GtRNAdb

tRNAscan-SE Analysis of Silicibacter TM1040

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundstRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
Silicibacter_sp_TM1040_mega_plasmid 12 403998 403923 Ala GGC    0 0 87.77 70.5617.21 Both
Silicibacter_sp_TM1040 2 146698 146773 Ala TGC    0 0 89.52 70.0619.46 Both
Silicibacter_sp_TM1040_mega_plasmid 15 177007 176932 Ala TGC    0 0 89.52 70.0619.46 Both
Silicibacter_sp_TM1040_mega_plasmid 2 507729 507804 Ala TGC    0 0 89.52 70.0619.46 Both
Silicibacter_sp_TM1040_mega_plasmid 5 623981 624056 Ala TGC    0 0 89.52 70.0619.46 Both
Silicibacter_sp_TM1040_plasmid_unnamed 3 12159 12084 Ala TGC    0 0 89.52 70.0619.46 Both
 
Silicibacter_sp_TM1040 4 322763 322839 Arg ACG    0 0 86.67 68.4418.23 Both
Silicibacter_sp_TM1040_mega_plasmid 13 309913 309837 Arg ACG    0 0 86.67 68.4418.23 Both
Silicibacter_sp_TM1040 35 1307135 1307059 Arg CCG    0 0 89.29 66.3622.93 Both
Silicibacter_sp_TM1040_mega_plasmid 17 101795 101719 Arg CCT    0 0 86.89 65.1221.77 Both
Silicibacter_sp_TM1040 27 2821181 2821104 Arg TCT    0 0 79.91 58.3321.58 Both
 
Silicibacter_sp_TM1040 15 1582218 1582292 Asn GTT    0 0 87.59 63.6423.95 Both
Silicibacter_sp_TM1040 37 1051759 1051685 Asn GTT    0 0 87.59 63.6423.95 Both
 
Silicibacter_sp_TM1040 10 910673 910749 Asp GTC    0 0 94.74 76.2818.46 Both
Silicibacter_sp_TM1040 8 910354 910430 Asp GTC    0 0 94.74 76.2818.46 Both
Silicibacter_sp_TM1040 9 910513 910589 Asp GTC    0 0 94.74 76.2818.46 Both
 
Silicibacter_sp_TM1040 31 1846785 1846712 Cys GCA    0 0 76.36 54.1822.18 Both
 
Silicibacter_sp_TM1040 5 572500 572574 Gln TTG    0 0 70.93 44.4826.45 Both
 
Silicibacter_sp_TM1040 19 2277500 2277574 Glu TTC    0 0 58.22 31.9126.31 Eufind
Silicibacter_sp_TM1040 20 2277789 2277863 Glu TTC    0 0 58.22 31.9126.31 Eufind
 
Silicibacter_sp_TM1040 13 1416226 1416299 Gly CCC    0 0 82.31 66.3815.93 Both
Silicibacter_sp_TM1040 16 2139444 2139518 Gly GCC    0 0 82.56 53.6428.92 Both
Silicibacter_sp_TM1040 17 2139710 2139784 Gly GCC    0 0 82.56 53.6428.92 Both
Silicibacter_sp_TM1040 18 2139963 2140037 Gly GCC    0 0 82.56 53.6428.92 Both
Silicibacter_sp_TM1040 30 1934912 1934839 Gly TCC    0 0 66.99 48.1618.83 Both
 
Silicibacter_sp_TM1040 28 2225540 2225464 His GTG    0 0 83.06 61.1321.93 Both
 
Silicibacter_sp_TM1040 1 146556 146632 Ile GAT    0 0 94.31 75.6218.69 Both
Silicibacter_sp_TM1040_mega_plasmid 1 507587 507663 Ile GAT    0 0 94.31 75.6218.69 Both
Silicibacter_sp_TM1040_mega_plasmid 14 177149 177073 Ile GAT    0 0 94.31 75.6218.69 Both
Silicibacter_sp_TM1040_mega_plasmid 4 623839 623915 Ile GAT    0 0 94.31 75.6218.69 Both
Silicibacter_sp_TM1040_plasmid_unnamed 2 12301 12225 Ile GAT    0 0 94.31 75.6218.69 Both
 
Silicibacter_sp_TM1040 12 1257137 1257222 Leu CAA    0 0 71.99 38.1233.87 Both
Silicibacter_sp_TM1040 24 2984740 2984654 Leu CAG    0 0 78.83 49.1229.71 Both
Silicibacter_sp_TM1040 25 2984497 2984411 Leu CAG    0 0 78.83 49.1229.71 Both
Silicibacter_sp_TM1040_mega_plasmid 18 56119 56033 Leu GAG    0 0 70.14 35.5534.59 Both
Silicibacter_sp_TM1040 32 1788305 1788222 Leu TAA    0 0 76.32 46.0330.29 Both
Silicibacter_sp_TM1040 34 1416011 1415927 Leu TAG    0 0 80.62 57.1723.45 Both
 
Silicibacter_sp_TM1040 26 2972689 2972614 Lys TTT    0 0 100.36 80.9019.46 Both
 
Silicibacter_sp_TM1040 3 150565 150641 Met CAT    0 0 80.92 52.0528.87 Both
Silicibacter_sp_TM1040_mega_plasmid 16 173140 173064 Met CAT    0 0 80.92 52.0528.87 Both
Silicibacter_sp_TM1040_mega_plasmid 3 511596 511672 Met CAT    0 0 80.92 52.0528.87 Both
Silicibacter_sp_TM1040_mega_plasmid 6 627848 627924 Met CAT    0 0 80.92 52.0528.87 Both
Silicibacter_sp_TM1040_plasmid_unnamed 4 8348 8272 Met CAT    0 0 80.92 52.0528.87 Both
Silicibacter_sp_TM1040 14 1579604 1579679 Met CAT    0 0 86.92 56.0430.88 Both
Silicibacter_sp_TM1040 39 452076 452000 Met CAT    0 0 91.49 73.4818.01 Both
 
Silicibacter_sp_TM1040_mega_plasmid 11 598928 598854 Phe GAA    0 0 80.69 64.6416.05 Both
 
Silicibacter_sp_TM1040_mega_plasmid 7 815593 815517 Pro CGG    0 0 78.27 54.2624.01 Both
Silicibacter_sp_TM1040 38 972939 972863 Pro GGG    0 0 83.39 57.8525.54 Both
Silicibacter_sp_TM1040 11 1237578 1237654 Pro TGG    0 0 85.12 61.3523.77 Both
 
Silicibacter_sp_TM1040 29 2153032 2152949 Pseudo GTA    0 0 32.27 5.1727.10 Eufind
 
Silicibacter_sp_TM1040 36 1289737 1289648 Ser CGA    0 0 64.26 30.7533.51 Both
Silicibacter_sp_TM1040 22 2576175 2576264 Ser GCT    0 0 78.28 48.3429.94 Both
Silicibacter_sp_TM1040 33 1534119 1534030 Ser GGA    0 0 69.16 40.1629.00 Both
Silicibacter_sp_TM1040_mega_plasmid 9 637659 637570 Ser TGA    0 0 64.45 30.7033.75 Both
 
Silicibacter_sp_TM1040 23 2994766 2994841 Thr CGT    0 0 90.45 68.0722.38 Both
Silicibacter_sp_TM1040_mega_plasmid 10 605990 605916 Thr GGT    0 0 88.81 62.5926.22 Both
Silicibacter_sp_TM1040_mega_plasmid 8 690536 690461 Thr TGT    0 0 95.59 74.5221.07 Both
Silicibacter_sp_TM1040_plasmid_unnamed 1 23684 23609 Thr TGT    0 0 95.59 74.5221.07 Both
 
Silicibacter_sp_TM1040 21 2575693 2575768 Trp CCA    0 0 88.85 70.3818.47 Both
 
Silicibacter_sp_TM1040 6 832030 832104 Val CAC    0 0 85.22 59.3925.83 Both
Silicibacter_sp_TM1040 40 133591 133517 Val GAC    0 0 87.93 62.2525.68 Both
Silicibacter_sp_TM1040 7 909925 910000 Val TAC    0 0 89.32 64.0525.27 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.