GtRNAdb

tRNAscan-SE Analysis of Schizosaccharomyces pombe

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA186
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes2
Total tRNAs188


Intron Summary

tRNAs with introns
44
Ala
CGC
1
Pro
CGG
1
Val
AAC
9
Ser
CGA
1
Ser
TGA
2
Ser
GCT
3
Arg
CCG
1
Arg
CCT
1
Leu
CAG
1
Leu
TAG
1
Leu
CAA
4
Leu
TAA
2
Lys
CTT
9
Ile
TAT
1
Met
CAT
3
Tyr
GTA
4


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
9
GGC
 
CGC
1
TGC
2
12
GlyACC
 
GCC
8
CCC
1
TCC
3
12
ProAGG
6
GGG
 
CGG
1
TGG
2
9
ThrAGT
7
GGT
 
CGT
1
TGT
3
11
ValAAC
9
GAC
 
CAC
1
TAC
3
13

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
7
GGA
 
CGA
1
TGA
3
ACT
 
GCT
3
 
 
 
 
14
ArgACG
8
GCG
 
CCG
1
TCG
2
 
 
 
 
CCT
1
TCT
3
15
LeuAAG
5
GAG
 
CAG
1
TAG
2
 
 
 
 
CAA
4
TAA
2
14

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
6
 
 
 
 
6
AsnATT
 
GTT
7
 
 
 
 
7
Lys 
 
 
 
CTT
9
TTT
4
13
AspATC
 
GTC
8
 
 
 
 
8
Glu 
 
 
 
CTC
6
TTC
5
11
HisATG
 
GTG
5
 
 
 
 
5
Gln 
 
 
 
CTG
2
TTG
4
6

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
8
GAT
1
 
 
TAT
1
10
Met 
 
 
 
CAT
10
 
 
10
TyrATA
 
GTA
4
 
 
 
 
4
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
3
 
 
 
 
3
Trp 
 
 
 
CCA
3
 
 
3
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.