GtRNAdb

tRNAscan-SE Analysis of Shewanella MR-4

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA100
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs101


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
2
CGC
 
TGC
2
4
GlyACC
 
GCC
6
CCC
 
TCC
1
7
ProAGG
 
GGG
1
CGG
 
TGG
3
4
ThrAGT
 
GGT
2
CGT
 
TGT
3
5
ValAAC
 
GAC
2
CAC
 
TAC
6
8

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
1
CGA
 
TGA
3
ACT
 
GCT
2
 
 
 
 
6
ArgACG
6
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
9
LeuAAG
 
GAG
1
CAG
2
TAG
2
 
 
 
 
CAA
1
TAA
3
9

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
3
 
 
 
 
3
AsnATT
 
GTT
5
 
 
 
 
5
Lys 
 
 
 
CTT
 
TTT
7
7
AspATC
 
GTC
4
 
 
 
 
4
Glu 
 
 
 
CTC
 
TTC
7
7
HisATG
 
GTG
2
 
 
 
 
2
Gln 
 
 
 
CTG
 
TTG
3
3

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
2
 
 
TAT
 
2
Met 
 
 
 
CAT
8
 
 
8
TyrATA
 
GTA
4
 
 
 
 
4
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
2
 
 
 
 
2
Trp 
 
 
 
CCA
1
 
 
1
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.