GtRNAdb

tRNAscan-SE Analysis of Streptococcus pneumoniae D39

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 14827 14898 Glu TTC tagcaactca tggtatgttg0 0 64.66 38.0126.65  
chr 2 16748 16820 Ala TGC gaggtcttgt ttggtgagag0 0 84.64 67.4517.19  
chr 3 20044 20117 Asn GTT ttagctttaa taattgagtt0 0 76.37 53.2623.11  
chr 4 766945 767025 Tyr GTA gttgattgta tttcattaat0 0 66.36 40.2226.14  
chr 5 767035 767106 Gln TTG atttcattaa ttcttaggta0 0 64.56 36.7427.82  
chr 6 912395 912467 Thr GGT tcttaagtaa tgatatgtat0 0 75.79 53.1822.61  
chr 7 1598070 1598142 Lys CTT ttttttcttt tataaataca0 0 82.06 64.2817.78  
chr 8 1759580 1759650 Cys GCA taaacgttaa tctataactt0 0 60.11 41.7618.35  
chr 9 2043200 2043127 Arg TCT aattgtatta atataatagc0 0 80.57 59.0121.56  
chr 10 2040690 2040619 Glu TTC acagatagaa ttttatccgc0 0 64.66 38.0126.65  
chr 11 2040613 2040540 Asn GTT gactatttta tatagataaa0 0 76.37 53.2623.11  
chr 12 1864509 1864438 Glu TTC taacaactca tggtatgttg0 0 64.66 38.0126.65  
chr 13 1862588 1862516 Ala TGC gaggtcttgt ttggtgagag0 0 84.64 67.4517.19  
chr 14 1859293 1859221 Val TAC cttagctcta ttttagcggg0 0 84.84 63.4021.44  
chr 15 1859215 1859145 Gly TCC tcccatttta ttgaactttg0 0 71.92 46.6325.29  
chr 16 1859110 1859037 Ile GAT tttttgactt tagtgtttag0 0 86.72 69.2817.44  
chr 17 1858953 1858864 Ser TGA aaactatttt tttatattaa0 0 61.73 28.4033.33  
chr 18 1858853 1858780 Met CAT tttatattaa taaggctcgg0 0 77.60 52.4025.20  
chr 19 1858776 1858704 Phe GAA cccgcaataa tttatatatt0 0 75.06 63.1311.93  
chr 20 1858691 1858611 Tyr GTA tatatatttt ttttacgggc0 0 65.00 37.5927.41  
chr 21 1858606 1858536 Trp CCA cttccatttt ttaatagaat0 0 53.01 27.0325.98  
chr 22 1858521 1858449 His GTG tagaattatg tattttatat0 0 59.85 39.0620.79  
chr 23 1858438 1858367 Gln TTG tattttatat ttactatttg0 0 64.56 36.7427.82  
chr 24 1858357 1858274 Leu CAA gttactattt tagtatagtg0 0 70.28 43.5726.71  
chr 25 1802584 1802513 Glu TTC tagcaactca tggtatgttg0 0 64.66 38.0126.65  
chr 26 1800663 1800591 Ala TGC gaggtcttgt ttggtgagag0 0 84.64 67.4517.19  
chr 27 1797368 1797296 Val TAC cttagctcta aaggtcccgt0 0 84.84 63.4021.44  
chr 28 1797293 1797221 Asp GTC aactcccaaa tttaagataa0 0 73.97 47.5926.38  
chr 29 1797196 1797124 Lys TTT agttatttta tatatgcggg0 0 82.17 57.5024.67  
chr 30 1797118 1797037 Leu TAG ggtcatatat ttaagatata0 0 68.24 46.7421.50  
chr 31 1797018 1796946 Thr TGT taacaaatga tttttagata0 0 83.52 59.0324.49  
chr 32 1796923 1796852 Gly GCC agaaaacagt tagagaggcc0 0 83.78 59.7124.07  
chr 33 1796844 1796759 Leu TAA gcttagagag taatatggag0 0 68.91 41.0827.83  
chr 34 1796749 1796676 Arg ACG ataatatgga tttttctatt0 0 74.41 53.4121.00  
chr 35 1796660 1796587 Pro TGG ctatttaact ttcattacag0 0 80.16 58.2721.89  
chr 36 1705033 1704962 Glu TTC taacaactca tggtatgttg0 0 64.66 38.0126.65  
chr 37 1703112 1703040 Ala TGC gaggtcttgt ttggtgagag0 0 84.64 67.4517.19  
chr 38 1699817 1699745 Val TAC cttagctcta aaggtcccgt0 0 84.84 63.4021.44  
chr 39 1699742 1699670 Asp GTC aactcccaaa tttaagataa0 0 73.97 47.5926.38  
chr 40 1699645 1699573 Lys TTT agttatttta tatatgcggg0 0 82.17 57.5024.67  
chr 41 1699567 1699486 Leu TAG ggtcatatat ttaagatata0 0 68.24 46.7421.50  
chr 42 1699467 1699395 Thr TGT taacaaatga tttttagata0 0 83.52 59.0324.49  
chr 43 1699372 1699301 Gly GCC agaaaacagt tagagaggcc0 0 83.78 59.7124.07  
chr 44 1699293 1699208 Leu TAA gcttagagag taatatggag0 0 68.91 41.0827.83  
chr 45 1699198 1699125 Arg ACG ataatatgga tttttctatt0 0 74.41 53.4121.00  
chr 46 1699109 1699036 Pro TGG ctatttaact ttcatggcgg0 0 80.16 58.2721.89  
chr 47 1699030 1698957 Met CAT cccgattcat taatgatctt0 0 76.98 66.8510.13  
chr 48 1698943 1698870 Met CAT tgatcttgtc tttgaatatt0 0 86.67 63.4123.26  
chr 49 1698859 1698770 Ser TGA tttgaatatt tttatattat0 0 61.73 28.4033.33  
chr 50 1698756 1698683 Met CAT atattattaa taaggctcgg0 0 77.60 52.4025.20  
chr 51 1698679 1698607 Phe GAA cccgcaataa ttttattgat0 0 75.06 63.1311.93  
chr 52 1698587 1698517 Gly TCC tagtatttat ttgaactttg0 0 71.92 46.6325.29  
chr 53 1698481 1698408 Ile GAT tttttaactt ttaattggag0 0 86.72 69.2817.44  
chr 54 1698401 1698314 Ser GCT cccattaatt ttttaatgag0 0 56.13 19.1536.98  
chr 55 1429610 1429525 Leu AAG agtaatcgac taggaaaaga0 0 54.82 34.8519.97  
chr 56 1180979 1180908 Arg CCT tttttatcta gtaattagac0 0 65.78 43.8121.97  
chr 57 1139148 1139077 Arg CCG aaacaagttt tgtaaacatc0 0 50.72 24.8925.83  
chr 58 781755 781668 Ser GGA agtaagtatt tcgaaaaaag0 0 45.29 11.7933.50  


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.