GtRNAdb

tRNAscan-SE Analysis of Sorghum bicolor (Version 1.0)

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>> Genome Seq
tRNA Gene Summary





tRNAs Decoding Standard 20 AA577
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)1
tRNAs with undetermined
or unknown isotypes
8
Predicted pseudogenes62
Total tRNAs649


Intron Summary

tRNAs with introns
32
Ser
TGA
1
Leu
CAG
1
Met
CAT
17
Tyr
ATA
1
Tyr
GTA
12


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
18
GGC
 
CGC
11
TGC
13
42
GlyACC
 
GCC
24
CCC
6
TCC
10
40
ProAGG
14
GGG
 
CGG
7
TGG
11
32
ThrAGT
12
GGT
2
CGT
6
TGT
9
29
ValAAC
16
GAC
2
CAC
10
TAC
4
32

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
11
GGA
3
CGA
6
TGA
12
ACT
 
GCT
13
 
 
 
 
45
ArgACG
15
GCG
 
CCG
7
TCG
4
 
 
 
 
CCT
10
TCT
7
43
LeuAAG
15
GAG
 
CAG
11
TAG
9
 
 
 
 
CAA
9
TAA
4
48

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
20
 
 
 
 
20
AsnATT
1
GTT
16
 
 
 
 
17
Lys 
 
 
 
CTT
18
TTT
9
27
AspATC
2
GTC
24
 
 
 
 
26
Glu 
 
 
 
CTC
23
TTC
13
36
HisATG
1
GTG
15
 
 
 
 
16
Gln 
 
 
 
CTG
13
TTG
11
24

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
17
GAT
 
 
 
TAT
5
22
Met 
 
 
 
CAT
37
 
 
37
TyrATA
1
GTA
14
 
 
 
 
15
Supres 
 
 
 
CTA
1
TTA
 
1
CysACA
 
GCA
13
 
 
 
 
13
Trp 
 
 
 
CCA
13
 
 
13
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.