GtRNAdb

tRNAscan-SE Analysis of Sus scrofa (pig) (SGSC Sscrofa9.2 Nov 2009)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA731
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)1
tRNAs with undetermined
or unknown isotypes
2
Predicted pseudogenes0
Total tRNAs734


Intron Summary

tRNAs with introns
50
Gly
GCC
2
Ser
GCT
2
Arg
TCT
5
Leu
CAA
6
Asn
ATT
1
Asn
GTT
1
Asp
ATC
1
Asp
GTC
15
Ile
TAT
6
Tyr
GTA
11


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
24
GGC
 
CGC
7
TGC
17
48
GlyACC
 
GCC
16
CCC
7
TCC
7
30
ProAGG
8
GGG
 
CGG
2
TGG
4
14
ThrAGT
8
GGT
 
CGT
5
TGT
8
21
ValAAC
8
GAC
 
CAC
9
TAC
9
26

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
13
GGA
 
CGA
4
TGA
7
ACT
 
GCT
10
 
 
 
 
34
ArgACG
4
GCG
 
CCG
3
TCG
6
 
 
 
 
CCT
7
TCT
7
27
LeuAAG
6
GAG
 
CAG
3
TAG
3
 
 
 
 
CAA
6
TAA
4
22

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
17
 
 
 
 
17
AsnATT
2
GTT
14
 
 
 
 
16
Lys 
 
 
 
CTT
12
TTT
33
45
AspATC
10
GTC
87
 
 
 
 
97
Glu 
 
 
 
CTC
13
TTC
223
236
HisATG
 
GTG
11
 
 
 
 
11
Gln 
 
 
 
CTG
12
TTG
8
20

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
9
GAT
 
 
 
TAT
6
15
Met 
 
 
 
CAT
25
 
 
25
TyrATA
 
GTA
13
 
 
 
 
13
Supres 
 
 
 
CTA
 
TTA
1
1
CysACA
1
GCA
8
 
 
 
 
9
Trp 
 
 
 
CCA
5
 
 
5
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.