419.87 Both
chr10 11440 48948232 48948161 Trp CCA ctgtatcagc tgaatacctg0 0 76.45 54.6621.79 Both
 
chr2 2175 124127771 124127860 Tyr GTA cttgtcgctc aagagcttgc124127808 124127824 72.50 46.0926.41 Both
chr15 916 31848822 31848910 Tyr GTA cccgtgcttc gtagcctgta31848859 31848874 74.16 47.7526.41 Both
 
chr6 7782 36381565 36381491 Undet ??? gacagcagtg tgtggtggtt0 0 23.05 16.076.98 Both
chr2 3215 184434409 184434482 Undet ??? aaataagggg aaaaaagaaa0 0 24.86 17.457.41 Both
chr7 6372 115968105 115968041 Undet ??? agagaggggt aaaaaagaaa0 0 28.84 19.749.10 Both
 
chr1 10799 249418990 249418918 Val AAC ccggggttgg gntgtncann0 0 33.78 22.9210.86 Both
chr5 7583 161637996 161637925 Val AAC aaagatggct gaaaggaaac0 0 55.85 47.678.18 Eufind
chr17 1605 45815530 45815602 Val AAC accaatggat gtcttctttt0 0 67.39 46.1521.24 Both
chr17 3670 58921329 58921257 Val AAC cactaggggt ctatgttttt0 0 84.34 60.8623.48 Both
chr10 1309 33958100 33958172 Val AAC acaagcgtgg gcgcttaaat0 0 86.79 61.6025.19 Both
chr10 1315 33989863 33989935 Val AAC acagacatga gaggttgcat0 0 86.79 61.6025.19 Both
chr2 9605 136109228 136109156 Val AAC aggcagccag cgatttttat0 0 86.79 61.6025.19 Both
chr3 11056 40753898 40753826 Val AAC actcgcgtgg gcgcttaaat0 0 86.79 61.6025.19 Both
chr17 3927 45929460 45929388 Val CAC tgcattgtac gcacttgcta0 0 59.14 42.7516.39 Eufind
chr17 3928 45923039 45922967 Val CAC gctgtgggaa gcaccaattt0 0 63.04 48.9914.05 Both
chr17 1607 45816908 45816980 Val CAC tacccgttgt tctctatttt0 0 85.55 61.0424.51 Both
chr17 1601 45778536 45778608 Val CAC ccagtagcta gcggtggttt0 0 85.74 60.5525.19 Both
chr10 1308 33951729 33951801 Val CAC aaacagtgcg gttttagacc0 0 87.39 62.2025.19 Both
chr13 2253 94104660 94104732 Val CAC tagacagcta gctacttcct0 0 87.39 62.2025.19 Both
chr2 4363 217979289 217979361 Val CAC ccaacaggca cttggtctcc0 0 87.39 62.2025.19 Both
chr6 7347 51211283 51211211 Val TAC atttcagccc cgtggtgtac0 0 57.22 35.8421.38 tRNAscan
chr1 7481 235509981 235510053 Val TAC gcacccgccc cgtggtgtgc0 0 82.67 57.6325.04 Both
chr1 7482 235510321 235510393 Val TAC tgcagcacgt ttggagattt0 0 82.67 57.6325.04 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.